Mutagenetix > Incidental Mutation

Incidental Mutation 'R4748:Dync1i1'

500049

Institutional Source

Beutler Lab

Gene Symbol

Dync1i1

Ensembl Gene

ENSMUSG00000029757

Gene Name

dynein cytoplasmic 1 intermediate chain 1

Synonyms

IC74, Dncic1, DIC

MMRRC Submission

042030-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.826) question?

Stock #

R4748 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

5725639-6028039 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 5767048 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Lysine to Glutamic Acid at position 91 (K91E)

Ref Sequence

ENSEMBL: ENSMUSP00000121787 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000115554] [ENSMUST00000115555] [ENSMUST00000115556] [ENSMUST00000115559] [ENSMUST00000153942]

AlphaFold

O88485

Predicted Effect

probably benign
Transcript: ENSMUST00000115554
AA Change: K43E

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000111216
Gene: ENSMUSG00000029757
AA Change: K43E

Domain	Start	End	E-Value	Type
coiled coil region	1	44	N/A	INTRINSIC
low complexity region	75	90	N/A	INTRINSIC
Pfam:Dynein_IC2	105	137	3.1e-20	PFAM
low complexity region	143	150	N/A	INTRINSIC
Blast:WD40	235	288	2e-26	BLAST
WD40	293	332	9.6e-2	SMART
WD40	339	382	8.91e-1	SMART
WD40	436	481	4.48e-2	SMART
WD40	484	524	6.19e-1	SMART
WD40	529	569	7.67e0	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000115555
AA Change: K43E

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000111217
Gene: ENSMUSG00000029757
AA Change: K43E

Domain	Start	End	E-Value	Type
coiled coil region	1	44	N/A	INTRINSIC
low complexity region	92	107	N/A	INTRINSIC
Pfam:Dynein_IC2	143	173	6.9e-18	PFAM
low complexity region	180	187	N/A	INTRINSIC
Blast:WD40	272	325	4e-26	BLAST
WD40	330	369	9.6e-2	SMART
WD40	376	419	8.91e-1	SMART
WD40	473	518	4.48e-2	SMART
WD40	521	561	6.19e-1	SMART
WD40	566	606	7.67e0	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000115556
AA Change: K43E

PolyPhen 2 Score 0.021 (Sensitivity: 0.95; Specificity: 0.80)

SMART Domains

Protein: ENSMUSP00000111218
Gene: ENSMUSG00000029757
AA Change: K43E

Domain	Start	End	E-Value	Type
coiled coil region	1	44	N/A	INTRINSIC
Pfam:Dynein_IC2	114	146	9.2e-21	PFAM
low complexity region	152	159	N/A	INTRINSIC
Blast:WD40	245	297	3e-26	BLAST
WD40	302	341	9.6e-2	SMART
WD40	348	391	8.91e-1	SMART
WD40	445	490	4.48e-2	SMART
WD40	493	533	6.19e-1	SMART
WD40	538	578	7.67e0	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000115559
AA Change: K43E

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000111221
Gene: ENSMUSG00000029757
AA Change: K43E

Domain	Start	End	E-Value	Type
coiled coil region	1	44	N/A	INTRINSIC
low complexity region	75	90	N/A	INTRINSIC
Pfam:Dynein_IC2	125	157	2e-20	PFAM
low complexity region	163	170	N/A	INTRINSIC
Blast:WD40	256	308	3e-26	BLAST
WD40	313	352	9.6e-2	SMART
WD40	359	402	8.91e-1	SMART
WD40	456	501	4.48e-2	SMART
WD40	504	544	6.19e-1	SMART
WD40	549	589	7.67e0	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000153942
AA Change: K91E

PolyPhen 2 Score 0.659 (Sensitivity: 0.86; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000121787
Gene: ENSMUSG00000029757
AA Change: K91E

Domain	Start	End	E-Value	Type
coiled coil region	45	91	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000204149
AA Change: K32E

PolyPhen 2 Score 0.594 (Sensitivity: 0.87; Specificity: 0.91)

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.1%
20x: 94.9%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 85 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2310009B15Rik	T	A	1: 138,856,656	E54D	possibly damaging	Het
4933415F23Rik	T	C	1: 23,101,870	E121G	probably damaging	Het
Abcb6	C	A	1: 75,177,358	G367W	probably damaging	Het
Asprv1	A	G	6: 86,628,423	M84V	probably damaging	Het
Aspscr1	T	C	11: 120,701,507	V291A	probably damaging	Het
B4galnt4	T	C	7: 141,071,720	F980L	probably damaging	Het
Bpi	G	A	2: 158,272,021	V280I	possibly damaging	Het
Bptf	T	C	11: 107,095,880	D581G	probably damaging	Het
Cap2	T	A	13: 46,639,826	Y223N	possibly damaging	Het
Ccdc141	A	C	2: 77,057,980	I480M	possibly damaging	Het
Ccnh	T	A	13: 85,189,639	V35E	probably benign	Het
Cd6	G	T	19: 10,794,225	S433*	probably null	Het
Ceacam10	A	C	7: 24,781,052	I83L	probably benign	Het
Chek2	T	C	5: 110,855,839		probably null	Het
Chia1	A	T	3: 106,122,449	D73V	probably damaging	Het
Commd2	G	A	3: 57,646,794	T162I	probably benign	Het
Creb3l3	C	T	10: 81,086,047	A316T	probably benign	Het
Cul4a	A	G	8: 13,123,526	K1R	probably benign	Het
Cyp2c23	T	C	19: 44,016,737		probably null	Het
D630045J12Rik	T	C	6: 38,196,841	T131A	possibly damaging	Het
Dctn4	A	C	18: 60,550,236	K295N	probably damaging	Het
Dnah1	A	G	14: 31,319,945	V23A	probably benign	Het
Dzip1l	A	G	9: 99,642,651	D275G	probably damaging	Het
Enam	C	A	5: 88,501,543	P304T	probably damaging	Het
Enpep	A	G	3: 129,332,163	Y107H	probably damaging	Het
Exd2	T	C	12: 80,480,576	L27P	probably damaging	Het
Fam135b	T	A	15: 71,464,055	D430V	probably benign	Het
Fam222b	C	T	11: 78,154,603	T202I	possibly damaging	Het
Fmod	T	A	1: 134,041,174	N317K	probably damaging	Het
Frem2	A	G	3: 53,541,093	F2301L	probably damaging	Het
Frem3	T	C	8: 80,611,459	F127S	probably damaging	Het
Gbp7	A	G	3: 142,538,087	S132G	probably benign	Het
Gm4787	A	G	12: 81,378,056	C443R	probably damaging	Het
Grik2	T	C	10: 49,535,341	M5V	possibly damaging	Het
Helb	T	C	10: 120,084,849	D1063G	probably benign	Het
Kirrel	C	T	3: 87,089,151	M380I	probably null	Het
Krt90	G	A	15: 101,555,333	L429F	probably damaging	Het
Lrr1	C	A	12: 69,174,462	T126K	probably benign	Het
Mgat4e	C	A	1: 134,542,028	D93Y	probably damaging	Het
Mllt3	A	T	4: 87,840,781	S343R	possibly damaging	Het
Mms19	T	A	19: 41,944,558	S1031C	probably damaging	Het
Mtrf1	C	T	14: 79,411,650	H237Y	probably damaging	Het
Nckap1l	T	A	15: 103,473,056	L408Q	probably damaging	Het
Oit3	A	T	10: 59,424,082	C500S	probably damaging	Het
Olfr1163	T	A	2: 88,070,612	I257L	probably benign	Het
Olfr1238	C	T	2: 89,406,255	V275I	probably benign	Het
Olfr273	A	G	4: 52,856,076	S146P	possibly damaging	Het
Olfr738	T	G	14: 50,413,876	L111V	possibly damaging	Het
Otud7a	T	C	7: 63,735,915	S376P	possibly damaging	Het
Pabpc2	A	T	18: 39,774,269	K196*	probably null	Het
Paqr8	T	A	1: 20,935,413	C264S	probably benign	Het
Pgm2	T	A	4: 99,981,979	F459Y	probably benign	Het
Phip	C	A	9: 82,908,869	V675L	probably benign	Het
Pnma1	T	G	12: 84,147,723	T69P	probably benign	Het
Ptpn12	A	T	5: 21,005,385	C242*	probably null	Het
Rabep1	T	A	11: 70,908,468	V306E	probably benign	Het
Ros1	C	T	10: 52,115,997	D1377N	probably benign	Het
Ryr3	T	C	2: 112,964,405	T121A	possibly damaging	Het
Scaf11	G	A	15: 96,420,421	Q421*	probably null	Het
Shcbp1	G	A	8: 4,744,512	T427M	probably damaging	Het
Shprh	G	A	10: 11,170,476	R979H	probably damaging	Het
Slc22a27	C	T	19: 7,925,876	C163Y	probably benign	Het
Slc27a1	A	G	8: 71,580,675	D287G	probably damaging	Het
Slc27a1	C	T	8: 71,580,809	T310M	possibly damaging	Het
Slc29a3	A	G	10: 60,716,326	V313A	probably benign	Het
Slc35f2	A	T	9: 53,771,785	M1L	probably benign	Het
Sltm	G	C	9: 70,581,365	R599T	probably damaging	Het
Spic	T	A	10: 88,675,890	Q168L	probably damaging	Het
Spink6	G	A	18: 44,082,361		probably null	Het
Stac2	T	C	11: 98,041,372	E235G	possibly damaging	Het
Szt2	G	A	4: 118,389,191	Q957*	probably null	Het
Them7	A	T	2: 105,378,646	T104S	possibly damaging	Het
Tmed4	T	A	11: 6,271,716	I207F	possibly damaging	Het
Tmem248	A	G	5: 130,236,890	E178G	probably benign	Het
Tomm40l	G	A	1: 171,219,562	R296*	probably null	Het
Trim80	C	A	11: 115,448,138	T598N	possibly damaging	Het
Trim9	T	C	12: 70,248,273	N688D	probably damaging	Het
Vil1	C	T	1: 74,421,266	A194V	probably damaging	Het
Vmn2r61	A	T	7: 42,267,141	M393L	probably damaging	Het
Vmn2r63	C	T	7: 42,928,120	M331I	probably benign	Het
Vps33b	G	T	7: 80,290,048	A516S	probably damaging	Het
Wisp1	C	A	15: 66,906,640	Y103*	probably null	Het
Zc3h6	G	A	2: 129,002,240	G235R	probably damaging	Het
Zfp612	T	A	8: 110,088,672	D170E	probably benign	Het
Zfp746	A	G	6: 48,064,556	I412T	probably benign	Het

Other mutations in Dync1i1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00468:Dync1i1	APN	6	5972135	missense	probably damaging	1.00
IGL01816:Dync1i1	APN	6	5767146	critical splice donor site	probably null
IGL02171:Dync1i1	APN	6	5969498	missense	probably damaging	0.98
IGL02646:Dync1i1	APN	6	5767034	missense	probably benign	0.12
IGL02672:Dync1i1	APN	6	5767034	missense	probably benign	0.12
IGL02691:Dync1i1	APN	6	5800767	splice site	probably benign
IGL02880:Dync1i1	APN	6	5966821	splice site	probably null
IGL02796:Dync1i1	UTSW	6	5757385	missense	probably benign	0.00
R0519:Dync1i1	UTSW	6	6027399	missense	probably benign
R1404:Dync1i1	UTSW	6	5915876	missense	probably damaging	1.00
R1404:Dync1i1	UTSW	6	5915876	missense	probably damaging	1.00
R1499:Dync1i1	UTSW	6	5769799	splice site	probably benign
R2119:Dync1i1	UTSW	6	5767096	missense	probably damaging	0.97
R3177:Dync1i1	UTSW	6	5972211	critical splice donor site	probably null
R3277:Dync1i1	UTSW	6	5972211	critical splice donor site	probably null
R4028:Dync1i1	UTSW	6	5961842	missense	probably damaging	1.00
R4058:Dync1i1	UTSW	6	5769764	missense	probably damaging	0.99
R4551:Dync1i1	UTSW	6	5923206	missense	probably benign	0.01
R5263:Dync1i1	UTSW	6	5969446	missense	possibly damaging	0.88
R6193:Dync1i1	UTSW	6	5730679	missense	probably benign	0.03
R6280:Dync1i1	UTSW	6	5972084	missense	probably benign	0.00
R6933:Dync1i1	UTSW	6	5913333	missense	probably damaging	1.00
R7083:Dync1i1	UTSW	6	5969429	missense	probably damaging	1.00
R7347:Dync1i1	UTSW	6	5784530	makesense	probably null
R7512:Dync1i1	UTSW	6	5969410	missense	possibly damaging	0.88
R7543:Dync1i1	UTSW	6	5784464	missense	possibly damaging	0.93
R7601:Dync1i1	UTSW	6	5905129	missense	probably benign	0.19
R8349:Dync1i1	UTSW	6	5966815	missense	possibly damaging	0.88
R8449:Dync1i1	UTSW	6	5966815	missense	possibly damaging	0.88
R8518:Dync1i1	UTSW	6	5913330	missense	probably damaging	0.97
R8766:Dync1i1	UTSW	6	5767142	missense	possibly damaging	0.57
R9242:Dync1i1	UTSW	6	5769706	missense	probably benign
R9253:Dync1i1	UTSW	6	5769698	missense	probably benign	0.00
R9375:Dync1i1	UTSW	6	5913443	missense	possibly damaging	0.94
X0010:Dync1i1	UTSW	6	5972141	missense	probably benign	0.06
Z1177:Dync1i1	UTSW	6	5767057	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- AATACCTGAGCCGTTAGAGTG -3'
(R):5'- TGCAACTAGAACAGTAAGCCCTAG -3'

Sequencing Primer
(F):5'- AGCCGTTAGAGTGATTTTCATCC -3'
(R):5'- AATAAAGCTAACACTTAAGAGCACAG -3'

Posted On

2017-11-30