Mutagenetix > Incidental Mutation

Incidental Mutation 'R6191:Stard10'

502560

Institutional Source

Beutler Lab

Gene Symbol

Stard10

Ensembl Gene

ENSMUSG00000030688

Gene Name

StAR related lipid transfer domain containing 10

Synonyms

Pctpl, TISP-81, PC-TP2, PCTP2, Sdccag28, CGI-52, NY-C0-28

MMRRC Submission

044331-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R6191 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

100966293-100995833 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 100992468 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Valine at position 145 (I145V)

Ref Sequence

ENSEMBL: ENSMUSP00000133955 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000032927] [ENSMUST00000107010] [ENSMUST00000163799] [ENSMUST00000164479] [ENSMUST00000172630] [ENSMUST00000173270] [ENSMUST00000210192]

AlphaFold

Q9JMD3

Predicted Effect

possibly damaging
Transcript: ENSMUST00000032927
AA Change: I145V

PolyPhen 2 Score 0.796 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000032927
Gene: ENSMUSG00000030688
AA Change: I145V

Domain	Start	End	E-Value	Type
START	21	226	8.7e-11	SMART
low complexity region	239	253	N/A	INTRINSIC
low complexity region	270	284	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000107010

SMART Domains

Protein: ENSMUSP00000102624
Gene: ENSMUSG00000032812

Domain	Start	End	E-Value	Type
SAM	3	70	1.72e-7	SMART
low complexity region	92	104	N/A	INTRINSIC
low complexity region	115	126	N/A	INTRINSIC
low complexity region	135	146	N/A	INTRINSIC
low complexity region	151	167	N/A	INTRINSIC
low complexity region	197	227	N/A	INTRINSIC
low complexity region	267	285	N/A	INTRINSIC
PH	330	423	2.62e-17	SMART
PH	443	533	3.6e-6	SMART
ArfGap	537	663	2.4e-22	SMART
PH	746	854	1.23e-13	SMART
PH	864	958	1.08e0	SMART
RhoGAP	970	1152	1.35e-63	SMART
Pfam:RA	1174	1263	1.9e-10	PFAM
PH	1277	1389	8.58e-13	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000163799
AA Change: I218V

PolyPhen 2 Score 0.915 (Sensitivity: 0.81; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000129408
Gene: ENSMUSG00000030688
AA Change: I218V

Domain	Start	End	E-Value	Type
low complexity region	2	38	N/A	INTRINSIC
low complexity region	41	48	N/A	INTRINSIC
START	94	299	8.7e-11	SMART
low complexity region	312	326	N/A	INTRINSIC
low complexity region	343	357	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000164479
AA Change: I145V

PolyPhen 2 Score 0.796 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000133002
Gene: ENSMUSG00000030688
AA Change: I145V

Domain	Start	End	E-Value	Type
START	21	226	8.7e-11	SMART
low complexity region	239	253	N/A	INTRINSIC
low complexity region	270	284	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000167888
AA Change: I163V

PolyPhen 2 Score 0.161 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000127962
Gene: ENSMUSG00000030688
AA Change: I163V

Domain	Start	End	E-Value	Type
Pfam:START	46	223	8.5e-23	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000172630
AA Change: I145V

PolyPhen 2 Score 0.962 (Sensitivity: 0.78; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000134138
Gene: ENSMUSG00000030688
AA Change: I145V

Domain	Start	End	E-Value	Type
Pfam:START	27	150	8e-8	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000172662

SMART Domains

Protein: ENSMUSP00000134156
Gene: ENSMUSG00000030688

Domain	Start	End	E-Value	Type
Blast:START	35	78	8e-22	BLAST

Predicted Effect

probably damaging
Transcript: ENSMUST00000173270
AA Change: I145V

PolyPhen 2 Score 0.962 (Sensitivity: 0.78; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000133955
Gene: ENSMUSG00000030688
AA Change: I145V

Domain	Start	End	E-Value	Type
Pfam:START	27	159	7.7e-10	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000174291
AA Change: I136V

PolyPhen 2 Score 0.110 (Sensitivity: 0.93; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000133985
Gene: ENSMUSG00000030688
AA Change: I136V

Domain	Start	End	E-Value	Type
low complexity region	6	13	N/A	INTRINSIC
START	14	218	2.16e-6	SMART
low complexity region	231	245	N/A	INTRINSIC
low complexity region	262	276	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000210192
AA Change: I145V

PolyPhen 2 Score 0.796 (Sensitivity: 0.84; Specificity: 0.93)

Predicted Effect

probably benign
Transcript: ENSMUST00000174140

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000174083

SMART Domains

Protein: ENSMUSP00000134724
Gene: ENSMUSG00000030688

Domain	Start	End	E-Value	Type
Pfam:START	6	157	4.3e-19	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000209980

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000211610

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.8%

Validation Efficiency

99% (84/85)

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele exhibit altered bile acid homeostasis. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 84 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930563M21Rik	A	C	9: 55,909,807 (GRCm39)	D144E	possibly damaging	Het
Amigo2	T	A	15: 97,143,419 (GRCm39)	K334N	probably benign	Het
Ano6	T	C	15: 95,846,380 (GRCm39)		probably null	Het
Ap1m2	C	A	9: 21,210,601 (GRCm39)	V343F	probably benign	Het
Apol6	T	C	15: 76,940,098 (GRCm39)	V307A	probably benign	Het
Arsi	C	A	18: 61,045,544 (GRCm39)	A78E	probably damaging	Het
B2m	A	T	2: 121,981,396 (GRCm39)	N37I	possibly damaging	Het
Bltp3b	G	T	10: 89,641,180 (GRCm39)	G784C	possibly damaging	Het
C8a	T	C	4: 104,703,100 (GRCm39)	K363R	probably benign	Het
Ccdc117	C	A	11: 5,484,242 (GRCm39)		probably null	Het
Ccdc154	C	A	17: 25,386,945 (GRCm39)	Q325K	probably damaging	Het
Cd300e	A	T	11: 114,945,359 (GRCm39)	V145E	possibly damaging	Het
Col19a1	G	T	1: 24,356,474 (GRCm39)	P673Q	probably damaging	Het
Csn2	A	G	5: 87,843,885 (GRCm39)		probably null	Het
Ctnna1	T	C	18: 35,307,408 (GRCm39)	V135A	probably damaging	Het
Dnah11	T	A	12: 118,154,632 (GRCm39)	D216V	probably benign	Het
Dnah12	A	G	14: 26,431,412 (GRCm39)	H410R	probably benign	Het
Dock2	C	T	11: 34,181,652 (GRCm39)	R1637H	possibly damaging	Het
Dspp	A	G	5: 104,325,214 (GRCm39)	N526D	unknown	Het
Frem2	T	C	3: 53,562,701 (GRCm39)	H602R	probably benign	Het
Galc	A	T	12: 98,218,293 (GRCm39)	H186Q	probably damaging	Het
Grina	T	C	15: 76,133,218 (GRCm39)	V262A	probably damaging	Het
Gse1	G	A	8: 121,280,542 (GRCm39)		probably null	Het
H2-Oa	C	A	17: 34,312,842 (GRCm39)	Q40K	probably damaging	Het
Hfm1	C	A	5: 107,034,419 (GRCm39)	D763Y	possibly damaging	Het
Hmcn2	T	A	2: 31,348,758 (GRCm39)	Y4925N	probably damaging	Het
Hs3st3b1	C	A	11: 63,780,029 (GRCm39)	R366L	probably benign	Het
Idh2	TCCCAGG	T	7: 79,748,079 (GRCm39)		probably benign	Het
Iqank1	T	C	15: 75,918,218 (GRCm39)		probably null	Het
Itpr2	A	G	6: 146,229,833 (GRCm39)	V1221A	probably benign	Het
Kdm6b	T	C	11: 69,297,584 (GRCm39)	N285S	probably benign	Het
Klk1b1	T	A	7: 43,620,081 (GRCm39)	N181K	probably damaging	Het
Kmt2a	C	A	9: 44,738,125 (GRCm39)		probably benign	Het
Lama5	T	C	2: 179,827,752 (GRCm39)	D2170G	probably damaging	Het
Lama5	T	A	2: 179,822,404 (GRCm39)	T2890S	probably damaging	Het
Lsm2	T	A	17: 35,201,131 (GRCm39)		probably benign	Het
Map3k5	G	T	10: 19,899,415 (GRCm39)	C232F	probably damaging	Het
Mapk9	T	G	11: 49,754,383 (GRCm39)	D45E	probably damaging	Het
Mpnd	T	C	17: 56,319,482 (GRCm39)	V315A	possibly damaging	Het
Msh2	A	G	17: 88,030,900 (GRCm39)	I926V	probably benign	Het
Mtcl1	C	T	17: 66,650,521 (GRCm39)	R1345H	probably damaging	Het
Nbeal2	A	G	9: 110,457,058 (GRCm39)		probably null	Het
Neo1	T	C	9: 58,796,312 (GRCm39)	D1205G	probably damaging	Het
Nhlrc2	A	G	19: 56,559,291 (GRCm39)	S259G	probably benign	Het
Nkain4	G	A	2: 180,577,796 (GRCm39)	P186L	probably damaging	Het
Nkain4	G	A	2: 180,577,797 (GRCm39)	P186S	probably damaging	Het
Nlrp1b	T	A	11: 71,109,283 (GRCm39)	R73*	probably null	Het
Nr5a2	T	C	1: 136,818,536 (GRCm39)	D330G	probably damaging	Het
Nup54	A	G	5: 92,572,153 (GRCm39)	L299P	probably damaging	Het
Or2v1	T	C	11: 49,025,877 (GRCm39)	L286P	probably damaging	Het
Or5aq7	A	G	2: 86,938,296 (GRCm39)	V145A	probably damaging	Het
Pcdhb8	T	A	18: 37,489,279 (GRCm39)	V319E	probably benign	Het
Pcsk6	T	A	7: 65,578,875 (GRCm39)	D129E	probably benign	Het
Pld5	G	A	1: 175,798,100 (GRCm39)	T433I	probably benign	Het
Plin1	A	T	7: 79,371,347 (GRCm39)	L459H	probably benign	Het
Psd4	T	C	2: 24,284,499 (GRCm39)	V121A	probably damaging	Het
Pxdn	A	T	12: 30,032,716 (GRCm39)	I167F	possibly damaging	Het
R3hdm2	T	C	10: 127,320,384 (GRCm39)	S569P	probably damaging	Het
Rfng	T	A	11: 120,673,516 (GRCm39)	T202S	probably damaging	Het
Robo1	T	C	16: 72,730,696 (GRCm39)	S266P	probably benign	Het
Sema3c	G	T	5: 17,858,804 (GRCm39)	V68L	probably damaging	Het
Slco6c1	C	T	1: 96,993,808 (GRCm39)	R645H	possibly damaging	Het
Slfn8	A	G	11: 82,907,626 (GRCm39)	Y306H	possibly damaging	Het
Snap91	T	C	9: 86,720,105 (GRCm39)	D144G	probably damaging	Het
St7l	T	G	3: 104,775,349 (GRCm39)	F75C	probably damaging	Het
Tekt3	C	T	11: 62,968,999 (GRCm39)	A242V	probably damaging	Het
Tex44	A	G	1: 86,354,306 (GRCm39)		probably benign	Het
Thg1l	T	C	11: 45,844,988 (GRCm39)	Q88R	probably benign	Het
Trav8n-2	T	A	14: 53,583,744 (GRCm39)	I67N	probably damaging	Het
Ttn	G	A	2: 76,677,770 (GRCm39)		probably benign	Het
Ube4a	A	T	9: 44,861,051 (GRCm39)	L253*	probably null	Het
Uggt1	A	T	1: 36,201,289 (GRCm39)	N1150K	probably damaging	Het
Ush2a	T	A	1: 187,995,298 (GRCm39)	L23*	probably null	Het
Usp22	T	A	11: 61,065,602 (GRCm39)	N37I	probably benign	Het
Usp53	T	A	3: 122,743,390 (GRCm39)	K515N	probably damaging	Het
Vmn2r4	T	C	3: 64,322,702 (GRCm39)	K6E	probably benign	Het
Vps13d	C	T	4: 144,875,918 (GRCm39)	V1530M	probably damaging	Het
Vwa3b	A	G	1: 37,153,612 (GRCm39)	I485V	possibly damaging	Het
Wnk4	T	C	11: 101,155,156 (GRCm39)	Y356H	probably damaging	Het
Zcchc2	A	G	1: 105,917,900 (GRCm39)		probably benign	Het
Zfp345	A	C	2: 150,315,010 (GRCm39)	Y176D	probably benign	Het
Zfp598	T	C	17: 24,896,850 (GRCm39)	F238S	possibly damaging	Het
Zkscan17	T	C	11: 59,393,820 (GRCm39)	D10G	probably damaging	Het
Zmat4	T	G	8: 24,392,083 (GRCm39)	M13R	probably damaging	Het

Other mutations in Stard10

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00272:Stard10	APN	7	100,971,173 (GRCm39)	missense	probably damaging	0.98
IGL01434:Stard10	APN	7	100,971,187 (GRCm39)	missense	probably benign	0.43
IGL02815:Stard10	APN	7	100,993,205 (GRCm39)	missense	probably benign	0.12
IGL03383:Stard10	APN	7	100,991,777 (GRCm39)	missense	probably damaging	0.96
Ill_starred	UTSW	7	100,992,343 (GRCm39)	splice site	probably null
BB002:Stard10	UTSW	7	100,991,838 (GRCm39)	missense	probably damaging	1.00
BB012:Stard10	UTSW	7	100,991,838 (GRCm39)	missense	probably damaging	1.00
R1544:Stard10	UTSW	7	100,993,233 (GRCm39)	missense	probably damaging	1.00
R3891:Stard10	UTSW	7	100,993,137 (GRCm39)	missense	possibly damaging	0.49
R4612:Stard10	UTSW	7	100,994,877 (GRCm39)	missense	possibly damaging	0.70
R5715:Stard10	UTSW	7	100,971,110 (GRCm39)	missense	probably damaging	1.00
R7156:Stard10	UTSW	7	100,995,258 (GRCm39)	missense	probably damaging	1.00
R7159:Stard10	UTSW	7	100,992,343 (GRCm39)	splice site	probably null
R7174:Stard10	UTSW	7	100,995,226 (GRCm39)	missense	probably damaging	0.96
R7719:Stard10	UTSW	7	100,995,320 (GRCm39)	missense	not run
R7925:Stard10	UTSW	7	100,991,838 (GRCm39)	missense	probably damaging	1.00
R8076:Stard10	UTSW	7	100,993,176 (GRCm39)	missense	probably damaging	1.00
R8939:Stard10	UTSW	7	100,991,847 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TCCTGGTTTCACAGTGTGTC -3'
(R):5'- TTTCCCTGAGCTACTGGACAG -3'

Sequencing Primer
(F):5'- AGGGCTGGCAGTTGATAGGATC -3'
(R):5'- TACTGGACAGGCCCCGAAG -3'

Posted On

2018-02-27