Incidental Mutation 'R5298:Alms1-ps1'
ID 500924
Institutional Source Beutler Lab
Gene Symbol Alms1-ps1
Ensembl Gene ENSMUSG00000090256
Gene Name ALMS1, centrosome and basal body associated, pseudogene 1
Synonyms
MMRRC Submission 042881-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.151) question?
Stock # R5298 (G1)
Quality Score 105
Status Not validated
Chromosome 6
Chromosomal Location 85698907-85733508 bp(+) (GRCm39)
Type of Mutation intron
DNA Base Change (assembly) T to C at 85729100 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Gene Model predicted gene model for transcript(s):
AlphaFold no structure available at present
Predicted Effect noncoding transcript
Transcript: ENSMUST00000159498
Predicted Effect noncoding transcript
Transcript: ENSMUST00000201219
Coding Region Coverage
  • 1x: 99.3%
  • 3x: 98.6%
  • 10x: 97.1%
  • 20x: 94.6%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 36 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Ackr4 A G 9: 103,976,086 (GRCm39) V287A possibly damaging Het
Adat2 A G 10: 13,432,650 (GRCm39) N51D probably benign Het
Ccdc97 A G 7: 25,415,432 (GRCm39) V12A probably damaging Het
Cdcp2 T C 4: 106,964,182 (GRCm39) V344A probably benign Het
Clasp1 A G 1: 118,475,650 (GRCm39) D929G possibly damaging Het
Clip4 A G 17: 72,141,220 (GRCm39) N525D probably damaging Het
Csde1 T A 3: 102,954,525 (GRCm39) probably null Het
D330020A13Rik T C 6: 120,271,777 (GRCm39) probably benign Het
Dnah2 C T 11: 69,349,746 (GRCm39) R2399Q probably benign Het
Ehmt2 C T 17: 35,118,067 (GRCm39) R40* probably null Het
Fuca1 C A 4: 135,664,237 (GRCm39) Y374* probably null Het
Gle1 C G 2: 29,838,955 (GRCm39) P457A probably benign Het
Hadhb T C 5: 30,382,009 (GRCm39) probably null Het
Klhl18 G C 9: 110,265,195 (GRCm39) N335K possibly damaging Het
Lef1 A T 3: 130,988,316 (GRCm39) R294S possibly damaging Het
Lrriq4 G T 3: 30,699,481 (GRCm39) M1I probably null Het
Magi2 T C 5: 20,774,160 (GRCm39) S884P probably damaging Het
Mon2 A G 10: 122,846,511 (GRCm39) I1353T probably benign Het
Or4c127 T A 2: 89,832,804 (GRCm39) L18Q possibly damaging Het
Or5p81 A G 7: 108,267,279 (GRCm39) I219V probably benign Het
Parg C A 14: 31,924,210 (GRCm39) A3E probably damaging Het
Per3 A T 4: 151,113,666 (GRCm39) D297E probably damaging Het
Pkhd1l1 A T 15: 44,367,442 (GRCm39) Y780F probably benign Het
Plcg2 A G 8: 118,331,988 (GRCm39) Y858C probably benign Het
Prkca A T 11: 107,903,510 (GRCm39) N287K probably damaging Het
Qsox2 A C 2: 26,104,074 (GRCm39) S484A probably damaging Het
Reep4 G A 14: 70,785,637 (GRCm39) G225D possibly damaging Het
Scn4a T C 11: 106,230,212 (GRCm39) E532G probably damaging Het
Sfi1 A ATCTTCCCAAAGCCAGTGC 11: 3,103,384 (GRCm39) probably benign Het
Slc23a1 A G 18: 35,755,563 (GRCm39) probably null Het
Sowaha C T 11: 53,370,355 (GRCm39) R127Q probably benign Het
Spag9 T C 11: 93,990,961 (GRCm39) W626R probably damaging Het
Tasor2 T C 13: 3,645,613 (GRCm39) probably null Het
Trim45 A G 3: 100,832,787 (GRCm39) D340G probably damaging Het
Vmn1r193 A T 13: 22,403,725 (GRCm39) F89Y probably damaging Het
Zfp507 T C 7: 35,475,421 (GRCm39) N931D probably damaging Het
Other mutations in Alms1-ps1
AlleleSourceChrCoordTypePredicted EffectPPH Score
R4354:Alms1-ps1 UTSW 6 85,732,617 (GRCm39) intron noncoding transcript
R5418:Alms1-ps1 UTSW 6 85,732,584 (GRCm39) intron noncoding transcript
R5949:Alms1-ps1 UTSW 6 85,698,943 (GRCm39) exon noncoding transcript
Predicted Primers PCR Primer
(F):5'- TCTGACCCCTAAGGCAGTTCAG -3'
(R):5'- GTCTAATGCAGAGAAGCTCACCC -3'

Sequencing Primer
(F):5'- CCCCTAAGGCAGTTCAGAAGTG -3'
(R):5'- AGAAGCTCACCCTAGGCGTTC -3'
Posted On 2017-12-01