Mutagenetix > Incidental Mutation

Incidental Mutation 'R5377:Gm9920'

500984

Institutional Source

Beutler Lab

Gene Symbol

Gm9920

Ensembl Gene

ENSMUSG00000053749

Gene Name

predicted gene 9920

Synonyms

MMRRC Submission

042845-MU

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.070) question?

Stock #

R5377 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

55099917-55113677 bp(-) (GRCm38)

Type of Mutation

unclassified

DNA Base Change (assembly)

A to G at 55108975 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000098225 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000096433] [ENSMUST00000100659] [ENSMUST00000100660] [ENSMUST00000110230]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000096433

SMART Domains

Protein: ENSMUSP00000094167
Gene: ENSMUSG00000022419

Domain	Start	End	E-Value	Type
low complexity region	4	21	N/A	INTRINSIC
DEP	45	119	3.86e-21	SMART
DEP	146	219	1.37e-17	SMART
low complexity region	274	299	N/A	INTRINSIC
PDZ	338	407	8.28e-7	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000100659

SMART Domains

Protein: ENSMUSP00000098224
Gene: ENSMUSG00000053749

Domain	Start	End	E-Value	Type
low complexity region	24	50	N/A	INTRINSIC
low complexity region	57	67	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000100660

SMART Domains

Protein: ENSMUSP00000098225
Gene: ENSMUSG00000022419

Domain	Start	End	E-Value	Type
low complexity region	4	21	N/A	INTRINSIC
DEP	45	119	3.86e-21	SMART
DEP	146	219	1.37e-17	SMART
low complexity region	274	299	N/A	INTRINSIC
Blast:PDZ	338	367	7e-14	BLAST

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000110230

SMART Domains

Protein: ENSMUSP00000105859
Gene: ENSMUSG00000053749

Domain	Start	End	E-Value	Type
low complexity region	24	50	N/A	INTRINSIC
low complexity region	57	67	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000137301

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000148544

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.4%
20x: 95.5%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 62 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A2m	G	T	6: 121,645,253	V372F	probably benign	Het
Adcy10	G	A	1: 165,519,895	C393Y	probably damaging	Het
Adgrg7	A	C	16: 56,730,306	I681S	possibly damaging	Het
Akap8l	T	C	17: 32,321,511		probably benign	Het
Akr1a1	A	T	4: 116,639,895	V156E	probably damaging	Het
Alk	T	G	17: 71,895,739	D1167A	probably damaging	Het
Ankrd11	T	C	8: 122,893,714		probably null	Het
Aspm	T	A	1: 139,457,483	N288K	probably damaging	Het
Aspm	A	G	1: 139,470,395		probably null	Het
Asxl2	G	A	12: 3,474,618		probably null	Het
Atp6v0a1	A	G	11: 101,055,587	H802R	probably damaging	Het
B4galnt1	A	G	10: 127,171,822	T531A	possibly damaging	Het
Ccdc114	C	T	7: 45,942,082	R257*	probably null	Het
Cecr2	A	G	6: 120,756,569	N506D	possibly damaging	Het
Crebrf	T	C	17: 26,759,865	V509A	probably damaging	Het
Cyp4f40	A	T	17: 32,675,616	I413F	probably null	Het
Defb12	C	A	8: 19,114,326		probably null	Het
Dnah2	T	C	11: 69,421,848	E4297G	probably damaging	Het
Dpysl5	A	T	5: 30,791,513	N371Y	probably damaging	Het
Eef1d	G	T	15: 75,903,189	T207N	probably benign	Het
Esrrb	C	T	12: 86,519,009	Q416*	probably null	Het
Exd2	T	C	12: 80,489,448	L284P	probably damaging	Het
Fat3	T	A	9: 16,376,443	I595F	probably benign	Het
Hephl1	T	C	9: 15,069,788	K783E	probably damaging	Het
Irs2	A	G	8: 11,005,277	S1052P	probably benign	Het
Kctd18	T	C	1: 57,963,093	I192V	probably benign	Het
Lama3	A	G	18: 12,453,746	D722G	probably damaging	Het
Lepr	T	C	4: 101,815,019	V1080A	possibly damaging	Het
Lpin1	C	T	12: 16,563,655	G504S	probably damaging	Het
Lrit2	A	C	14: 37,069,183	Q273P	possibly damaging	Het
Mgea5	A	T	19: 45,758,022	Y779*	probably null	Het
Mlkl	T	A	8: 111,327,937	E189D	probably benign	Het
Mttp	C	T	3: 138,105,029	R608H	probably benign	Het
Nav2	T	C	7: 49,589,160	V2011A	probably benign	Het
Nos2	A	T	11: 78,957,491	I1075F	probably benign	Het
Npat	A	G	9: 53,550,036		probably null	Het
Nucks1	T	C	1: 131,919,033	F16L	probably damaging	Het
Nus1	T	C	10: 52,429,213	S150P	possibly damaging	Het
Olfr1230	G	T	2: 89,297,162	T36K	probably damaging	Het
Olfr881	A	T	9: 37,992,612	Y40F	probably benign	Het
Pclo	A	G	5: 14,681,353	T3290A	unknown	Het
Pign	A	T	1: 105,657,812	F4Y	probably benign	Het
Rfx4	A	G	10: 84,860,542	N233D	possibly damaging	Het
Rpgrip1	A	T	14: 52,160,195	M1325L	possibly damaging	Het
Rufy4	T	C	1: 74,147,663	C537R	probably damaging	Het
Scaf11	T	A	15: 96,417,120	H1227L	possibly damaging	Het
Sec31b	G	T	19: 44,518,637	P840T	probably damaging	Het
Slc16a9	T	A	10: 70,283,128	L426I	probably damaging	Het
Slc17a2	T	C	13: 23,812,592	S27P	probably damaging	Het
Slc22a30	G	A	19: 8,344,393	Q436*	probably null	Het
Tacc1	A	G	8: 25,182,283	S310P	possibly damaging	Het
Tmem245	G	A	4: 56,947,084	R110C	probably damaging	Het
Trip12	T	C	1: 84,757,431	Y953C	probably damaging	Het
Trpm7	C	A	2: 126,842,855		probably null	Het
Ush2a	G	A	1: 188,912,123	V4561I	probably benign	Het
Vmn1r192	C	T	13: 22,187,631	V140I	probably benign	Het
Vmn2r66	A	T	7: 85,006,818	I330N	probably damaging	Het
Vmn2r99	T	C	17: 19,379,269	V405A	probably damaging	Het
Wdhd1	A	C	14: 47,272,221	V172G	probably benign	Het
Zfhx3	C	T	8: 108,951,185	R2956C	possibly damaging	Het
Zfp446	T	C	7: 12,982,251	L283P	possibly damaging	Het
Zfp82	T	C	7: 30,057,166	K164E	probably damaging	Het

Other mutations in Gm9920

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
R0233:Gm9920	UTSW	15	55112461	utr 5 prime	probably benign
R2902:Gm9920	UTSW	15	55112471	utr 5 prime	probably benign
R4025:Gm9920	UTSW	15	55112570	missense	probably benign	0.03
R5366:Gm9920	UTSW	15	55112309	unclassified	probably benign

Predicted Primers

PCR Primer
(F):5'- TCTGGATGTGTGGTACCCATCC -3'
(R):5'- GTGTCTGCATTTCCAGGTGC -3'

Sequencing Primer
(F):5'- GATGTGTGGTACCCATCCCAGATAAC -3'
(R):5'- GCATTTCCAGGTGCTCAAAG -3'

Posted On

2017-12-01