Incidental Mutation 'R6244:Usp49'
ID505491
Institutional Source Beutler Lab
Gene Symbol Usp49
Ensembl Gene ENSMUSG00000090115
Gene Nameubiquitin specific peptidase 49
Synonyms
MMRRC Submission
Accession Numbers
Is this an essential gene? Possibly non essential (E-score: 0.257) question?
Stock #R6244 (G1)
Quality Score225.009
Status Validated
Chromosome17
Chromosomal Location47630690-47686738 bp(+) (GRCm38)
Type of Mutationnonsense
DNA Base Change (assembly) T to A at 47672902 bp
ZygosityHeterozygous
Amino Acid Change Cysteine to Stop codon at position 61 (C61*)
Ref Sequence ENSEMBL: ENSMUSP00000120034 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000024779] [ENSMUST00000132397] [ENSMUST00000145314] [ENSMUST00000152724]
Predicted Effect probably null
Transcript: ENSMUST00000024779
AA Change: C277*
SMART Domains Protein: ENSMUSP00000024779
Gene: ENSMUSG00000090115
AA Change: C277*

DomainStartEndE-ValueType
ZnF_UBP 25 74 4.21e-17 SMART
coiled coil region 165 203 N/A INTRINSIC
low complexity region 224 237 N/A INTRINSIC
Pfam:UCH 249 651 5.4e-61 PFAM
Pfam:UCH_1 337 633 3.8e-13 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000131550
Predicted Effect probably benign
Transcript: ENSMUST00000132397
SMART Domains Protein: ENSMUSP00000117658
Gene: ENSMUSG00000023984

DomainStartEndE-ValueType
Pfam:Med20 1 149 1.6e-40 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000145314
Predicted Effect probably null
Transcript: ENSMUST00000152724
AA Change: C61*
SMART Domains Protein: ENSMUSP00000120034
Gene: ENSMUSG00000090115
AA Change: C61*

DomainStartEndE-ValueType
low complexity region 8 21 N/A INTRINSIC
Pfam:UCH 33 374 2.5e-40 PFAM
Pfam:UCH_1 119 374 1.5e-10 PFAM
Meta Mutation Damage Score 0.9755 question?
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.7%
  • 10x: 98.3%
  • 20x: 95.1%
Validation Efficiency 96% (82/85)
Allele List at MGI
Other mutations in this stock
Total: 84 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4932438A13Rik T C 3: 36,956,999 V1782A probably benign Het
6430550D23Rik T C 2: 156,003,230 H113R possibly damaging Het
Adgrf3 A T 5: 30,197,533 M499K probably benign Het
Adgrv1 G A 13: 81,106,931 T211I probably damaging Het
Adss C T 1: 177,776,829 E153K probably benign Het
Ago4 C A 4: 126,511,487 G431V possibly damaging Het
Araf G T X: 20,860,100 R601L probably damaging Homo
Atp2b4 T A 1: 133,726,561 I769F probably damaging Het
Atp9a T C 2: 168,689,352 probably null Het
Brap C A 5: 121,665,309 D173E probably benign Het
Brca2 G T 5: 150,566,978 R3035L probably benign Het
Ccdc8 C A 7: 16,996,251 P555Q probably benign Het
Ccser2 A G 14: 36,940,718 S170P probably benign Het
Celsr2 T C 3: 108,393,128 H860R probably damaging Het
Cenpc1 C A 5: 86,046,385 R174M probably damaging Het
Cfap57 T G 4: 118,579,410 I930L probably damaging Het
Cx3cr1 C T 9: 120,051,694 R214H probably damaging Het
Cyp4f14 T A 17: 32,906,317 H429L probably benign Het
D5Ertd579e A G 5: 36,615,276 F592L probably damaging Het
Ddb1 A G 19: 10,625,923 E865G probably damaging Het
Ddx50 A T 10: 62,621,566 probably null Het
Dpp6 A G 5: 27,049,628 T14A probably damaging Het
Echs1 C A 7: 140,113,069 Q51H possibly damaging Het
Ecm2 A T 13: 49,530,307 D587V probably damaging Het
Ect2l A T 10: 18,140,397 Y666N possibly damaging Het
Epha2 G A 4: 141,316,912 G342S probably benign Het
Fbxo33 C A 12: 59,206,079 K211N probably benign Het
Fchsd2 A G 7: 101,259,776 probably null Het
Fen1 A G 19: 10,200,687 V131A probably damaging Het
Fetub C T 16: 22,932,331 R143C probably damaging Het
Flnb A G 14: 7,892,092 E587G probably damaging Het
Foxd3 A G 4: 99,657,240 T206A possibly damaging Het
Fut1 A G 7: 45,619,306 E228G possibly damaging Het
Galnt13 T C 2: 54,933,548 F379L probably damaging Het
Gcnt2 A C 13: 40,861,241 E296A probably damaging Het
Gm7145 T A 1: 117,986,140 C251S probably damaging Het
Gpam G A 19: 55,070,985 P810L probably damaging Het
Il1rl2 T A 1: 40,327,566 L87M possibly damaging Het
Itgae A G 11: 73,145,601 S1122G probably damaging Het
Kcnh7 T A 2: 63,182,226 D46V probably damaging Het
Kcnn3 T G 3: 89,645,523 Y511* probably null Het
Kdm3b T A 18: 34,793,005 I66N probably damaging Het
Klk1b27 A T 7: 44,054,550 H39L probably benign Het
Kmo C T 1: 175,659,695 T404I possibly damaging Het
Krt222 C T 11: 99,235,058 probably null Het
Magi3 G C 3: 104,015,697 H1235D probably benign Het
Mapk8ip1 C A 2: 92,389,244 G81C probably damaging Het
Med15 G A 16: 17,652,745 Q583* probably null Het
Mroh2a T C 1: 88,256,754 V1453A probably benign Het
Myh13 A G 11: 67,362,501 M1488V probably benign Het
Naip2 A T 13: 100,152,137 F1193L probably damaging Het
Nop58 T A 1: 59,702,855 M181K probably damaging Het
Npepps A T 11: 97,213,790 V796D probably damaging Het
Nr1d1 A G 11: 98,770,537 F301S probably damaging Het
Nynrin G A 14: 55,868,028 V832I probably damaging Het
Olfr1046 T A 2: 86,217,222 T163S possibly damaging Het
Olfr1508 T A 14: 52,463,895 Y38F probably damaging Het
Olfr320 A T 11: 58,684,004 T44S possibly damaging Het
Olfr342 T A 2: 36,528,341 C310S probably benign Het
Olfr61 C A 7: 140,638,433 S244Y probably damaging Het
Phrf1 T A 7: 141,237,673 C132S probably damaging Het
Plekhn1 T C 4: 156,230,558 probably null Het
Polr2a G A 11: 69,744,226 T569M probably damaging Het
Prr29 A G 11: 106,376,632 probably null Het
Rsf1 CG CGACGGCGGAG 7: 97,579,908 probably benign Homo
Sc5d T C 9: 42,255,421 E274G probably benign Het
Serpina1d A T 12: 103,764,828 probably null Het
Serpinb11 T A 1: 107,372,242 I106N probably damaging Het
Setd2 G A 9: 110,548,665 R516K probably damaging Het
Sirt2 G T 7: 28,787,797 C291F probably damaging Het
Stac3 T C 10: 127,508,175 V314A probably damaging Het
Stat6 C T 10: 127,657,712 probably null Het
Strn3 A G 12: 51,610,107 V712A probably damaging Het
Tmc5 G T 7: 118,634,214 G84C possibly damaging Het
Tnik C A 3: 28,650,179 L996I probably damaging Het
Trim30d G T 7: 104,487,610 T129K probably damaging Het
Triml1 G T 8: 43,138,756 Y188* probably null Het
Trpc7 A G 13: 56,773,892 Y760H probably damaging Het
Uaca G A 9: 60,870,044 R571Q probably damaging Het
Ubash3a A T 17: 31,239,272 Q575L possibly damaging Het
Vmn2r18 A T 5: 151,584,651 V336E probably damaging Het
Vwa8 T C 14: 79,086,662 V1135A probably benign Het
Zcchc4 T C 5: 52,783,161 V24A probably benign Het
Zfp354c A G 11: 50,814,971 Y426H probably benign Het
Other mutations in Usp49
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00721:Usp49 APN 17 47680703 missense probably damaging 1.00
R0605:Usp49 UTSW 17 47674926 splice site probably null
R0919:Usp49 UTSW 17 47672451 missense probably benign 0.17
R1167:Usp49 UTSW 17 47672226 missense possibly damaging 0.94
R1675:Usp49 UTSW 17 47673410 missense probably damaging 1.00
R1733:Usp49 UTSW 17 47672313 missense probably damaging 1.00
R2344:Usp49 UTSW 17 47672903 missense probably damaging 1.00
R3737:Usp49 UTSW 17 47672318 missense probably damaging 1.00
R4078:Usp49 UTSW 17 47674749 missense probably damaging 1.00
R5079:Usp49 UTSW 17 47673221 missense possibly damaging 0.77
R6197:Usp49 UTSW 17 47673347 missense possibly damaging 0.66
R6303:Usp49 UTSW 17 47680822 missense probably damaging 0.98
R6536:Usp49 UTSW 17 47679692 missense probably damaging 1.00
R7207:Usp49 UTSW 17 47678877 missense probably benign 0.06
R7304:Usp49 UTSW 17 47672871 missense possibly damaging 0.78
R7418:Usp49 UTSW 17 47672168 nonsense probably null
R7508:Usp49 UTSW 17 47672280 missense probably benign 0.44
R7648:Usp49 UTSW 17 47674828 missense possibly damaging 0.93
R7705:Usp49 UTSW 17 47678948 missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- CTCTGGTTCCAGAAGAGCTC -3'
(R):5'- CTTGTTCTGAATGAGCTCCAGG -3'

Sequencing Primer
(F):5'- TTCCAGAAGAGCTCCCGCG -3'
(R):5'- TCCAGGCTCCTGCTGATG -3'
Posted On2018-02-28