Incidental Mutation 'R6241:Dennd1c'
| ID |
505266 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Dennd1c
|
| Ensembl Gene |
ENSMUSG00000002668 |
| Gene Name |
DENN domain containing 1C |
| Synonyms |
4432409M07Rik |
| MMRRC Submission |
044402-MU
|
| Accession Numbers |
|
| Essential gene? |
Non essential
(E-score: 0.000)
|
| Stock # |
R6241 (G1)
|
| Quality Score |
211.009 |
|
Status
|
Validated
|
| Chromosome |
17 |
| Chromosomal Location |
57373051-57385518 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to C
at 57373272 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Asparagine to Aspartic acid
at position 734
(N734D)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000011623
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000011623]
[ENSMUST00000071826]
[ENSMUST00000097299]
[ENSMUST00000163628]
[ENSMUST00000163763]
[ENSMUST00000169543]
|
| AlphaFold |
Q8CFK6 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000011623
AA Change: N734D
PolyPhen 2
Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)
|
| SMART Domains |
Protein: ENSMUSP00000011623
Gene: ENSMUSG00000002668
AA Change: N734D
| Domain | Start | End | E-Value | Type |
|---|
|
uDENN
|
9 |
89 |
1.18e-22 |
SMART |
|
DENN
|
90 |
293 |
3.95e-74 |
SMART |
|
low complexity region
|
312 |
318 |
N/A |
INTRINSIC |
|
dDENN
|
324 |
391 |
2.39e-18 |
SMART |
|
low complexity region
|
560 |
579 |
N/A |
INTRINSIC |
|
low complexity region
|
657 |
675 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000071826
|
| SMART Domains |
Protein: ENSMUSP00000071729
Gene: ENSMUSG00000044279
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
22 |
N/A |
INTRINSIC |
|
transmembrane domain
|
50 |
72 |
N/A |
INTRINSIC |
|
low complexity region
|
99 |
108 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000097299
|
| SMART Domains |
Protein: ENSMUSP00000094902
Gene: ENSMUSG00000044279
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
22 |
N/A |
INTRINSIC |
|
transmembrane domain
|
50 |
72 |
N/A |
INTRINSIC |
|
low complexity region
|
99 |
108 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000163628
|
| SMART Domains |
Protein: ENSMUSP00000126402
Gene: ENSMUSG00000044279
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
22 |
N/A |
INTRINSIC |
|
SCOP:d1fwxa1
|
30 |
52 |
5e-3 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000163763
|
| SMART Domains |
Protein: ENSMUSP00000132502
Gene: ENSMUSG00000044279
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
22 |
N/A |
INTRINSIC |
|
transmembrane domain
|
50 |
72 |
N/A |
INTRINSIC |
|
low complexity region
|
99 |
108 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000169543
|
| SMART Domains |
Protein: ENSMUSP00000125760
Gene: ENSMUSG00000044279
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
22 |
N/A |
INTRINSIC |
|
transmembrane domain
|
50 |
72 |
N/A |
INTRINSIC |
|
| Meta Mutation Damage Score |
0.0898 |
| Coding Region Coverage |
- 1x: 99.9%
- 3x: 99.6%
- 10x: 98.2%
- 20x: 95.0%
|
| Validation Efficiency |
98% (51/52) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Clathrin (see MIM 118955)-mediated endocytosis is a major mechanism for internalization of proteins and lipids. Members of the connecdenn family, such as DENND1C, function as guanine nucleotide exchange factors (GEFs) for the early endosomal small GTPase RAB35 (MIM 604199) and bind to clathrin and clathrin adaptor protein-2 (AP2; see MIM 601024). Thus, connecdenns link RAB35 activation with the clathrin machinery (Marat and McPherson, 2010 [PubMed 20154091]).[supplied by OMIM, Nov 2010]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 54 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| A2m |
A |
G |
6: 121,623,788 (GRCm39) |
I385V |
probably benign |
Het |
| Ablim2 |
A |
G |
5: 36,032,241 (GRCm39) |
D622G |
probably damaging |
Het |
| Acsbg1 |
A |
T |
9: 54,549,946 (GRCm39) |
S86T |
probably damaging |
Het |
| Adam34l |
T |
A |
8: 44,079,133 (GRCm39) |
I364L |
probably benign |
Het |
| Ank2 |
A |
C |
3: 126,846,397 (GRCm39) |
D199E |
probably damaging |
Het |
| Art2a |
T |
A |
7: 101,204,452 (GRCm39) |
M29L |
probably benign |
Het |
| Bbs2 |
C |
A |
8: 94,824,863 (GRCm39) |
|
probably null |
Het |
| Brwd1 |
A |
T |
16: 95,815,074 (GRCm39) |
I1402N |
probably damaging |
Het |
| C1qtnf9 |
C |
A |
14: 61,017,069 (GRCm39) |
P200T |
possibly damaging |
Het |
| Ciita |
T |
C |
16: 10,329,767 (GRCm39) |
Y684H |
probably damaging |
Het |
| Depdc1b |
A |
T |
13: 108,460,653 (GRCm39) |
I88F |
possibly damaging |
Het |
| Dsg2 |
A |
G |
18: 20,723,274 (GRCm39) |
|
probably null |
Het |
| Foxp2 |
A |
G |
6: 15,394,761 (GRCm39) |
T154A |
probably damaging |
Het |
| Gmeb1 |
A |
T |
4: 131,969,688 (GRCm39) |
V95D |
possibly damaging |
Het |
| Gmeb1 |
A |
G |
4: 131,973,324 (GRCm39) |
S62P |
probably benign |
Het |
| Golga5 |
T |
A |
12: 102,438,732 (GRCm39) |
V149D |
probably damaging |
Het |
| H1f7 |
A |
C |
15: 98,154,652 (GRCm39) |
S166A |
unknown |
Het |
| Hivep1 |
T |
C |
13: 42,311,846 (GRCm39) |
L1362P |
probably benign |
Het |
| Ift81 |
T |
C |
5: 122,740,414 (GRCm39) |
M205V |
probably benign |
Het |
| Iglv3 |
T |
A |
16: 19,059,968 (GRCm39) |
Q120L |
possibly damaging |
Het |
| Ints9 |
C |
T |
14: 65,217,659 (GRCm39) |
T62I |
possibly damaging |
Het |
| Itga1 |
G |
T |
13: 115,096,673 (GRCm39) |
|
probably null |
Het |
| Katnip |
C |
T |
7: 125,472,006 (GRCm39) |
H1532Y |
probably benign |
Het |
| Krt77 |
A |
C |
15: 101,773,988 (GRCm39) |
I222S |
probably damaging |
Het |
| Mrps25 |
A |
G |
6: 92,160,819 (GRCm39) |
|
probably null |
Het |
| Mrps27 |
A |
G |
13: 99,548,754 (GRCm39) |
T297A |
probably benign |
Het |
| Mup15 |
A |
T |
4: 61,357,850 (GRCm39) |
L7Q |
unknown |
Het |
| Naip1 |
T |
A |
13: 100,562,169 (GRCm39) |
I999F |
probably damaging |
Het |
| Ndst1 |
A |
G |
18: 60,836,901 (GRCm39) |
F387L |
probably damaging |
Het |
| Nudt9 |
T |
C |
5: 104,202,151 (GRCm39) |
S71P |
probably damaging |
Het |
| Or14c41 |
C |
A |
7: 86,235,245 (GRCm39) |
A254D |
probably benign |
Het |
| Or2b4 |
A |
G |
17: 38,116,432 (GRCm39) |
Y132C |
probably damaging |
Het |
| Or5al1 |
T |
G |
2: 85,990,380 (GRCm39) |
E111D |
probably damaging |
Het |
| Pak4 |
C |
T |
7: 28,264,690 (GRCm39) |
V71I |
possibly damaging |
Het |
| Pcolce |
A |
C |
5: 137,603,496 (GRCm39) |
S446A |
probably benign |
Het |
| Per2 |
T |
A |
1: 91,349,251 (GRCm39) |
N1040I |
probably damaging |
Het |
| Pla2g6 |
A |
T |
15: 79,188,592 (GRCm39) |
S422T |
probably benign |
Het |
| Pla2r1 |
G |
T |
2: 60,332,543 (GRCm39) |
|
probably null |
Het |
| Plcb4 |
T |
C |
2: 135,752,094 (GRCm39) |
V100A |
possibly damaging |
Het |
| Polr1d |
C |
T |
5: 147,015,533 (GRCm39) |
T72M |
probably benign |
Het |
| Psd3 |
A |
C |
8: 68,270,791 (GRCm39) |
|
probably benign |
Het |
| Radil |
T |
C |
5: 142,480,697 (GRCm39) |
E586G |
probably damaging |
Het |
| Rnf150 |
A |
G |
8: 83,591,093 (GRCm39) |
N152S |
possibly damaging |
Het |
| Serpina1b |
T |
A |
12: 103,695,515 (GRCm39) |
|
probably null |
Het |
| Setd3 |
C |
T |
12: 108,124,114 (GRCm39) |
E192K |
probably benign |
Het |
| Ssu2 |
G |
A |
6: 112,351,781 (GRCm39) |
H315Y |
probably damaging |
Het |
| Taok3 |
T |
A |
5: 117,410,262 (GRCm39) |
M818K |
probably benign |
Het |
| Tmem131l |
T |
C |
3: 83,829,471 (GRCm39) |
N1062S |
probably benign |
Het |
| Tmx4 |
C |
T |
2: 134,481,425 (GRCm39) |
|
probably benign |
Het |
| Traip |
G |
A |
9: 107,845,933 (GRCm39) |
C342Y |
probably benign |
Het |
| Traj9 |
G |
T |
14: 54,446,890 (GRCm39) |
|
probably benign |
Het |
| Ttn |
A |
T |
2: 76,641,587 (GRCm39) |
L5176Q |
possibly damaging |
Het |
| Vegfc |
T |
C |
8: 54,634,289 (GRCm39) |
S323P |
probably benign |
Het |
| Vinac1 |
T |
C |
2: 128,879,301 (GRCm39) |
D875G |
possibly damaging |
Het |
|
| Other mutations in Dennd1c |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01016:Dennd1c
|
APN |
17 |
57,373,839 (GRCm39) |
missense |
probably damaging |
0.99 |
|
IGL02729:Dennd1c
|
APN |
17 |
57,373,637 (GRCm39) |
missense |
probably benign |
0.34 |
|
IGL03185:Dennd1c
|
APN |
17 |
57,373,803 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0067:Dennd1c
|
UTSW |
17 |
57,382,465 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0067:Dennd1c
|
UTSW |
17 |
57,382,465 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0288:Dennd1c
|
UTSW |
17 |
57,383,870 (GRCm39) |
splice site |
probably null |
|
|
R0380:Dennd1c
|
UTSW |
17 |
57,380,822 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0381:Dennd1c
|
UTSW |
17 |
57,380,822 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0389:Dennd1c
|
UTSW |
17 |
57,374,649 (GRCm39) |
missense |
probably benign |
0.02 |
|
R1528:Dennd1c
|
UTSW |
17 |
57,373,935 (GRCm39) |
missense |
probably benign |
|
|
R1892:Dennd1c
|
UTSW |
17 |
57,374,083 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1936:Dennd1c
|
UTSW |
17 |
57,380,889 (GRCm39) |
splice site |
probably benign |
|
|
R2216:Dennd1c
|
UTSW |
17 |
57,381,492 (GRCm39) |
critical splice donor site |
probably null |
|
|
R3021:Dennd1c
|
UTSW |
17 |
57,381,180 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
R3160:Dennd1c
|
UTSW |
17 |
57,373,562 (GRCm39) |
missense |
possibly damaging |
0.87 |
|
R3162:Dennd1c
|
UTSW |
17 |
57,373,562 (GRCm39) |
missense |
possibly damaging |
0.87 |
|
R3162:Dennd1c
|
UTSW |
17 |
57,373,562 (GRCm39) |
missense |
possibly damaging |
0.87 |
|
R4133:Dennd1c
|
UTSW |
17 |
57,383,980 (GRCm39) |
missense |
possibly damaging |
0.53 |
|
R4831:Dennd1c
|
UTSW |
17 |
57,373,428 (GRCm39) |
nonsense |
probably null |
|
|
R4987:Dennd1c
|
UTSW |
17 |
57,380,852 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R5417:Dennd1c
|
UTSW |
17 |
57,373,755 (GRCm39) |
frame shift |
probably null |
|
|
R5418:Dennd1c
|
UTSW |
17 |
57,373,755 (GRCm39) |
frame shift |
probably null |
|
|
R6259:Dennd1c
|
UTSW |
17 |
57,374,104 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6722:Dennd1c
|
UTSW |
17 |
57,373,802 (GRCm39) |
missense |
probably benign |
|
|
R7099:Dennd1c
|
UTSW |
17 |
57,374,915 (GRCm39) |
critical splice donor site |
probably null |
|
|
R7491:Dennd1c
|
UTSW |
17 |
57,379,379 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7595:Dennd1c
|
UTSW |
17 |
57,378,633 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8081:Dennd1c
|
UTSW |
17 |
57,381,139 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R8198:Dennd1c
|
UTSW |
17 |
57,373,460 (GRCm39) |
missense |
possibly damaging |
0.84 |
|
R8896:Dennd1c
|
UTSW |
17 |
57,381,512 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9155:Dennd1c
|
UTSW |
17 |
57,373,796 (GRCm39) |
missense |
probably benign |
0.01 |
|
Z1177:Dennd1c
|
UTSW |
17 |
57,381,330 (GRCm39) |
missense |
probably benign |
0.01 |
|
| Predicted Primers |
PCR Primer
(F):5'- AGCCCCAGATACATTTATCAAGG -3'
(R):5'- TCTCTCAGCAAGCTGGATCC -3'
Sequencing Primer
(F):5'- CAGCTTTATTGAGAGTTGGGAAC -3'
(R):5'- TCTCAGCAAGCTGGATCCTAGAC -3'
|
| Posted On |
2018-02-28 |
Incidental Mutation