Incidental Mutation 'R6234:Neil3'
ID 504822
Institutional Source Beutler Lab
Gene Symbol Neil3
Ensembl Gene ENSMUSG00000039396
Gene Name nei like 3 (E. coli)
Synonyms
MMRRC Submission 044399-MU
Accession Numbers
Essential gene? Possibly non essential (E-score: 0.457) question?
Stock # R6234 (G1)
Quality Score 225.009
Status Validated
Chromosome 8
Chromosomal Location 54039902-54092100 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) G to T at 54061774 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Aspartic acid to Glutamic Acid at position 202 (D202E)
Ref Sequence ENSEMBL: ENSMUSP00000041909 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000047768] [ENSMUST00000135443]
AlphaFold Q8K203
PDB Structure Crystal structure of mouse Endonuclease VIII-LIKE 3 (mNEIL3) [X-RAY DIFFRACTION]
Predicted Effect probably damaging
Transcript: ENSMUST00000047768
AA Change: D202E

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000041909
Gene: ENSMUSG00000039396
AA Change: D202E

DomainStartEndE-ValueType
low complexity region 43 54 N/A INTRINSIC
Blast:Fapy_DNA_glyco 57 137 5e-34 BLAST
H2TH 152 235 6.13e-6 SMART
ZnF_RBZ 320 344 2.28e-5 SMART
Pfam:zf-GRF 506 551 1.2e-24 PFAM
Pfam:zf-GRF 553 597 5.8e-22 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000126157
SMART Domains Protein: ENSMUSP00000115066
Gene: ENSMUSG00000039396

DomainStartEndE-ValueType
Blast:Fapy_DNA_glyco 44 86 1e-12 BLAST
H2TH 101 184 6.13e-6 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000130656
Predicted Effect probably benign
Transcript: ENSMUST00000135443
Predicted Effect noncoding transcript
Transcript: ENSMUST00000149053
Predicted Effect noncoding transcript
Transcript: ENSMUST00000153267
SMART Domains Protein: ENSMUSP00000122287
Gene: ENSMUSG00000039396

DomainStartEndE-ValueType
Blast:Fapy_DNA_glyco 11 53 5e-13 BLAST
H2TH 68 151 6.13e-6 SMART
Meta Mutation Damage Score 0.2868 question?
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.6%
  • 10x: 98.1%
  • 20x: 94.6%
Validation Efficiency 100% (51/51)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] NEIL3 belongs to a class of DNA glycosylases homologous to the bacterial Fpg/Nei family. These glycosylases initiate the first step in base excision repair by cleaving bases damaged by reactive oxygen species and introducing a DNA strand break via the associated lyase reaction (Bandaru et al., 2002 [PubMed 12509226]).[supplied by OMIM, Mar 2008]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit decreased neurogenesis following hypoxia-ischemia. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 50 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adam34l T G 8: 44,078,949 (GRCm39) N425T probably benign Het
Adgb A C 10: 10,228,824 (GRCm39) probably null Het
Aldoart1 A G 4: 72,770,409 (GRCm39) I78T probably damaging Het
Bcl2l2 A G 14: 55,122,245 (GRCm39) D136G probably benign Het
Bltp1 A G 3: 37,037,620 (GRCm39) T2475A probably benign Het
Cd34 A T 1: 194,630,308 (GRCm39) I81F probably damaging Het
Chmp1b T A 18: 67,339,169 (GRCm39) *200R probably null Het
Clic6 T C 16: 92,296,110 (GRCm39) S257P probably benign Het
Cnga4 T G 7: 105,056,906 (GRCm39) Y336* probably null Het
Dnase1l1 C T X: 73,320,644 (GRCm39) probably null Homo
Eef1akmt2 T C 7: 132,429,585 (GRCm39) T215A probably damaging Het
Fbrsl1 G A 5: 110,525,917 (GRCm39) T95I probably damaging Het
Fer1l6 T C 15: 58,432,488 (GRCm39) I345T probably damaging Het
Fmn1 T C 2: 113,196,000 (GRCm39) F567L unknown Het
Ftdc1 T A 16: 58,435,034 (GRCm39) D97V probably benign Het
Gabrg1 A T 5: 70,999,484 (GRCm39) L22I probably benign Het
Gfm1 A G 3: 67,342,847 (GRCm39) D127G probably damaging Het
Gm5114 T A 7: 39,058,768 (GRCm39) T284S probably benign Het
Gm9925 A T 18: 74,198,308 (GRCm39) probably benign Het
Hc T C 2: 34,918,058 (GRCm39) I742V probably benign Het
Heatr5a A T 12: 51,924,237 (GRCm39) M1992K possibly damaging Het
Homer3 T C 8: 70,743,815 (GRCm39) probably null Het
Hsf5 C G 11: 87,508,120 (GRCm39) T8S probably benign Het
Hspa4 C T 11: 53,153,766 (GRCm39) E702K probably benign Het
Il21r A G 7: 125,231,757 (GRCm39) D395G probably damaging Het
Kctd14 T A 7: 97,107,219 (GRCm39) V190E probably damaging Het
Mamdc4 C G 2: 25,460,092 (GRCm39) G57A probably damaging Het
Mroh2a T C 1: 88,162,334 (GRCm39) probably null Het
Mroh2a T C 1: 88,184,476 (GRCm39) V1453A probably benign Het
Mtch1 A T 17: 29,559,485 (GRCm39) probably null Het
Nasp G A 4: 116,479,979 (GRCm39) A31V possibly damaging Het
Nfkb1 C T 3: 135,332,471 (GRCm39) V95I possibly damaging Het
Ptpra T A 2: 130,379,508 (GRCm39) M327K probably damaging Het
Ptprg C A 14: 12,213,747 (GRCm38) F263L probably damaging Het
Sap30 A G 8: 57,938,152 (GRCm39) V155A probably damaging Het
Serpinb2 G A 1: 107,452,501 (GRCm39) V360M probably damaging Het
Stradb A G 1: 59,027,707 (GRCm39) H79R probably damaging Het
Svep1 A T 4: 58,113,458 (GRCm39) probably null Het
Tcaf2 A T 6: 42,607,308 (GRCm39) H215Q probably benign Het
Tdrd5 A T 1: 156,120,947 (GRCm39) S227T possibly damaging Het
Timmdc1 A T 16: 38,338,861 (GRCm39) Y76* probably null Het
Tmbim4 T A 10: 120,057,628 (GRCm39) probably null Het
Tpr A G 1: 150,293,790 (GRCm39) K854R probably benign Het
Trav6-5 A G 14: 53,728,832 (GRCm39) T30A probably benign Het
Trrap T A 5: 144,776,523 (GRCm39) probably null Het
Ube2o A T 11: 116,430,316 (GRCm39) S1141T probably benign Het
Usp54 T A 14: 20,633,518 (GRCm39) K339I probably damaging Het
Vwf T G 6: 125,634,128 (GRCm39) V202G unknown Het
Wdr7 T C 18: 63,857,203 (GRCm39) L93P probably damaging Het
Zfp871 CCACAC CC 17: 32,994,494 (GRCm39) probably null Het
Other mutations in Neil3
AlleleSourceChrCoordTypePredicted EffectPPH Score
R0426:Neil3 UTSW 8 54,062,431 (GRCm39) unclassified probably benign
R0533:Neil3 UTSW 8 54,091,810 (GRCm39) splice site probably null
R0943:Neil3 UTSW 8 54,062,404 (GRCm39) unclassified probably benign
R1688:Neil3 UTSW 8 54,054,069 (GRCm39) missense probably damaging 1.00
R1875:Neil3 UTSW 8 54,052,454 (GRCm39) missense probably damaging 1.00
R2238:Neil3 UTSW 8 54,052,311 (GRCm39) missense possibly damaging 0.68
R3979:Neil3 UTSW 8 54,076,699 (GRCm39) missense probably damaging 1.00
R4909:Neil3 UTSW 8 54,091,928 (GRCm39) missense probably damaging 1.00
R5069:Neil3 UTSW 8 54,054,076 (GRCm39) missense possibly damaging 0.89
R5407:Neil3 UTSW 8 54,054,054 (GRCm39) missense probably benign 0.00
R6144:Neil3 UTSW 8 54,052,447 (GRCm39) missense probably benign 0.01
R6185:Neil3 UTSW 8 54,052,182 (GRCm39) missense probably benign 0.03
R6375:Neil3 UTSW 8 54,040,311 (GRCm39) missense possibly damaging 0.71
R6830:Neil3 UTSW 8 54,052,514 (GRCm39) missense probably benign 0.00
R7003:Neil3 UTSW 8 54,054,001 (GRCm39) missense possibly damaging 0.60
R8165:Neil3 UTSW 8 54,042,129 (GRCm39) missense probably benign 0.00
R8390:Neil3 UTSW 8 54,062,559 (GRCm39) missense probably damaging 1.00
R9166:Neil3 UTSW 8 54,058,722 (GRCm39) missense probably damaging 1.00
R9554:Neil3 UTSW 8 54,061,770 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- AGCACAAGTCTCCCCAGTTG -3'
(R):5'- CTATAGAAATTCGGTGGAAAGCC -3'

Sequencing Primer
(F):5'- AAGTCTCCCCAGTTGGAATG -3'
(R):5'- CCAACAGAGAGTCAGAGTGATG -3'
Posted On 2018-02-28