Incidental Mutation 'R0973:Utp25'
ID 500367
Institutional Source Beutler Lab
Gene Symbol Utp25
Ensembl Gene ENSMUSG00000016181
Gene Name UTP25 small subunit processome component
Synonyms AA408296, mDef, Diexf
MMRRC Submission 039102-MU
Accession Numbers
Essential gene? Probably essential (E-score: 0.970) question?
Stock # R0973 (G1)
Quality Score 225
Status Not validated
Chromosome 1
Chromosomal Location 192786707-192812603 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 192797011 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Asparagine to Lysine at position 573 (N573K)
Ref Sequence ENSEMBL: ENSMUSP00000141676 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000085555] [ENSMUST00000193460] [ENSMUST00000195291]
AlphaFold no structure available at present
Predicted Effect possibly damaging
Transcript: ENSMUST00000085555
AA Change: N573K

PolyPhen 2 Score 0.828 (Sensitivity: 0.84; Specificity: 0.93)
SMART Domains Protein: ENSMUSP00000082691
Gene: ENSMUSG00000016181
AA Change: N573K

DomainStartEndE-ValueType
low complexity region 51 70 N/A INTRINSIC
coiled coil region 72 113 N/A INTRINSIC
low complexity region 123 139 N/A INTRINSIC
low complexity region 217 224 N/A INTRINSIC
Pfam:UTP25 288 763 6.1e-200 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000193070
Predicted Effect probably benign
Transcript: ENSMUST00000193460
AA Change: N85K

PolyPhen 2 Score 0.074 (Sensitivity: 0.93; Specificity: 0.85)
SMART Domains Protein: ENSMUSP00000142059
Gene: ENSMUSG00000016181
AA Change: N85K

DomainStartEndE-ValueType
Pfam:DUF1253 1 205 6.8e-78 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000194412
Predicted Effect probably damaging
Transcript: ENSMUST00000195291
AA Change: N573K

PolyPhen 2 Score 0.980 (Sensitivity: 0.75; Specificity: 0.96)
SMART Domains Protein: ENSMUSP00000141676
Gene: ENSMUSG00000016181
AA Change: N573K

DomainStartEndE-ValueType
low complexity region 51 70 N/A INTRINSIC
coiled coil region 72 113 N/A INTRINSIC
low complexity region 123 139 N/A INTRINSIC
low complexity region 217 224 N/A INTRINSIC
Pfam:DUF1253 325 634 6.9e-100 PFAM
Meta Mutation Damage Score 0.2570 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.7%
  • 10x: 97.6%
  • 20x: 96.0%
Validation Efficiency 93% (38/41)
Allele List at MGI
Other mutations in this stock
Total: 94 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700056E22Rik C T 1: 183,765,702 (GRCm39) S119N probably benign Het
4930503L19Rik T A 18: 70,600,997 (GRCm39) probably null Het
Adam18 T C 8: 25,137,869 (GRCm39) T324A probably benign Het
Adamts20 T A 15: 94,184,252 (GRCm39) Q1517L probably benign Het
AI429214 A G 8: 37,461,473 (GRCm39) Q207R probably benign Het
Arhgef7 A G 8: 11,869,659 (GRCm39) T432A possibly damaging Het
Atad2b A G 12: 5,081,784 (GRCm39) N1231S probably benign Het
Atp13a1 T C 8: 70,254,794 (GRCm39) probably null Het
Atp6v0a1 T A 11: 100,946,317 (GRCm39) L770* probably null Het
Atp8b3 T C 10: 80,370,032 (GRCm39) N127S probably damaging Het
B3gnt5 T A 16: 19,588,760 (GRCm39) D326E probably damaging Het
Birc6 T A 17: 74,872,856 (GRCm39) S372T probably damaging Het
Btbd9 T A 17: 30,518,607 (GRCm39) D451V probably damaging Het
Cd46 T C 1: 194,724,300 (GRCm39) *366W probably null Het
Cdcp3 T C 7: 130,839,911 (GRCm39) L611P probably damaging Het
Cdh18 T A 15: 23,474,081 (GRCm39) D650E probably damaging Het
Cenpc1 A T 5: 86,185,767 (GRCm39) V248E probably damaging Het
Cep152 A G 2: 125,436,819 (GRCm39) S574P probably benign Het
Chd2 A G 7: 73,128,412 (GRCm39) S858P probably damaging Het
Cib4 T C 5: 30,645,938 (GRCm39) D110G probably damaging Het
Col9a2 T A 4: 120,896,985 (GRCm39) probably null Het
Csmd2 A T 4: 128,389,981 (GRCm39) I2239F possibly damaging Het
Csmd3 C A 15: 47,522,485 (GRCm39) G2728V probably damaging Het
Cxcl1 A T 5: 91,039,626 (GRCm39) K85* probably null Het
Cyp2d11 A G 15: 82,273,730 (GRCm39) L416P possibly damaging Het
Daam1 A C 12: 71,962,558 (GRCm39) K90T unknown Het
Depdc5 T A 5: 33,144,310 (GRCm39) M1435K possibly damaging Het
Dip2c G A 13: 9,626,944 (GRCm39) A632T probably damaging Het
Dld A T 12: 31,384,053 (GRCm39) I350N probably damaging Het
Dmtf1 T A 5: 9,177,987 (GRCm39) I391F possibly damaging Het
Dnah14 T C 1: 181,579,710 (GRCm39) V3081A probably damaging Het
Efemp1 A G 11: 28,804,538 (GRCm39) E22G probably damaging Het
Ephb6 A G 6: 41,591,038 (GRCm39) D65G probably damaging Het
Fsip2 A T 2: 82,807,436 (GRCm39) T1252S probably benign Het
Gm4847 A G 1: 166,457,824 (GRCm39) S510P probably benign Het
Golga4 T C 9: 118,366,341 (GRCm39) I365T probably damaging Het
Gp2 A T 7: 119,053,766 (GRCm39) L65Q probably damaging Het
Ibtk T C 9: 85,625,630 (GRCm39) Y40C probably damaging Het
Ice1 C A 13: 70,750,546 (GRCm39) V1847L probably benign Het
Ift172 C T 5: 31,422,699 (GRCm39) R917H probably benign Het
Itgae C T 11: 73,029,335 (GRCm39) Q1037* probably null Het
Kbtbd7 A G 14: 79,664,870 (GRCm39) E234G possibly damaging Het
Khsrp T C 17: 57,332,576 (GRCm39) T235A probably benign Het
Klk13 T C 7: 43,370,582 (GRCm39) probably null Het
Lrfn5 G A 12: 61,890,223 (GRCm39) G504D probably damaging Het
Macf1 A G 4: 123,369,793 (GRCm39) V91A possibly damaging Het
Map6 G A 7: 98,985,950 (GRCm39) G821D possibly damaging Het
Mark1 A C 1: 184,653,801 (GRCm39) V167G probably damaging Het
Mrgprf T A 7: 144,861,993 (GRCm39) L185Q probably damaging Het
Mtor T A 4: 148,634,645 (GRCm39) V2422D probably damaging Het
Myh13 T A 11: 67,223,346 (GRCm39) I222N probably damaging Het
Myh7b G A 2: 155,462,347 (GRCm39) C350Y probably benign Het
Nfix G A 8: 85,453,155 (GRCm39) R300C probably damaging Het
Olfm3 C A 3: 114,895,635 (GRCm39) S172R probably benign Het
Or13e8 A G 4: 43,696,706 (GRCm39) S156P probably damaging Het
Or1j14 A G 2: 36,418,020 (GRCm39) I199V probably benign Het
Or4c1 A T 2: 89,133,528 (GRCm39) I136N probably damaging Het
Or5d40 A T 2: 88,015,322 (GRCm39) T34S probably benign Het
Or8b48 T A 9: 38,492,579 (GRCm39) V2D possibly damaging Het
Pacs1 A T 19: 5,193,857 (GRCm39) D557E probably damaging Het
Pde1c A G 6: 56,338,800 (GRCm39) F11L probably benign Het
Phactr2 T C 10: 13,122,883 (GRCm39) D343G possibly damaging Het
Piezo2 T C 18: 63,148,873 (GRCm39) Y2659C probably damaging Het
Pkd2l2 A G 18: 34,561,305 (GRCm39) T438A probably damaging Het
Pld2 T C 11: 70,447,907 (GRCm39) W857R probably damaging Het
Plxnb1 T C 9: 108,931,210 (GRCm39) V410A possibly damaging Het
Pramel26 T C 4: 143,538,428 (GRCm39) Y181C probably damaging Het
Ptger2 A G 14: 45,226,957 (GRCm39) Y179C probably damaging Het
Ptpro T A 6: 137,420,592 (GRCm39) V1007D probably damaging Het
Rcan1 A T 16: 92,190,408 (GRCm39) M177K probably benign Het
Rilpl1 A G 5: 124,639,951 (GRCm39) I122T possibly damaging Het
Rilpl1 A G 5: 124,639,934 (GRCm39) S156P probably benign Het
Rims4 C T 2: 163,705,849 (GRCm39) V262M possibly damaging Het
Rpa1 C T 11: 75,203,799 (GRCm39) probably null Het
Saxo2 A G 7: 82,284,078 (GRCm39) V260A probably benign Het
Sel1l T C 12: 91,791,634 (GRCm39) Y309C probably damaging Het
Setd1b GCCCCCCC GCCCCCCCCCCCCC 5: 123,298,766 (GRCm39) probably benign Het
Slc33a1 A G 3: 63,850,725 (GRCm39) F533S probably benign Het
Slc38a4 C T 15: 96,903,739 (GRCm39) V421M probably benign Het
Snx14 A G 9: 88,282,774 (GRCm39) probably null Het
Spef2 A G 15: 9,716,482 (GRCm39) F368S probably damaging Het
Sri A T 5: 8,109,381 (GRCm39) Q55L probably damaging Het
Stat4 A G 1: 52,135,979 (GRCm39) I429M probably damaging Het
Stkld1 A T 2: 26,841,462 (GRCm39) Q469L probably benign Het
Tm9sf1 T C 14: 55,880,392 (GRCm39) T2A possibly damaging Het
Tmco5 A G 2: 116,713,699 (GRCm39) T122A probably benign Het
Tmem59l G A 8: 70,938,710 (GRCm39) P124S possibly damaging Het
Tmem81 G A 1: 132,435,662 (GRCm39) R156Q probably damaging Het
Trpv6 T A 6: 41,602,122 (GRCm39) T396S probably benign Het
Usp24 T A 4: 106,228,276 (GRCm39) Y780* probably null Het
Vmn1r120 A G 7: 20,786,941 (GRCm39) C257R probably damaging Het
Vmn2r53 A G 7: 12,335,319 (GRCm39) F114L probably damaging Het
Vwf A G 6: 125,619,969 (GRCm39) E1549G probably damaging Het
Zfp626 G A 7: 27,517,907 (GRCm39) R296H probably damaging Het
Other mutations in Utp25
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00754:Utp25 APN 1 192,797,309 (GRCm39) missense probably damaging 1.00
IGL01700:Utp25 APN 1 192,800,573 (GRCm39) missense probably damaging 1.00
IGL02076:Utp25 APN 1 192,812,367 (GRCm39) missense probably damaging 1.00
IGL02121:Utp25 APN 1 192,800,586 (GRCm39) missense probably benign 0.05
IGL02666:Utp25 APN 1 192,789,904 (GRCm39) nonsense probably null
IGL02997:Utp25 APN 1 192,802,892 (GRCm39) missense probably benign 0.34
3-1:Utp25 UTSW 1 192,800,588 (GRCm39) missense probably benign 0.07
R0099:Utp25 UTSW 1 192,810,778 (GRCm39) missense probably damaging 1.00
R0395:Utp25 UTSW 1 192,805,984 (GRCm39) missense possibly damaging 0.69
R0502:Utp25 UTSW 1 192,797,136 (GRCm39) splice site probably benign
R0973:Utp25 UTSW 1 192,797,011 (GRCm39) missense probably damaging 0.98
R0974:Utp25 UTSW 1 192,797,011 (GRCm39) missense probably damaging 0.98
R1815:Utp25 UTSW 1 192,800,591 (GRCm39) missense probably benign 0.26
R1930:Utp25 UTSW 1 192,800,617 (GRCm39) missense probably damaging 1.00
R1931:Utp25 UTSW 1 192,800,617 (GRCm39) missense probably damaging 1.00
R1937:Utp25 UTSW 1 192,804,401 (GRCm39) missense probably damaging 1.00
R2847:Utp25 UTSW 1 192,810,759 (GRCm39) missense probably benign 0.41
R2848:Utp25 UTSW 1 192,810,759 (GRCm39) missense probably benign 0.41
R3412:Utp25 UTSW 1 192,810,810 (GRCm39) missense possibly damaging 0.93
R3414:Utp25 UTSW 1 192,810,810 (GRCm39) missense possibly damaging 0.93
R4471:Utp25 UTSW 1 192,812,445 (GRCm39) missense possibly damaging 0.68
R4627:Utp25 UTSW 1 192,790,003 (GRCm39) missense probably benign 0.00
R4644:Utp25 UTSW 1 192,810,788 (GRCm39) missense probably damaging 1.00
R4761:Utp25 UTSW 1 192,796,230 (GRCm39) missense probably damaging 1.00
R4791:Utp25 UTSW 1 192,810,575 (GRCm39) missense probably benign
R4793:Utp25 UTSW 1 192,796,116 (GRCm39) missense probably null 0.56
R4858:Utp25 UTSW 1 192,796,072 (GRCm39) missense probably damaging 1.00
R4944:Utp25 UTSW 1 192,797,262 (GRCm39) missense probably damaging 1.00
R5162:Utp25 UTSW 1 192,796,089 (GRCm39) missense probably damaging 1.00
R5347:Utp25 UTSW 1 192,810,687 (GRCm39) missense probably benign
R5837:Utp25 UTSW 1 192,800,701 (GRCm39) missense probably damaging 1.00
R6113:Utp25 UTSW 1 192,811,810 (GRCm39) missense probably null 0.01
R6455:Utp25 UTSW 1 192,810,684 (GRCm39) missense probably benign 0.07
R6563:Utp25 UTSW 1 192,800,698 (GRCm39) missense probably damaging 1.00
R6636:Utp25 UTSW 1 192,796,075 (GRCm39) missense probably damaging 1.00
R7018:Utp25 UTSW 1 192,797,163 (GRCm39) missense probably benign 0.06
R7037:Utp25 UTSW 1 192,803,031 (GRCm39) splice site probably null
R8027:Utp25 UTSW 1 192,800,530 (GRCm39) missense probably benign
R8042:Utp25 UTSW 1 192,796,980 (GRCm39) missense
R8092:Utp25 UTSW 1 192,802,671 (GRCm39) missense probably benign 0.00
R8243:Utp25 UTSW 1 192,796,937 (GRCm39) missense probably benign
R8691:Utp25 UTSW 1 192,796,110 (GRCm39) missense probably benign 0.41
R9485:Utp25 UTSW 1 192,812,541 (GRCm39) unclassified probably benign
RF021:Utp25 UTSW 1 192,802,974 (GRCm39) missense probably benign
X0050:Utp25 UTSW 1 192,806,040 (GRCm39) missense probably benign 0.23
Z1177:Utp25 UTSW 1 192,796,983 (GRCm39) missense probably damaging 1.00
Predicted Primers
Posted On 2017-12-01