Incidental Mutation 'R6189:Ripk1'
ID502411
Institutional Source Beutler Lab
Gene Symbol Ripk1
Ensembl Gene ENSMUSG00000021408
Gene Namereceptor (TNFRSF)-interacting serine-threonine kinase 1
SynonymsRinp, Rip1
MMRRC Submission 044329-MU
Accession Numbers
Is this an essential gene? Essential (E-score: 1.000) question?
Stock #R6189 (G1)
Quality Score225.009
Status Validated
Chromosome13
Chromosomal Location34002363-34037147 bp(+) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) A to G at 34032501 bp
ZygosityHeterozygous
Amino Acid Change Threonine to Alanine at position 564 (T564A)
Ref Sequence ENSEMBL: ENSMUSP00000129831 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000021844] [ENSMUST00000167374]
Predicted Effect probably benign
Transcript: ENSMUST00000021844
AA Change: T564A

PolyPhen 2 Score 0.163 (Sensitivity: 0.92; Specificity: 0.87)
SMART Domains Protein: ENSMUSP00000021844
Gene: ENSMUSG00000021408
AA Change: T564A

DomainStartEndE-ValueType
Pfam:Pkinase_Tyr 17 286 1.2e-52 PFAM
Pfam:Pkinase 18 286 6.2e-51 PFAM
Pfam:Kinase-like 84 247 7.4e-8 PFAM
Pfam:RHIM 480 538 5.9e-10 PFAM
DEATH 558 654 1.2e-25 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000163843
Predicted Effect probably benign
Transcript: ENSMUST00000167374
AA Change: T564A

PolyPhen 2 Score 0.163 (Sensitivity: 0.92; Specificity: 0.87)
SMART Domains Protein: ENSMUSP00000129831
Gene: ENSMUSG00000021408
AA Change: T564A

DomainStartEndE-ValueType
Pfam:Pkinase_Tyr 17 286 5.2e-54 PFAM
Pfam:Pkinase 18 286 1.1e-53 PFAM
Pfam:RHIM 493 539 5.2e-16 PFAM
DEATH 558 654 1.2e-25 SMART
Predicted Effect unknown
Transcript: ENSMUST00000171137
AA Change: T504A
SMART Domains Protein: ENSMUSP00000128511
Gene: ENSMUSG00000021408
AA Change: T504A

DomainStartEndE-ValueType
Pfam:Pkinase_Tyr 4 116 2.6e-14 PFAM
Pfam:Pkinase 5 109 1.7e-14 PFAM
Pfam:Pkinase 92 227 2.9e-14 PFAM
Pfam:Pkinase_Tyr 94 227 2.9e-21 PFAM
Pfam:RHIM 421 479 2.3e-10 PFAM
DEATH 499 595 1.2e-25 SMART
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.5%
  • 20x: 98.5%
Validation Efficiency 97% (74/76)
MGI Phenotype PHENOTYPE: Mice homozygous for disruptions in this gene die within 1 and 3 days of birth displaying extensive apoptosis in both lymphoid and adipose tissue. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 78 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
A530064D06Rik A G 17: 48,167,054 probably benign Het
Abca8a T C 11: 110,030,884 D1448G probably damaging Het
Actn2 C T 13: 12,276,440 D693N probably damaging Het
Adam3 A C 8: 24,711,336 I267R probably benign Het
Akap2 A G 4: 57,855,928 E419G probably benign Het
Aldh1l2 A G 10: 83,508,013 probably null Het
C4bp T C 1: 130,636,819 Y376C probably damaging Het
Cacna1h A G 17: 25,397,844 W101R probably damaging Het
Ccdc84 G A 9: 44,410,321 R328C probably benign Het
Ccdc97 T A 7: 25,716,098 T47S probably benign Het
Cnot6l G A 5: 96,098,277 T171I probably benign Het
Cntnap2 T A 6: 47,271,298 S1213T probably damaging Het
Cxcl10 A T 5: 92,348,113 L55Q probably benign Het
Cyp1a1 T C 9: 57,700,683 V198A probably damaging Het
Dclre1b A G 3: 103,803,533 V354A probably damaging Het
Dmxl1 C T 18: 49,893,335 H1837Y probably benign Het
Dnajc13 G C 9: 104,213,886 D665E probably benign Het
Dnmbp T C 19: 43,890,309 T108A probably benign Het
Dnmbp T A 19: 43,901,511 T606S probably benign Het
Dok5 T A 2: 170,800,851 I23N probably damaging Het
Eml2 G A 7: 19,201,163 V432I probably damaging Het
Epha5 A T 5: 84,237,540 F311I probably damaging Het
Erbb4 T A 1: 68,043,916 M1059L probably benign Het
Fbxo40 A G 16: 36,966,164 I681T probably benign Het
Flg2 T A 3: 93,220,074 C2098S unknown Het
Gm10471 A G 5: 26,085,693 I160T probably benign Het
Gm11397 A T 13: 33,404,444 E337D probably benign Het
Gpr87 T A 3: 59,179,229 D285V probably damaging Het
Hrh1 T A 6: 114,479,998 V80D probably damaging Het
Hunk G A 16: 90,487,881 R351K probably benign Het
Ifna12 A G 4: 88,603,011 W100R probably damaging Het
Ift57 G A 16: 49,763,813 G310S probably damaging Het
Igf1r T A 7: 68,207,336 Y1015* probably null Het
Igkv14-130 T C 6: 67,791,448 I96T probably damaging Het
Il34 C T 8: 110,742,718 S155N probably benign Het
Itga7 T C 10: 128,950,403 S938P possibly damaging Het
Itgam A G 7: 128,112,504 M764V probably benign Het
Lao1 T A 4: 118,967,880 M299K probably benign Het
Lnpep A T 17: 17,566,739 S533T possibly damaging Het
Lrp4 T C 2: 91,475,234 V283A possibly damaging Het
Magi3 G T 3: 104,050,865 H635N probably damaging Het
Mecr A T 4: 131,865,254 probably null Het
Mgrn1 T C 16: 4,910,810 probably null Het
Micalcl A C 7: 112,412,880 N646H probably damaging Het
Mymk C T 2: 27,067,365 V39I possibly damaging Het
Nav3 T C 10: 109,720,019 S1684G probably damaging Het
Ntn5 A T 7: 45,693,220 D330V probably benign Het
Nupl2 G T 5: 24,175,454 G149V probably damaging Het
Nutm2 T A 13: 50,469,738 V157D possibly damaging Het
Obscn T C 11: 59,069,934 I3460V probably benign Het
Olfr1037 A T 2: 86,084,913 M288K possibly damaging Het
Pcdh15 C T 10: 74,342,651 A580V probably null Het
Pcdhb10 T A 18: 37,412,403 H177Q probably damaging Het
Pitx2 T C 3: 129,218,469 Y130H probably damaging Het
Pmch G T 10: 88,091,386 probably null Het
Pofut2 T A 10: 77,268,586 I399N probably damaging Het
Prr36 C A 8: 4,214,177 probably benign Het
Ptprq C A 10: 107,517,887 C2256F probably damaging Het
Rassf5 G A 1: 131,244,979 A51V probably damaging Het
Retnla A G 16: 48,842,895 I54V probably benign Het
Rimbp2 A G 5: 128,803,897 L142P probably benign Het
Robo4 G A 9: 37,403,533 E228K probably benign Het
Rsf1 GGCG GGCGACGGCTGCG 7: 97,579,906 probably benign Homo
Rusc1 A T 3: 89,089,012 L132Q probably damaging Het
Setd1a T C 7: 127,778,283 probably null Het
Slc38a6 A T 12: 73,310,196 K122M probably damaging Het
Susd5 A T 9: 114,095,658 D203V probably damaging Het
Trip4 G A 9: 65,879,152 R110* probably null Het
Tuba4a T A 1: 75,216,874 I95F probably benign Het
Ube2q2 T A 9: 55,162,983 S70T probably benign Het
Umodl1 A G 17: 30,996,282 I1027V possibly damaging Het
Unc80 G A 1: 66,677,471 V2917I probably benign Het
Vmn1r70 T A 7: 10,633,671 C29S probably benign Het
Vmn2r94 A T 17: 18,257,734 D138E probably benign Het
Wee2 C T 6: 40,449,683 H129Y probably damaging Het
Zfp318 TGAAGAAGAAGAAGAAGAAGAAGAAGAAG TGAAGAAGAAGAAGAAGAAGAAG 17: 46,412,514 probably benign Het
Zfp872 A T 9: 22,197,131 D42V probably benign Het
Zic5 T G 14: 122,464,974 D115A unknown Het
Other mutations in Ripk1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01443:Ripk1 APN 13 34015268 missense probably damaging 0.96
IGL01873:Ripk1 APN 13 34009724 missense probably damaging 1.00
IGL02383:Ripk1 APN 13 34015244 missense probably damaging 1.00
IGL02478:Ripk1 APN 13 34010589 missense probably damaging 1.00
R0115:Ripk1 UTSW 13 34009750 missense probably damaging 1.00
R0481:Ripk1 UTSW 13 34009750 missense probably damaging 1.00
R0630:Ripk1 UTSW 13 34027781 missense probably damaging 1.00
R1105:Ripk1 UTSW 13 34028167 missense probably benign
R1528:Ripk1 UTSW 13 34028147 missense probably benign 0.01
R1834:Ripk1 UTSW 13 34015213 missense probably benign 0.00
R2294:Ripk1 UTSW 13 34017008 missense probably benign
R2384:Ripk1 UTSW 13 34030043 missense probably benign 0.03
R4510:Ripk1 UTSW 13 34026748 missense probably damaging 1.00
R4511:Ripk1 UTSW 13 34026748 missense probably damaging 1.00
R4697:Ripk1 UTSW 13 34027942 nonsense probably null
R5078:Ripk1 UTSW 13 34017099 missense probably damaging 1.00
R5153:Ripk1 UTSW 13 34013296 missense probably damaging 1.00
R5974:Ripk1 UTSW 13 34030101 nonsense probably null
R6676:Ripk1 UTSW 13 34010604 missense probably damaging 1.00
R6905:Ripk1 UTSW 13 34027990 missense probably benign
R6997:Ripk1 UTSW 13 34017117 missense probably benign 0.00
R7009:Ripk1 UTSW 13 34030062 missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- GGTCAAGTATTGCCCAACAAGTC -3'
(R):5'- GCCACTTCTGAAGCATTTGG -3'

Sequencing Primer
(F):5'- GTGGTGCACACTATAATCCAAGTC -3'
(R):5'- GCCACTTCTGAAGCATTTGGTAAAC -3'
Posted On2018-02-27