Incidental Mutation 'R6234:Cnga4'
ID 504819
Institutional Source Beutler Lab
Gene Symbol Cnga4
Ensembl Gene ENSMUSG00000030897
Gene Name cyclic nucleotide gated channel alpha 4
Synonyms
MMRRC Submission 044399-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.067) question?
Stock # R6234 (G1)
Quality Score 225.009
Status Validated
Chromosome 7
Chromosomal Location 105053775-105057949 bp(+) (GRCm39)
Type of Mutation nonsense
DNA Base Change (assembly) T to G at 105056906 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Tyrosine to Stop codon at position 336 (Y336*)
Ref Sequence ENSEMBL: ENSMUSP00000147387 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000033187] [ENSMUST00000210344]
AlphaFold Q3UW12
Predicted Effect probably null
Transcript: ENSMUST00000033187
AA Change: Y439*
SMART Domains Protein: ENSMUSP00000033187
Gene: ENSMUSG00000030897
AA Change: Y439*

DomainStartEndE-ValueType
Pfam:Ion_trans 34 276 1.1e-28 PFAM
cNMP 348 472 1.54e-25 SMART
low complexity region 500 508 N/A INTRINSIC
low complexity region 514 523 N/A INTRINSIC
low complexity region 540 557 N/A INTRINSIC
Predicted Effect probably null
Transcript: ENSMUST00000210344
AA Change: Y336*
Meta Mutation Damage Score 0.9755 question?
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.6%
  • 10x: 98.1%
  • 20x: 94.6%
Validation Efficiency 100% (51/51)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] CNGA4 is a modulatory subunit of vertebrate cyclic nucleotide-gated membrane channels that transduce odorant signals (Munger et al., 2001 [PubMed 11739959]).[supplied by OMIM, Mar 2008]
PHENOTYPE: Inactivation of this gene results in odor adaptation defects. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 50 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adam34l T G 8: 44,078,949 (GRCm39) N425T probably benign Het
Adgb A C 10: 10,228,824 (GRCm39) probably null Het
Aldoart1 A G 4: 72,770,409 (GRCm39) I78T probably damaging Het
Bcl2l2 A G 14: 55,122,245 (GRCm39) D136G probably benign Het
Bltp1 A G 3: 37,037,620 (GRCm39) T2475A probably benign Het
Cd34 A T 1: 194,630,308 (GRCm39) I81F probably damaging Het
Chmp1b T A 18: 67,339,169 (GRCm39) *200R probably null Het
Clic6 T C 16: 92,296,110 (GRCm39) S257P probably benign Het
Dnase1l1 C T X: 73,320,644 (GRCm39) probably null Homo
Eef1akmt2 T C 7: 132,429,585 (GRCm39) T215A probably damaging Het
Fbrsl1 G A 5: 110,525,917 (GRCm39) T95I probably damaging Het
Fer1l6 T C 15: 58,432,488 (GRCm39) I345T probably damaging Het
Fmn1 T C 2: 113,196,000 (GRCm39) F567L unknown Het
Ftdc1 T A 16: 58,435,034 (GRCm39) D97V probably benign Het
Gabrg1 A T 5: 70,999,484 (GRCm39) L22I probably benign Het
Gfm1 A G 3: 67,342,847 (GRCm39) D127G probably damaging Het
Gm5114 T A 7: 39,058,768 (GRCm39) T284S probably benign Het
Gm9925 A T 18: 74,198,308 (GRCm39) probably benign Het
Hc T C 2: 34,918,058 (GRCm39) I742V probably benign Het
Heatr5a A T 12: 51,924,237 (GRCm39) M1992K possibly damaging Het
Homer3 T C 8: 70,743,815 (GRCm39) probably null Het
Hsf5 C G 11: 87,508,120 (GRCm39) T8S probably benign Het
Hspa4 C T 11: 53,153,766 (GRCm39) E702K probably benign Het
Il21r A G 7: 125,231,757 (GRCm39) D395G probably damaging Het
Kctd14 T A 7: 97,107,219 (GRCm39) V190E probably damaging Het
Mamdc4 C G 2: 25,460,092 (GRCm39) G57A probably damaging Het
Mroh2a T C 1: 88,162,334 (GRCm39) probably null Het
Mroh2a T C 1: 88,184,476 (GRCm39) V1453A probably benign Het
Mtch1 A T 17: 29,559,485 (GRCm39) probably null Het
Nasp G A 4: 116,479,979 (GRCm39) A31V possibly damaging Het
Neil3 G T 8: 54,061,774 (GRCm39) D202E probably damaging Het
Nfkb1 C T 3: 135,332,471 (GRCm39) V95I possibly damaging Het
Ptpra T A 2: 130,379,508 (GRCm39) M327K probably damaging Het
Ptprg C A 14: 12,213,747 (GRCm38) F263L probably damaging Het
Sap30 A G 8: 57,938,152 (GRCm39) V155A probably damaging Het
Serpinb2 G A 1: 107,452,501 (GRCm39) V360M probably damaging Het
Stradb A G 1: 59,027,707 (GRCm39) H79R probably damaging Het
Svep1 A T 4: 58,113,458 (GRCm39) probably null Het
Tcaf2 A T 6: 42,607,308 (GRCm39) H215Q probably benign Het
Tdrd5 A T 1: 156,120,947 (GRCm39) S227T possibly damaging Het
Timmdc1 A T 16: 38,338,861 (GRCm39) Y76* probably null Het
Tmbim4 T A 10: 120,057,628 (GRCm39) probably null Het
Tpr A G 1: 150,293,790 (GRCm39) K854R probably benign Het
Trav6-5 A G 14: 53,728,832 (GRCm39) T30A probably benign Het
Trrap T A 5: 144,776,523 (GRCm39) probably null Het
Ube2o A T 11: 116,430,316 (GRCm39) S1141T probably benign Het
Usp54 T A 14: 20,633,518 (GRCm39) K339I probably damaging Het
Vwf T G 6: 125,634,128 (GRCm39) V202G unknown Het
Wdr7 T C 18: 63,857,203 (GRCm39) L93P probably damaging Het
Zfp871 CCACAC CC 17: 32,994,494 (GRCm39) probably null Het
Other mutations in Cnga4
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01413:Cnga4 APN 7 105,054,169 (GRCm39) missense probably benign
IGL01418:Cnga4 APN 7 105,054,169 (GRCm39) missense probably benign
IGL02450:Cnga4 APN 7 105,054,955 (GRCm39) missense probably damaging 1.00
IGL02533:Cnga4 APN 7 105,057,168 (GRCm39) missense probably damaging 0.97
BB001:Cnga4 UTSW 7 105,057,028 (GRCm39) missense probably benign 0.00
BB011:Cnga4 UTSW 7 105,057,028 (GRCm39) missense probably benign 0.00
IGL03052:Cnga4 UTSW 7 105,053,932 (GRCm39) missense probably benign 0.21
R0020:Cnga4 UTSW 7 105,054,884 (GRCm39) missense probably damaging 1.00
R0135:Cnga4 UTSW 7 105,056,055 (GRCm39) missense probably damaging 1.00
R0281:Cnga4 UTSW 7 105,056,875 (GRCm39) missense probably damaging 1.00
R0506:Cnga4 UTSW 7 105,056,947 (GRCm39) missense probably damaging 1.00
R0599:Cnga4 UTSW 7 105,055,025 (GRCm39) missense probably damaging 1.00
R0646:Cnga4 UTSW 7 105,054,182 (GRCm39) missense possibly damaging 0.47
R0980:Cnga4 UTSW 7 105,057,213 (GRCm39) missense probably damaging 1.00
R1727:Cnga4 UTSW 7 105,054,961 (GRCm39) missense probably damaging 1.00
R3415:Cnga4 UTSW 7 105,056,325 (GRCm39) missense probably damaging 1.00
R3768:Cnga4 UTSW 7 105,056,887 (GRCm39) missense probably damaging 1.00
R4559:Cnga4 UTSW 7 105,054,892 (GRCm39) missense probably damaging 1.00
R4852:Cnga4 UTSW 7 105,054,937 (GRCm39) missense probably benign 0.01
R5081:Cnga4 UTSW 7 105,056,232 (GRCm39) missense probably benign 0.20
R6232:Cnga4 UTSW 7 105,056,906 (GRCm39) nonsense probably null
R6235:Cnga4 UTSW 7 105,056,906 (GRCm39) nonsense probably null
R6824:Cnga4 UTSW 7 105,056,036 (GRCm39) missense probably benign
R6866:Cnga4 UTSW 7 105,056,952 (GRCm39) missense possibly damaging 0.95
R6997:Cnga4 UTSW 7 105,056,190 (GRCm39) missense probably damaging 1.00
R7019:Cnga4 UTSW 7 105,055,036 (GRCm39) missense probably benign 0.00
R7273:Cnga4 UTSW 7 105,056,172 (GRCm39) missense probably damaging 1.00
R7509:Cnga4 UTSW 7 105,056,097 (GRCm39) missense probably benign 0.32
R7522:Cnga4 UTSW 7 105,055,195 (GRCm39) missense probably damaging 0.99
R7545:Cnga4 UTSW 7 105,056,286 (GRCm39) missense probably damaging 1.00
R7873:Cnga4 UTSW 7 105,056,249 (GRCm39) missense probably damaging 0.99
R7924:Cnga4 UTSW 7 105,057,028 (GRCm39) missense probably benign 0.00
R7969:Cnga4 UTSW 7 105,055,253 (GRCm39) missense probably damaging 1.00
R8024:Cnga4 UTSW 7 105,056,042 (GRCm39) missense probably damaging 1.00
R8284:Cnga4 UTSW 7 105,057,239 (GRCm39) missense probably benign 0.17
R8743:Cnga4 UTSW 7 105,057,220 (GRCm39) missense probably benign
R9553:Cnga4 UTSW 7 105,054,977 (GRCm39) missense probably damaging 1.00
X0025:Cnga4 UTSW 7 105,054,427 (GRCm39) missense probably damaging 0.99
Predicted Primers PCR Primer
(F):5'- GGAAAAGTGGCTTGGCTCAG -3'
(R):5'- CAAACTTGGTCTGTAGGTCATCAAG -3'

Sequencing Primer
(F):5'- GAAGCACCAATGTGGAGGTTACATC -3'
(R):5'- AGGTCATCAAGCTGCTGGTC -3'
Posted On 2018-02-28