Incidental Mutation 'R6130:Hmg20a'
ID 501812
Institutional Source Beutler Lab
Gene Symbol Hmg20a
Ensembl Gene ENSMUSG00000032329
Gene Name high mobility group 20A
Synonyms 5730490E10Rik, Hmgxb1, 1200004E06Rik
MMRRC Submission 044277-MU
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # R6130 (G1)
Quality Score 102.008
Status Validated
Chromosome 9
Chromosomal Location 56325893-56404220 bp(+) (GRCm39)
Type of Mutation splice site
DNA Base Change (assembly) T to A at 56395891 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000149359 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000034879] [ENSMUST00000034879] [ENSMUST00000215269] [ENSMUST00000217518]
AlphaFold Q9DC33
Predicted Effect probably null
Transcript: ENSMUST00000034879
SMART Domains Protein: ENSMUSP00000034879
Gene: ENSMUSG00000032329

DomainStartEndE-ValueType
low complexity region 80 94 N/A INTRINSIC
HMG 101 171 1.86e-21 SMART
coiled coil region 228 272 N/A INTRINSIC
Predicted Effect probably null
Transcript: ENSMUST00000034879
SMART Domains Protein: ENSMUSP00000034879
Gene: ENSMUSG00000032329

DomainStartEndE-ValueType
low complexity region 80 94 N/A INTRINSIC
HMG 101 171 1.86e-21 SMART
coiled coil region 228 272 N/A INTRINSIC
Predicted Effect probably null
Transcript: ENSMUST00000215269
Predicted Effect probably null
Transcript: ENSMUST00000217518
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.6%
  • 10x: 98.0%
  • 20x: 94.1%
Validation Efficiency 96% (46/48)
Allele List at MGI
Other mutations in this stock
Total: 49 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4930553M12Rik T C 4: 88,786,596 (GRCm39) I7M unknown Het
Abi3 T A 11: 95,727,921 (GRCm39) E90V probably damaging Het
Adgrv1 A C 13: 81,575,864 (GRCm39) V4834G probably damaging Het
Aen A T 7: 78,552,387 (GRCm39) probably null Het
Ankrd55 A G 13: 112,454,980 (GRCm39) D26G probably damaging Het
Antxr2 T C 5: 98,152,131 (GRCm39) E160G possibly damaging Het
Auts2 T C 5: 131,469,061 (GRCm39) H528R probably damaging Het
Casd1 A G 6: 4,641,948 (GRCm39) T742A probably damaging Het
Ccdc39 T C 3: 33,895,341 (GRCm39) probably null Het
Ctla4 T C 1: 60,951,650 (GRCm39) Y60H probably damaging Het
Dennd4b T C 3: 90,183,566 (GRCm39) L935P probably damaging Het
Dnah6 T A 6: 73,165,477 (GRCm39) T543S probably benign Het
Dnai3 A C 3: 145,748,559 (GRCm39) Y852D probably benign Het
Dnase1l1 C T X: 73,320,644 (GRCm39) probably null Het
Fbxo6 A T 4: 148,233,979 (GRCm39) I39N probably damaging Het
Fdxacb1 C T 9: 50,683,902 (GRCm39) R420* probably null Het
Flg A G 3: 93,200,023 (GRCm39) probably benign Het
Fpr1 T A 17: 18,097,897 (GRCm39) I31F probably benign Het
Gm10549 C A 18: 33,597,358 (GRCm39) probably benign Het
Gsta1 T A 9: 78,149,847 (GRCm39) F220Y probably damaging Het
Igf2bp1 A C 11: 95,864,846 (GRCm39) L201R probably damaging Het
Jph3 G A 8: 122,479,826 (GRCm39) R168H probably damaging Het
Kif1a T A 1: 92,964,623 (GRCm39) I1318F probably damaging Het
Lamc2 T C 1: 153,012,523 (GRCm39) N717S probably benign Het
Lepr A T 4: 101,622,569 (GRCm39) S450C probably damaging Het
Muc16 A G 9: 18,501,994 (GRCm39) V6535A probably damaging Het
Myom3 A G 4: 135,489,882 (GRCm39) T18A probably benign Het
Nlrp5 A G 7: 23,103,598 (GRCm39) K22E probably benign Het
Obscn A C 11: 58,968,771 (GRCm39) S2534A possibly damaging Het
Or1j21 A T 2: 36,684,055 (GRCm39) D269V probably benign Het
Or2ak5 A G 11: 58,611,133 (GRCm39) V247A probably damaging Het
Pcdhga8 T A 18: 37,860,580 (GRCm39) N545K possibly damaging Het
Pcsk5 A T 19: 17,488,920 (GRCm39) Y967N probably damaging Het
Robo2 C T 16: 73,717,570 (GRCm39) G100S probably benign Het
Rsf1 G A 7: 97,229,117 (GRCm39) probably benign Het
Saxo4 G A 19: 10,455,128 (GRCm39) P233L probably benign Het
Scap A G 9: 110,209,447 (GRCm39) T707A possibly damaging Het
Scarf1 A G 11: 75,416,565 (GRCm39) Q669R probably benign Het
Scin T C 12: 40,119,435 (GRCm39) D531G probably benign Het
Sh2b3 T C 5: 121,953,626 (GRCm39) probably null Het
Slco1a6 T C 6: 142,032,155 (GRCm39) S657G probably benign Het
Stil T A 4: 114,887,058 (GRCm39) probably null Het
Syna T A 5: 134,587,122 (GRCm39) Q609L possibly damaging Het
Tmem59l A G 8: 70,937,255 (GRCm39) S271P probably damaging Het
Tns2 A G 15: 102,019,676 (GRCm39) E522G probably damaging Het
Trappc6a G A 7: 19,249,219 (GRCm39) A149T probably benign Het
Trim21 A T 7: 102,212,498 (GRCm39) L156H possibly damaging Het
Trpv3 A G 11: 73,187,309 (GRCm39) R714G possibly damaging Het
Zfp87 T A 13: 74,520,460 (GRCm39) Q206L possibly damaging Het
Other mutations in Hmg20a
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01305:Hmg20a APN 9 56,394,934 (GRCm39) missense probably damaging 1.00
IGL01981:Hmg20a APN 9 56,384,514 (GRCm39) missense probably damaging 1.00
IGL02085:Hmg20a APN 9 56,384,586 (GRCm39) nonsense probably null
IGL03284:Hmg20a APN 9 56,388,901 (GRCm39) missense probably benign 0.25
ANU22:Hmg20a UTSW 9 56,394,934 (GRCm39) missense probably damaging 1.00
P0033:Hmg20a UTSW 9 56,397,108 (GRCm39) missense probably benign 0.01
R0369:Hmg20a UTSW 9 56,394,934 (GRCm39) missense probably damaging 1.00
R0710:Hmg20a UTSW 9 56,381,954 (GRCm39) missense possibly damaging 0.84
R1405:Hmg20a UTSW 9 56,384,587 (GRCm39) missense possibly damaging 0.66
R1405:Hmg20a UTSW 9 56,384,587 (GRCm39) missense possibly damaging 0.66
R1546:Hmg20a UTSW 9 56,374,685 (GRCm39) missense possibly damaging 0.56
R2188:Hmg20a UTSW 9 56,384,584 (GRCm39) missense possibly damaging 0.93
R4730:Hmg20a UTSW 9 56,374,703 (GRCm39) missense possibly damaging 0.85
R4956:Hmg20a UTSW 9 56,388,948 (GRCm39) missense probably damaging 1.00
R6115:Hmg20a UTSW 9 56,397,116 (GRCm39) missense possibly damaging 0.95
R6152:Hmg20a UTSW 9 56,388,892 (GRCm39) missense probably damaging 1.00
R6961:Hmg20a UTSW 9 56,396,012 (GRCm39) missense probably benign 0.29
R7499:Hmg20a UTSW 9 56,396,227 (GRCm39) missense unknown
R9567:Hmg20a UTSW 9 56,384,472 (GRCm39) missense probably benign 0.06
R9689:Hmg20a UTSW 9 56,381,823 (GRCm39) missense possibly damaging 0.68
Predicted Primers PCR Primer
(F):5'- GGAATTACCACTGTTTGTTGTAGTC -3'
(R):5'- CGAAGCTGCTGGTCAACATC -3'

Sequencing Primer
(F):5'- ACCACTGTTTGTTGTAGTCTTGTG -3'
(R):5'- TGCTGGTCAACATCTGCCG -3'
Posted On 2017-12-04