Incidental Mutation 'R5300:Scamp1'
| ID |
500930 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Scamp1
|
| Ensembl Gene |
ENSMUSG00000021687 |
| Gene Name |
secretory carrier membrane protein 1 |
| Synonyms |
4930505M11Rik |
| MMRRC Submission |
042883-MU
|
| Accession Numbers |
|
| Essential gene? |
Non essential
(E-score: 0.000)
|
| Stock # |
R5300 (G1)
|
| Quality Score |
225 |
|
Status
|
Not validated
|
| Chromosome |
13 |
| Chromosomal Location |
94337818-94422339 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to G
at 94340670 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Valine to Alanine
at position 233
(V233A)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000123135
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000022197]
[ENSMUST00000152555]
[ENSMUST00000153558]
|
| AlphaFold |
Q8K021 |
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000022197
AA Change: V285A
PolyPhen 2
Score 0.991 (Sensitivity: 0.71; Specificity: 0.97)
|
| SMART Domains |
Protein: ENSMUSP00000022197
Gene: ENSMUSG00000021687
AA Change: V285A
| Domain | Start | End | E-Value | Type |
|---|
|
coiled coil region
|
75 |
114 |
N/A |
INTRINSIC |
|
Pfam:SCAMP
|
117 |
292 |
7.4e-74 |
PFAM |
|
low complexity region
|
314 |
332 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000152555
AA Change: V233A
PolyPhen 2
Score 0.991 (Sensitivity: 0.71; Specificity: 0.97)
|
| SMART Domains |
Protein: ENSMUSP00000123135
Gene: ENSMUSG00000021687
AA Change: V233A
| Domain | Start | End | E-Value | Type |
|---|
|
coiled coil region
|
23 |
62 |
N/A |
INTRINSIC |
|
Pfam:SCAMP
|
64 |
241 |
2.3e-78 |
PFAM |
|
low complexity region
|
262 |
280 |
N/A |
INTRINSIC |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000153558
AA Change: V233A
PolyPhen 2
Score 0.948 (Sensitivity: 0.79; Specificity: 0.95)
|
| SMART Domains |
Protein: ENSMUSP00000120053
Gene: ENSMUSG00000021687
AA Change: V233A
| Domain | Start | End | E-Value | Type |
|---|
|
coiled coil region
|
23 |
62 |
N/A |
INTRINSIC |
|
Pfam:SCAMP
|
64 |
241 |
2.3e-78 |
PFAM |
|
low complexity region
|
262 |
280 |
N/A |
INTRINSIC |
|
| Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.5%
- 10x: 96.6%
- 20x: 93.1%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene product belongs to the SCAMP family of proteins, which are secretory carrier membrane proteins. They function as carriers to the cell surface in post-golgi recycling pathways. Different family members are highly related products of distinct genes, and are usually expressed together. These findings suggest that these protein family members may function at the same site during vesicular transport rather than in separate pathways. A pseudogene of this gene has been defined on chromosome 1. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Mar 2014]
PHENOTYPE: Mice homozygous for a targeted null mutation do not exhibit any overt abnormalities, but final cell capacitance of mast cells completing exocytosis was smaller than controls and an increased proportion of reversible fusion events was noted. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 28 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Ank1 |
A |
G |
8: 23,622,517 (GRCm39) |
K1644E |
probably benign |
Het |
| C7 |
C |
A |
15: 5,061,432 (GRCm39) |
G306W |
probably damaging |
Het |
| Ccdc185 |
A |
G |
1: 182,575,645 (GRCm39) |
V348A |
probably benign |
Het |
| Cfap58 |
A |
T |
19: 47,929,595 (GRCm39) |
I19F |
probably benign |
Het |
| Dnaaf2 |
C |
G |
12: 69,245,002 (GRCm39) |
V20L |
probably damaging |
Het |
| Dpy19l3 |
A |
G |
7: 35,426,735 (GRCm39) |
Y58H |
probably damaging |
Het |
| Dsc1 |
T |
C |
18: 20,227,917 (GRCm39) |
S480G |
probably damaging |
Het |
| Eno4 |
G |
A |
19: 58,943,982 (GRCm39) |
|
probably null |
Het |
| Gm136 |
T |
G |
4: 34,750,930 (GRCm39) |
K114N |
probably damaging |
Het |
| Hjurp |
GT |
GTT |
1: 88,194,246 (GRCm39) |
|
probably null |
Het |
| Lgr6 |
C |
T |
1: 134,921,748 (GRCm39) |
A199T |
probably damaging |
Het |
| Lrrc37a |
T |
A |
11: 103,347,784 (GRCm39) |
L2970F |
unknown |
Het |
| Ly86 |
C |
T |
13: 37,602,588 (GRCm39) |
T160I |
probably benign |
Het |
| Mfsd4b1 |
A |
C |
10: 39,879,027 (GRCm39) |
F290C |
probably benign |
Het |
| Minar1 |
A |
T |
9: 89,485,252 (GRCm39) |
S48R |
probably damaging |
Het |
| Nbeal1 |
T |
G |
1: 60,274,718 (GRCm39) |
Y376* |
probably null |
Het |
| Nipbl |
A |
T |
15: 8,380,981 (GRCm39) |
S604T |
probably benign |
Het |
| Pml |
A |
C |
9: 58,154,302 (GRCm39) |
N190K |
probably damaging |
Het |
| Rin3 |
C |
A |
12: 102,335,929 (GRCm39) |
F533L |
probably benign |
Het |
| Sppl2c |
A |
T |
11: 104,077,901 (GRCm39) |
N234Y |
possibly damaging |
Het |
| Tfap2b |
A |
G |
1: 19,298,677 (GRCm39) |
K278R |
probably damaging |
Het |
| Tg |
A |
G |
15: 66,550,704 (GRCm39) |
Y278C |
probably damaging |
Het |
| Trdn |
A |
G |
10: 33,071,978 (GRCm39) |
E215G |
probably damaging |
Het |
| Tssk6 |
T |
C |
8: 70,355,285 (GRCm39) |
S110P |
probably benign |
Het |
| Vmn2r15 |
A |
T |
5: 109,441,974 (GRCm39) |
L153Q |
probably damaging |
Het |
| Wdr17 |
C |
T |
8: 55,134,434 (GRCm39) |
G349R |
probably damaging |
Het |
| Zfp667 |
A |
G |
7: 6,307,635 (GRCm39) |
H101R |
probably benign |
Het |
| Zfp772 |
A |
T |
7: 7,207,157 (GRCm39) |
M178K |
probably benign |
Het |
|
| Other mutations in Scamp1 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01447:Scamp1
|
APN |
13 |
94,340,530 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02269:Scamp1
|
APN |
13 |
94,368,694 (GRCm39) |
splice site |
probably benign |
|
|
R0067:Scamp1
|
UTSW |
13 |
94,340,658 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0067:Scamp1
|
UTSW |
13 |
94,340,658 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0254:Scamp1
|
UTSW |
13 |
94,347,088 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0367:Scamp1
|
UTSW |
13 |
94,347,088 (GRCm39) |
missense |
probably benign |
0.01 |
|
R0559:Scamp1
|
UTSW |
13 |
94,344,690 (GRCm39) |
missense |
possibly damaging |
0.79 |
|
R1147:Scamp1
|
UTSW |
13 |
94,361,394 (GRCm39) |
splice site |
probably null |
|
|
R1400:Scamp1
|
UTSW |
13 |
94,361,455 (GRCm39) |
missense |
possibly damaging |
0.53 |
|
R1499:Scamp1
|
UTSW |
13 |
94,361,437 (GRCm39) |
missense |
probably benign |
0.03 |
|
R5206:Scamp1
|
UTSW |
13 |
94,368,615 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5259:Scamp1
|
UTSW |
13 |
94,368,594 (GRCm39) |
missense |
probably benign |
|
|
R6128:Scamp1
|
UTSW |
13 |
94,344,735 (GRCm39) |
missense |
possibly damaging |
0.80 |
|
R7017:Scamp1
|
UTSW |
13 |
94,361,423 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R7219:Scamp1
|
UTSW |
13 |
94,361,415 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7242:Scamp1
|
UTSW |
13 |
94,369,648 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7993:Scamp1
|
UTSW |
13 |
94,366,294 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R9095:Scamp1
|
UTSW |
13 |
94,369,598 (GRCm39) |
missense |
probably benign |
0.01 |
|
R9169:Scamp1
|
UTSW |
13 |
94,389,533 (GRCm39) |
missense |
probably benign |
0.00 |
|
R9186:Scamp1
|
UTSW |
13 |
94,344,682 (GRCm39) |
missense |
possibly damaging |
0.66 |
|
| Predicted Primers |
PCR Primer
(F):5'- AACAGAGAACTGCTTCCAGGC -3'
(R):5'- ACTGTCTTTGAAGGCGCTG -3'
Sequencing Primer
(F):5'- AGGCTCGCTACATCTGGTTAC -3'
(R):5'- GTCGCCGTTAATCCCACTATGG -3'
|
| Posted On |
2017-12-01 |
Incidental Mutation