Mutagenetix > Incidental Mutations

Incidental Mutation 'R6220:Pknox1'

503977

Institutional Source

Beutler Lab

Gene Symbol

Pknox1

Ensembl Gene

ENSMUSG00000006705

Gene Name

Pbx/knotted 1 homeobox

Synonyms

D17Wsu76e, PREP1

MMRRC Submission

044352-MU

Accession Numbers

Genbank: NM_016670; MGI: 1201409

Is this an essential gene?

Essential (E-score: 1.000) question?

Stock #

R6220 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

31564749-31607684 bp(+) (GRCm38)

Type of Mutation

nonsense

DNA Base Change (assembly)

A to T at 31603203 bp

Zygosity

Heterozygous

Amino Acid Change

Arginine to Stop codon at position 315 (R315*)

Ref Sequence

ENSEMBL: ENSMUSP00000135804 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000097352] [ENSMUST00000175806] [ENSMUST00000176701]

Predicted Effect

probably null
Transcript: ENSMUST00000097352
AA Change: R315*

SMART Domains

Protein: ENSMUSP00000094966
Gene: ENSMUSG00000006705
AA Change: R315*

Domain	Start	End	E-Value	Type
Pfam:Meis_PKNOX_N	80	165	1.7e-39	PFAM
low complexity region	208	227	N/A	INTRINSIC
low complexity region	236	252	N/A	INTRINSIC
HOX	259	324	9.8e-12	SMART
low complexity region	404	415	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000175806
AA Change: R315*

SMART Domains

Protein: ENSMUSP00000134852
Gene: ENSMUSG00000006705
AA Change: R315*

Domain	Start	End	E-Value	Type
low complexity region	208	227	N/A	INTRINSIC
low complexity region	236	252	N/A	INTRINSIC
HOX	259	324	9.8e-12	SMART
low complexity region	404	415	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000175812

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000176513

Predicted Effect

probably null
Transcript: ENSMUST00000176701
AA Change: R315*

SMART Domains

Protein: ENSMUSP00000135804
Gene: ENSMUSG00000006705
AA Change: R315*

Domain	Start	End	E-Value	Type
low complexity region	208	227	N/A	INTRINSIC
low complexity region	236	252	N/A	INTRINSIC
HOX	259	324	9.8e-12	SMART
low complexity region	404	415	N/A	INTRINSIC

Meta Mutation Damage Score

0.9755

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.5%
20x: 98.3%

Validation Efficiency

100% (65/65)

MGI Phenotype

PHENOTYPE: Homozygous mutation of this gene results in embryonic lethality during fetal growth and development with variable penetrance, decreased body weight, and impaired T cell development. [provided by MGI curators]

Allele List at MGI

All alleles(80) : Targeted, knock-out(1) Gene trapped(79)

Other mutations in this stock

Total: 63 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
9130011E15Rik	T	C	19: 45,846,115	E618G	possibly damaging	Het
Abhd16b	A	G	2: 181,493,785	D160G	probably damaging	Het
Acap1	A	G	11: 69,889,679	F15S	probably damaging	Het
Adam30	A	T	3: 98,161,309	S153C	probably damaging	Het
Afp	A	T	5: 90,504,410	D420V	possibly damaging	Het
Ak9	T	A	10: 41,370,099	H729Q	unknown	Het
Arsi	G	A	18: 60,916,651	G202E	probably benign	Het
Bcr	A	G	10: 75,062,292	T423A	probably benign	Het
Cc2d1b	C	T	4: 108,633,225	R825W	probably damaging	Het
Ctns	T	C	11: 73,193,128	T23A	probably benign	Het
Ddx54	T	A	5: 120,620,689	N332K	probably benign	Het
Dysf	T	A	6: 84,149,745	I1344N	probably damaging	Het
Elovl3	A	T	19: 46,134,500	M172L	probably benign	Het
Fbxo6	A	T	4: 148,149,522	I39N	probably damaging	Het
Filip1l	T	A	16: 57,569,989	N313K	probably benign	Het
Foxp2	C	A	6: 15,437,948	T716K	probably damaging	Het
Gm10549	C	A	18: 33,464,305		probably benign	Het
Gm10645	A	G	8: 83,165,757		probably benign	Het
Gm10735	T	C	13: 113,041,496		probably benign	Het
Gm4847	A	T	1: 166,634,972	D316E	probably damaging	Het
Gorasp2	T	C	2: 70,690,790	L388P	probably damaging	Het
Heatr5b	A	G	17: 78,773,677	L1382P	probably damaging	Het
Herc1	A	G	9: 66,433,788	Y1729C	probably damaging	Het
Ifi207	A	T	1: 173,729,546	L542H	probably damaging	Het
Ighv3-5	T	A	12: 114,262,718	N96I	probably damaging	Het
Isl1	T	C	13: 116,303,267	T182A	probably benign	Het
Jph4	T	C	14: 55,110,085	E421G	probably benign	Het
Lrrc45	T	C	11: 120,719,527	I488T	probably benign	Het
Mroh8	A	G	2: 157,233,163	I471T	probably benign	Het
Ms4a2	A	T	19: 11,617,563	D96E	probably damaging	Het
Mst1r	T	A	9: 107,907,348	N68K	probably benign	Het
Myo18b	A	G	5: 112,757,507	M2075T	possibly damaging	Het
Neb	T	C	2: 52,270,972	K2229R	probably null	Het
Nkx6-3	T	A	8: 23,153,971		probably null	Het
Nlrp1a	C	A	11: 71,142,338	S10I	probably benign	Het
Npas2	A	T	1: 39,336,061	T487S	probably benign	Het
Nrxn1	G	C	17: 91,088,476	T84R	probably benign	Het
Olfr730	C	A	14: 50,186,678	D180Y	probably damaging	Het
Otx1	C	A	11: 21,997,037	A91S	probably damaging	Het
Pcdh18	A	G	3: 49,745,251	C921R	probably damaging	Het
Pcdha9	A	G	18: 36,998,478	Y200C	probably damaging	Het
Rasgrp1	C	T	2: 117,284,929	W726*	probably null	Het
Rassf8	G	A	6: 145,817,133	R402H	probably damaging	Het
Rev3l	T	A	10: 39,822,779	Y1091N	probably damaging	Het
Riok3	T	G	18: 12,149,551	V349G	probably damaging	Het
Rps18	A	T	17: 33,955,136	V15E	probably damaging	Het
Rptor	A	T	11: 119,897,442	Y1323F	possibly damaging	Het
Rspry1	T	C	8: 94,658,750	C437R	probably damaging	Het
Sema5a	T	A	15: 32,686,729	Y996N	probably damaging	Het
Smarcad1	A	G	6: 65,114,329	I1011M	probably benign	Het
Supv3l1	A	T	10: 62,439,021	M295K	possibly damaging	Het
Sv2c	T	C	13: 95,976,626	D605G	probably damaging	Het
Teddm1b	G	A	1: 153,875,201	W252*	probably null	Het
Tes	T	A	6: 17,086,196	C29*	probably null	Het
Thsd4	A	G	9: 59,982,747	W856R	probably damaging	Het
Treml4	A	T	17: 48,264,848	D93V	possibly damaging	Het
Trim66	T	C	7: 109,483,093	T218A	probably damaging	Het
Tssk5	T	C	15: 76,373,773	D128G	probably damaging	Het
Ubr3	T	A	2: 70,020,475	W1746R	probably damaging	Het
Vmn2r11	T	C	5: 109,053,568	I357V	probably benign	Het
Vmn2r87	A	T	10: 130,479,938	D86E	probably benign	Het
Zfp184	T	G	13: 21,960,207	H694Q	probably damaging	Het
Zranb3	A	C	1: 127,999,404	F341L	probably benign	Het

Other mutations in Pknox1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00331:Pknox1	APN	17	31599645	critical splice donor site	probably null
IGL01830:Pknox1	APN	17	31595310	missense	probably benign	0.21
IGL02070:Pknox1	APN	17	31603365	splice site	probably benign
IGL02309:Pknox1	APN	17	31590709	missense	probably benign	0.34
IGL02707:Pknox1	APN	17	31602819	missense	possibly damaging	0.84
3-1:Pknox1	UTSW	17	31588462	missense	probably benign	0.02
R0001:Pknox1	UTSW	17	31599636	missense	probably damaging	0.98
R0147:Pknox1	UTSW	17	31604790	missense	probably benign	0.01
R0148:Pknox1	UTSW	17	31604790	missense	probably benign	0.01
R0388:Pknox1	UTSW	17	31603192	missense	probably damaging	1.00
R0443:Pknox1	UTSW	17	31592219	missense	probably damaging	1.00
R0920:Pknox1	UTSW	17	31596891	missense	probably damaging	0.99
R1428:Pknox1	UTSW	17	31592092	splice site	probably benign
R1563:Pknox1	UTSW	17	31595282	missense	probably damaging	1.00
R4199:Pknox1	UTSW	17	31602816	missense	probably damaging	0.96
R4200:Pknox1	UTSW	17	31599610	missense	probably benign	0.04
R4665:Pknox1	UTSW	17	31595326	critical splice donor site	probably null
R4700:Pknox1	UTSW	17	31603312	missense	probably damaging	1.00
R4764:Pknox1	UTSW	17	31590713	missense	possibly damaging	0.92
R5127:Pknox1	UTSW	17	31590739	missense	probably benign	0.00
R6712:Pknox1	UTSW	17	31595316	missense	probably benign	0.23
R6865:Pknox1	UTSW	17	31588560	missense	probably damaging	0.98
R7186:Pknox1	UTSW	17	31603198	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CATGTGCCACCTTACTCAACTAAATTC -3'
(R):5'- AGTTGACAGCAGCTGACCTG -3'

Sequencing Primer
(F):5'- AAAGATCTGGCCCTGCTT -3'
(R):5'- CCTTGGACCACCTGAAGTG -3'

Posted On

2018-02-27