Incidental Mutation 'R6238:Lif'
ID 505064
Institutional Source Beutler Lab
Gene Symbol Lif
Ensembl Gene ENSMUSG00000034394
Gene Name leukemia inhibitory factor
Synonyms
MMRRC Submission 044401-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.231) question?
Stock # R6238 (G1)
Quality Score 225.009
Status Validated
Chromosome 11
Chromosomal Location 4207587-4222514 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 4218940 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Glutamic Acid to Glycine at position 73 (E73G)
Ref Sequence ENSEMBL: ENSMUSP00000067066 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000040750] [ENSMUST00000066283]
AlphaFold P09056
PDB Structure LEUKAEMIA INHIBITORY FACTOR CHIMERA (MH35-LIF), NMR, 20 STRUCTURES [SOLUTION NMR]
THE CRYSTAL STRUCTURE AND BIOLOGICAL FUNCTION OF LEUKEMIA INHIBITORY FACTOR: IMPLICATIONS FOR RECEPTOR BINDING [X-RAY DIFFRACTION]
Predicted Effect possibly damaging
Transcript: ENSMUST00000040750
AA Change: E28G

PolyPhen 2 Score 0.880 (Sensitivity: 0.82; Specificity: 0.94)
SMART Domains Protein: ENSMUSP00000036853
Gene: ENSMUSG00000034394
AA Change: E28G

DomainStartEndE-ValueType
LIF_OSM 1 147 1.76e-93 SMART
Predicted Effect possibly damaging
Transcript: ENSMUST00000066283
AA Change: E73G

PolyPhen 2 Score 0.880 (Sensitivity: 0.82; Specificity: 0.94)
SMART Domains Protein: ENSMUSP00000067066
Gene: ENSMUSG00000034394
AA Change: E73G

DomainStartEndE-ValueType
signal peptide 1 23 N/A INTRINSIC
LIF_OSM 35 192 1.54e-107 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000154927
Meta Mutation Damage Score 0.5795 question?
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.6%
  • 10x: 98.2%
  • 20x: 94.8%
Validation Efficiency 100% (62/62)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a pleiotropic cytokine with roles in several different systems. It is involved in the induction of hematopoietic differentiation in normal and myeloid leukemia cells, induction of neuronal cell differentiation, regulator of mesenchymal to epithelial conversion during kidney development, and may also have a role in immune tolerance at the maternal-fetal interface. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Mar 2012]
PHENOTYPE: Homozygotes for targeted null mutations have reduced numbers of stem cells in spleen and bone marrow, enhanced inflammatory responses, impaired sensory neuron regrowth, and uterine insufficiency. Heterozygotes show intermediate numbers of stem cells. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 62 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
2610028H24Rik A C 10: 76,285,096 (GRCm39) T2P possibly damaging Het
2610042L04Rik A G 14: 4,348,962 (GRCm38) N41S probably damaging Het
4933402N03Rik T C 7: 130,747,863 (GRCm39) D43G probably benign Het
Adcy10 C A 1: 165,403,297 (GRCm39) Y1598* probably null Het
Adgrv1 G A 13: 81,614,402 (GRCm39) T3997M probably benign Het
Amfr A C 8: 94,726,992 (GRCm39) F74V probably damaging Het
Ankrd13a T C 5: 114,924,787 (GRCm39) Y91H probably benign Het
Baiap3 A G 17: 25,464,732 (GRCm39) S767P probably benign Het
Car12 C T 9: 66,661,008 (GRCm39) T124I probably damaging Het
Casp9 G T 4: 141,534,448 (GRCm39) G286V probably damaging Het
Cc2d2a T A 5: 43,828,577 (GRCm39) D18E probably benign Het
Cdc27 T C 11: 104,419,270 (GRCm39) N221D probably damaging Het
Cebpz A G 17: 79,244,339 (GRCm39) S41P possibly damaging Het
Cenpo T A 12: 4,281,968 (GRCm39) S10C possibly damaging Het
Chid1 A G 7: 141,076,049 (GRCm39) V368A probably benign Het
Clca3a1 C A 3: 144,714,716 (GRCm39) V634L probably benign Het
Cmtr1 A G 17: 29,901,122 (GRCm39) D683G probably damaging Het
Cpsf3 G T 12: 21,350,163 (GRCm39) R294L probably damaging Het
Ddrgk1 G A 2: 130,496,599 (GRCm39) T255M possibly damaging Het
Dennd6a T A 14: 26,337,813 (GRCm39) probably null Het
Dnah10 A G 5: 124,820,743 (GRCm39) R526G probably damaging Het
Dock3 G A 9: 106,790,147 (GRCm39) T1484I probably benign Het
Efcab10 T C 12: 33,448,433 (GRCm39) Y89H probably damaging Het
Etl4 T A 2: 20,806,379 (GRCm39) D1200E probably damaging Het
Fbn1 T A 2: 125,166,865 (GRCm39) D2017V probably damaging Het
Ftmt G A 18: 52,465,307 (GRCm39) V208M probably damaging Het
Fzd10 T C 5: 128,679,995 (GRCm39) Y572H probably damaging Het
Gcc1 T C 6: 28,420,742 (GRCm39) K39E probably damaging Het
Hydin A G 8: 111,118,743 (GRCm39) probably null Het
Lrtm1 C A 14: 28,749,628 (GRCm39) Q357K probably benign Het
Mef2d T A 3: 88,066,852 (GRCm39) L205Q probably damaging Het
Naalad2 T A 9: 18,296,361 (GRCm39) E96D probably damaging Het
Nbas T C 12: 13,532,596 (GRCm39) I1768T probably benign Het
Nodal T C 10: 61,259,258 (GRCm39) S232P probably damaging Het
Or52ab7 A T 7: 102,978,115 (GRCm39) I141F possibly damaging Het
Or8b12c A G 9: 37,715,317 (GRCm39) T37A probably benign Het
Parl G A 16: 20,120,963 (GRCm39) R39C possibly damaging Het
Pcdha9 G A 18: 37,132,028 (GRCm39) V366I probably benign Het
Pdzd8 A G 19: 59,288,994 (GRCm39) V802A probably benign Het
Plcl2 T C 17: 50,913,873 (GRCm39) V294A probably damaging Het
Plxna2 T A 1: 194,472,504 (GRCm39) S1083T probably benign Het
Polr2a G T 11: 69,638,047 (GRCm39) L141I possibly damaging Het
Ptpre C A 7: 135,272,909 (GRCm39) R468S probably damaging Het
Raet1e T A 10: 22,056,770 (GRCm39) N115K probably benign Het
Rfx8 C A 1: 39,709,554 (GRCm39) S491I probably damaging Het
Rpe T A 1: 66,740,807 (GRCm39) L48* probably null Het
Skint5 A T 4: 113,800,064 (GRCm39) probably null Het
Spata24 C A 18: 35,793,389 (GRCm39) S111I possibly damaging Het
Suz12 G C 11: 79,893,006 (GRCm39) probably benign Het
Taf4 T A 2: 179,573,832 (GRCm39) I679F probably damaging Het
Tlr1 G T 5: 65,084,472 (GRCm39) P35Q possibly damaging Het
Tonsl T C 15: 76,520,418 (GRCm39) probably null Het
Tsen54 G A 11: 115,711,513 (GRCm39) R310H probably benign Het
Ttc7b A G 12: 100,461,681 (GRCm39) S99P probably benign Het
Ttn A T 2: 76,641,587 (GRCm39) L5176Q possibly damaging Het
Uhmk1 T A 1: 170,027,563 (GRCm39) N378I probably damaging Het
Vmn2r107 A G 17: 20,565,849 (GRCm39) T55A probably benign Het
Vmn2r74 C T 7: 85,601,280 (GRCm39) C786Y probably damaging Het
Wdr20rt C T 12: 65,272,964 (GRCm39) probably benign Het
Zfand2a T A 5: 139,467,746 (GRCm39) H42L probably damaging Het
Zfp990 T A 4: 145,264,483 (GRCm39) C494S probably damaging Het
Zkscan4 A T 13: 21,668,757 (GRCm39) R403W possibly damaging Het
Other mutations in Lif
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL03195:Lif APN 11 4,219,201 (GRCm39) missense probably damaging 1.00
R1137:Lif UTSW 11 4,219,237 (GRCm39) missense probably damaging 1.00
R2120:Lif UTSW 11 4,219,051 (GRCm39) missense possibly damaging 0.93
R6302:Lif UTSW 11 4,218,924 (GRCm39) missense probably damaging 1.00
R8946:Lif UTSW 11 4,219,225 (GRCm39) missense possibly damaging 0.63
R9355:Lif UTSW 11 4,219,044 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- ACCTTGGTGAGTGAGTTCAC -3'
(R):5'- CATTGAGCTTGACCTGGAGG -3'

Sequencing Primer
(F):5'- GTGAGTTCACATTTCTGATCATTGC -3'
(R):5'- AGCTTGACCTGGAGGCTCAC -3'
Posted On 2018-02-28