Incidental Mutation 'R6224:Lilrb4a'
ID 504199
Institutional Source Beutler Lab
Gene Symbol Lilrb4a
Ensembl Gene ENSMUSG00000112148
Gene Name leukocyte immunoglobulin-like receptor, subfamily B, member 4A
Synonyms Gp49b, CD85K, ILT3, Lilrb4, HM18
MMRRC Submission 044355-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.114) question?
Stock # R6224 (G1)
Quality Score 225.009
Status Validated
Chromosome 10
Chromosomal Location 51367052-51372707 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to A at 51367745 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Tyrosine to Asparagine at position 96 (Y96N)
Ref Sequence ENSEMBL: ENSMUSP00000151694 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000078778] [ENSMUST00000102894] [ENSMUST00000217705] [ENSMUST00000217706] [ENSMUST00000218123] [ENSMUST00000219696] [ENSMUST00000219960] [ENSMUST00000218617] [ENSMUST00000220182] [ENSMUST00000220226]
AlphaFold no structure available at present
Predicted Effect probably damaging
Transcript: ENSMUST00000078778
AA Change: Y96N

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000077833
Gene: ENSMUSG00000112148
AA Change: Y96N

DomainStartEndE-ValueType
signal peptide 1 23 N/A INTRINSIC
IG_like 28 118 4.91e1 SMART
IG_like 129 219 1.84e1 SMART
transmembrane domain 239 261 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000102894
SMART Domains Protein: ENSMUSP00000099958
Gene: ENSMUSG00000112023

DomainStartEndE-ValueType
signal peptide 1 23 N/A INTRINSIC
SCOP:d1nkr_2 24 118 3e-14 SMART
Blast:IG_like 28 118 5e-49 BLAST
Pfam:Ig_3 123 200 6.5e-8 PFAM
Pfam:Ig_2 123 218 5.9e-8 PFAM
Pfam:ig 127 211 8.4e-9 PFAM
transmembrane domain 239 261 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000217705
Predicted Effect probably damaging
Transcript: ENSMUST00000217706
AA Change: Y96N

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
Predicted Effect probably damaging
Transcript: ENSMUST00000218123
AA Change: Y96N

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
Predicted Effect noncoding transcript
Transcript: ENSMUST00000218217
Predicted Effect probably damaging
Transcript: ENSMUST00000219696
AA Change: Y96N

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
Predicted Effect noncoding transcript
Transcript: ENSMUST00000218340
Predicted Effect noncoding transcript
Transcript: ENSMUST00000219388
Predicted Effect noncoding transcript
Transcript: ENSMUST00000218753
Predicted Effect probably benign
Transcript: ENSMUST00000219960
Predicted Effect probably benign
Transcript: ENSMUST00000218617
Predicted Effect noncoding transcript
Transcript: ENSMUST00000220166
Predicted Effect noncoding transcript
Transcript: ENSMUST00000219848
Predicted Effect noncoding transcript
Transcript: ENSMUST00000219828
Predicted Effect noncoding transcript
Transcript: ENSMUST00000219029
Predicted Effect noncoding transcript
Transcript: ENSMUST00000218413
Predicted Effect noncoding transcript
Transcript: ENSMUST00000219175
Predicted Effect probably damaging
Transcript: ENSMUST00000220182
AA Change: Y96N

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
Predicted Effect probably benign
Transcript: ENSMUST00000220226
Predicted Effect noncoding transcript
Transcript: ENSMUST00000220402
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.6%
  • 10x: 98.2%
  • 20x: 94.8%
Validation Efficiency 100% (55/55)
MGI Phenotype PHENOTYPE: Homozygotes for a targeted null mutation exhibit increased sensitivity to IgE-dependent passive cutaneous anaphylaxis and a reduced threshold for antigen challenge in active cutaneous anaphylaxis. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 55 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
2300003K06Rik A C 11: 99,728,840 (GRCm39) M1R probably null Het
4930505A04Rik A C 11: 30,404,815 (GRCm39) N29K probably benign Het
Adamtsl4 T C 3: 95,589,039 (GRCm39) Y464C probably damaging Het
Asgr2 T C 11: 69,989,072 (GRCm39) V172A probably damaging Het
Atad1 T C 19: 32,676,028 (GRCm39) Y132C probably damaging Het
Bpifa6 G A 2: 153,829,073 (GRCm39) R200H probably damaging Het
Brd1 A T 15: 88,572,558 (GRCm39) M1171K possibly damaging Het
Cadm2 A T 16: 66,461,281 (GRCm39) L392Q probably damaging Het
Ccdc183 C T 2: 25,500,594 (GRCm39) E333K possibly damaging Het
Cenpe T C 3: 134,949,536 (GRCm39) I1335T possibly damaging Het
Cpxm2 T C 7: 131,745,460 (GRCm39) N122D probably benign Het
Crls1 T A 2: 132,691,770 (GRCm39) probably null Het
Cyp46a1 T C 12: 108,327,819 (GRCm39) F460S probably damaging Het
Dab1 C T 4: 104,588,948 (GRCm39) A524V probably benign Het
Dcps T A 9: 35,047,777 (GRCm39) T128S probably benign Het
Dcun1d3 A T 7: 119,458,714 (GRCm39) L107* probably null Het
Eml1 T C 12: 108,480,767 (GRCm39) F397S probably damaging Het
Fanca T A 8: 124,032,020 (GRCm39) H348L possibly damaging Het
Foxo1 T A 3: 52,253,093 (GRCm39) S419T probably benign Het
Gli3 T C 13: 15,899,730 (GRCm39) V1039A probably benign Het
Gng14 A T 8: 85,794,220 (GRCm39) *73R probably null Het
Gp6 A T 7: 4,397,211 (GRCm39) F75I probably benign Het
Gpha2 T A 19: 6,277,142 (GRCm39) I81N possibly damaging Het
Gspt1 C A 16: 11,042,406 (GRCm39) V493L probably benign Het
Igsf10 C A 3: 59,232,931 (GRCm39) C1934F probably damaging Het
Irgm1 T C 11: 48,757,713 (GRCm39) T49A probably benign Het
Klc4 A G 17: 46,950,988 (GRCm39) I207T possibly damaging Het
Krt1 A T 15: 101,758,702 (GRCm39) V154D possibly damaging Het
Lama1 T C 17: 68,109,982 (GRCm39) V2201A possibly damaging Het
Lrfn2 A G 17: 49,403,379 (GRCm39) T501A probably damaging Het
Lrriq1 A G 10: 103,051,618 (GRCm39) I378T probably damaging Het
Mphosph8 T C 14: 56,905,810 (GRCm39) M1T probably null Het
Nsd1 T C 13: 55,460,945 (GRCm39) S2391P possibly damaging Het
Ogdhl G A 14: 32,064,018 (GRCm39) G647D probably benign Het
Or5p57 T C 7: 107,665,949 (GRCm39) I19V probably benign Het
Or6c76b A G 10: 129,693,061 (GRCm39) K225E probably benign Het
Pbrm1 T A 14: 30,772,068 (GRCm39) H387Q probably benign Het
Pdgfrb C A 18: 61,215,011 (GRCm39) Y1013* probably null Het
Pitrm1 T C 13: 6,615,090 (GRCm39) V562A probably damaging Het
Pnpla8 T C 12: 44,329,811 (GRCm39) V121A possibly damaging Het
Psd4 T C 2: 24,291,569 (GRCm39) L639P probably damaging Het
Psmc3 G T 2: 90,884,975 (GRCm39) R47L probably damaging Het
Rptn C G 3: 93,305,437 (GRCm39) H923Q possibly damaging Het
Sesn2 A G 4: 132,229,881 (GRCm39) V50A probably benign Het
Skic3 C T 13: 76,266,410 (GRCm39) T219M probably benign Het
Slc6a16 G A 7: 44,910,572 (GRCm39) G377S probably damaging Het
Slitrk1 A G 14: 109,149,454 (GRCm39) F419S probably damaging Het
Slitrk5 GACTAC GACTACTAC 14: 111,917,248 (GRCm39) probably benign Het
Spata31d1a T A 13: 59,854,134 (GRCm39) probably benign Homo
Tgoln1 A T 6: 72,592,984 (GRCm39) D165E possibly damaging Het
Tmprss15 T A 16: 78,821,266 (GRCm39) T492S probably benign Het
Zc3h13 T A 14: 75,574,849 (GRCm39) M1565K probably damaging Het
Zcwpw1 T C 5: 137,810,298 (GRCm39) V358A possibly damaging Het
Zfp607a A G 7: 27,578,007 (GRCm39) H359R probably damaging Het
Zzef1 T A 11: 72,746,209 (GRCm39) V837E probably damaging Het
Other mutations in Lilrb4a
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01399:Lilrb4a APN 10 51,370,161 (GRCm39) missense probably benign 0.42
IGL02057:Lilrb4a APN 10 51,368,103 (GRCm39) missense possibly damaging 0.81
IGL02386:Lilrb4a APN 10 51,367,322 (GRCm39) nonsense probably null
IGL02999:Lilrb4a APN 10 51,370,239 (GRCm39) missense probably damaging 1.00
IGL03292:Lilrb4a APN 10 51,370,942 (GRCm39) splice site probably null
IGL03382:Lilrb4a APN 10 51,367,616 (GRCm39) missense probably benign 0.10
R0276:Lilrb4a UTSW 10 51,367,677 (GRCm39) missense probably benign 0.01
R0470:Lilrb4a UTSW 10 51,370,923 (GRCm39) missense possibly damaging 0.87
R1313:Lilrb4a UTSW 10 51,356,832 (GRCm39) missense probably benign 0.25
R1459:Lilrb4a UTSW 10 51,367,683 (GRCm39) missense probably benign 0.44
R1675:Lilrb4a UTSW 10 51,372,281 (GRCm39) missense probably benign 0.37
R1819:Lilrb4a UTSW 10 51,372,124 (GRCm39) missense probably damaging 1.00
R1914:Lilrb4a UTSW 10 51,368,045 (GRCm39) missense probably benign 0.04
R2265:Lilrb4a UTSW 10 51,367,633 (GRCm39) nonsense probably null
R2338:Lilrb4a UTSW 10 51,367,796 (GRCm39) missense probably benign 0.13
R2884:Lilrb4a UTSW 10 51,367,709 (GRCm39) missense probably benign 0.01
R2886:Lilrb4a UTSW 10 51,367,709 (GRCm39) missense probably benign 0.01
R4322:Lilrb4a UTSW 10 51,367,707 (GRCm39) missense probably damaging 1.00
R4624:Lilrb4a UTSW 10 51,367,584 (GRCm39) missense probably damaging 1.00
R4923:Lilrb4a UTSW 10 51,368,139 (GRCm39) missense possibly damaging 0.67
R5001:Lilrb4a UTSW 10 51,367,516 (GRCm39) splice site probably null
R5262:Lilrb4a UTSW 10 51,369,303 (GRCm39) critical splice donor site probably null
R7447:Lilrb4a UTSW 10 51,367,149 (GRCm39) critical splice donor site probably null
R7763:Lilrb4a UTSW 10 51,367,142 (GRCm39) missense probably benign 0.00
Predicted Primers PCR Primer
(F):5'- TCGCTGCGTATACATCTGTG -3'
(R):5'- AGGCTGGGATTTTCATATGCTC -3'

Sequencing Primer
(F):5'- GCTGCGTATACATCTGTGATTAC -3'
(R):5'- TCATATGCTCCTAGAATACAAGGGAC -3'
Posted On 2018-02-28