Mutagenetix > Incidental Mutations

Incidental Mutation 'R6259:Synrg'

506564

Institutional Source

Beutler Lab

Gene Symbol

Synrg

Ensembl Gene

ENSMUSG00000034940

Gene Name

synergin, gamma

Synonyms

Ap1gbp1, L71-5

MMRRC Submission

044376-MU

Accession Numbers

Is this an essential gene?

Essential (E-score: 1.000) question?

Stock #

R6259 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

83964428-84044578 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 84008658 bp

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glutamic Acid at position 563 (D563E)

Ref Sequence

ENSEMBL: ENSMUSP00000139103 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000049714] [ENSMUST00000092834] [ENSMUST00000183456] [ENSMUST00000183714]

Predicted Effect

probably damaging
Transcript: ENSMUST00000049714
AA Change: D564E

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000059000
Gene: ENSMUSG00000034940
AA Change: D564E

Domain	Start	End	E-Value	Type
low complexity region	5	24	N/A	INTRINSIC
low complexity region	54	65	N/A	INTRINSIC
coiled coil region	113	153	N/A	INTRINSIC
Blast:EH	301	368	8e-6	BLAST
low complexity region	560	569	N/A	INTRINSIC
low complexity region	644	662	N/A	INTRINSIC
low complexity region	770	784	N/A	INTRINSIC
low complexity region	1036	1050	N/A	INTRINSIC
low complexity region	1295	1306	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000092834
AA Change: D485E

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000090510
Gene: ENSMUSG00000034940
AA Change: D485E

Domain	Start	End	E-Value	Type
low complexity region	5	24	N/A	INTRINSIC
low complexity region	53	64	N/A	INTRINSIC
coiled coil region	112	152	N/A	INTRINSIC
Blast:EH	222	289	5e-6	BLAST
low complexity region	481	490	N/A	INTRINSIC
low complexity region	565	583	N/A	INTRINSIC
internal_repeat_1	617	755	7.57e-6	PROSPERO
internal_repeat_1	746	879	7.57e-6	PROSPERO
low complexity region	880	894	N/A	INTRINSIC
low complexity region	1127	1138	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000183456
AA Change: D664E

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000138969
Gene: ENSMUSG00000034940
AA Change: D664E

Domain	Start	End	E-Value	Type
low complexity region	5	24	N/A	INTRINSIC
low complexity region	53	64	N/A	INTRINSIC
coiled coil region	112	152	N/A	INTRINSIC
low complexity region	197	209	N/A	INTRINSIC
Blast:EH	401	468	7e-6	BLAST
low complexity region	660	669	N/A	INTRINSIC
low complexity region	744	762	N/A	INTRINSIC
internal_repeat_1	796	934	2.26e-5	PROSPERO
internal_repeat_1	925	1058	2.26e-5	PROSPERO
low complexity region	1059	1073	N/A	INTRINSIC
low complexity region	1318	1329	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000183714
AA Change: D563E

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000139103
Gene: ENSMUSG00000034940
AA Change: D563E

Domain	Start	End	E-Value	Type
low complexity region	5	24	N/A	INTRINSIC
low complexity region	53	64	N/A	INTRINSIC
coiled coil region	112	152	N/A	INTRINSIC
Blast:EH	300	367	6e-6	BLAST
low complexity region	559	568	N/A	INTRINSIC
low complexity region	643	661	N/A	INTRINSIC
internal_repeat_1	695	833	1.34e-5	PROSPERO
internal_repeat_1	824	957	1.34e-5	PROSPERO
low complexity region	958	972	N/A	INTRINSIC
low complexity region	1205	1216	N/A	INTRINSIC

Coding Region Coverage

1x: 99.9%
3x: 99.7%
10x: 98.5%
20x: 96.0%

Validation Efficiency

99% (74/75)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein that interacts with the gamma subunit of AP1 clathrin-adaptor complex. The AP1 complex is located at the trans-Golgi network and associates specific proteins with clathrin-coated vesicles. This encoded protein may act to connect the AP1 complex to other proteins. Alternatively spliced transcript variants that encode different isoforms have been described for this gene. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 77 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700061G19Rik	A	G	17: 56,877,513	Y96C	probably benign	Het
5730507C01Rik	C	A	12: 18,534,119	N393K	probably benign	Het
Acap3	A	T	4: 155,896,118	I19F	possibly damaging	Het
Adamts5	C	T	16: 85,899,753	R172H	probably benign	Het
Adgra3	A	G	5: 49,999,141	F416L	possibly damaging	Het
Amy1	T	C	3: 113,569,410	D96G	possibly damaging	Het
Ank2	A	G	3: 127,016,986	S484P	probably benign	Het
Arsa	A	G	15: 89,475,521	C68R	probably damaging	Het
Asprv1	A	G	6: 86,628,379	Y69C	probably benign	Het
Ass1	A	G	2: 31,488,642	E162G	possibly damaging	Het
Atf7	G	T	15: 102,547,238	N230K	probably damaging	Het
Atp10b	A	G	11: 43,201,238	M367V	probably benign	Het
Atp11b	A	G	3: 35,806,901	Y179C	probably damaging	Het
BC004004	A	T	17: 29,298,712	Q300L	possibly damaging	Het
Bglap3	A	T	3: 88,368,760	I95N	probably damaging	Het
Cacna1h	T	C	17: 25,397,656		probably null	Het
Caskin2	C	T	11: 115,800,453	G1141D	probably damaging	Het
Clcn4	G	A	7: 7,291,530	R351W	possibly damaging	Het
Col11a1	T	C	3: 114,138,447	C89R	probably benign	Het
Csrp1	T	G	1: 135,739,514		probably null	Het
Cwf19l2	T	C	9: 3,458,879	I776T	probably damaging	Het
Cyp2b19	A	T	7: 26,771,392	Q486L	possibly damaging	Het
Cyp2j9	T	A	4: 96,584,006	Y165F	probably benign	Het
Dab1	C	T	4: 104,731,751	A524V	probably benign	Het
Dennd1c	G	A	17: 57,067,104	R522C	probably damaging	Het
Dmgdh	T	C	13: 93,752,308	V818A	probably benign	Het
Dst	T	A	1: 34,182,396	V2427E	probably benign	Het
Duox1	C	T	2: 122,344,783	T1354M	probably benign	Het
Ehbp1	A	G	11: 22,285,684		probably benign	Het
Epc2	T	A	2: 49,488,854		probably null	Het
Eya2	T	C	2: 165,716,099	V205A	probably benign	Het
Fam84a	T	A	12: 14,150,645	D27V	probably damaging	Het
Fat4	A	G	3: 39,007,246	H4326R	probably benign	Het
Gaa	C	A	11: 119,281,171	A700D	probably benign	Het
Gm10100	G	T	10: 77,726,664	C60F	possibly damaging	Het
Hhip	T	A	8: 79,972,404	R678W	probably damaging	Het
Il21r	T	A	7: 125,630,719	I266K	possibly damaging	Het
Itgb4	C	T	11: 115,984,157	R447W	probably benign	Het
Kif26b	T	C	1: 178,917,405	S1689P	probably damaging	Het
L3mbtl2	A	G	15: 81,681,927	E317G	probably damaging	Het
Lgr6	C	T	1: 134,994,010	A199T	probably damaging	Het
Lrr1	A	G	12: 69,174,815	N244D	probably damaging	Het
Lrrk2	A	T	15: 91,702,247	H422L	probably benign	Het
Map4k5	A	G	12: 69,852,740	S46P	probably damaging	Het
Ngf	A	G	3: 102,509,797		probably benign	Het
Nploc4	T	C	11: 120,385,865	I452V	probably benign	Het
Oas1d	T	A	5: 120,919,181	Y283*	probably null	Het
Olfr1156	T	C	2: 87,949,435	N266S	probably benign	Het
Olfr1463	A	G	19: 13,234,421	H57R	probably damaging	Het
Olfr648	A	T	7: 104,180,054	M118K	possibly damaging	Het
Olfr689	A	T	7: 105,314,057	I18F	probably benign	Het
Pdzrn4	A	T	15: 92,757,681	E485V	probably damaging	Het
Peg3	A	G	7: 6,709,811	V804A	probably damaging	Het
Piezo2	T	A	18: 63,117,678	Y450F	possibly damaging	Het
Pprc1	T	A	19: 46,064,410	V789E	probably damaging	Het
Prcc	A	G	3: 87,862,147	M436T	possibly damaging	Het
Prepl	A	T	17: 85,070,431	V507D	probably damaging	Het
Rag1	T	A	2: 101,644,452	N115I	possibly damaging	Het
Rap1gap	T	C	4: 137,681,757		probably null	Het
Reln	A	C	5: 22,060,333	F454V	probably damaging	Het
Slc39a11	A	T	11: 113,463,954	S150T	probably benign	Het
Slc45a1	T	A	4: 150,638,360	I356F	possibly damaging	Het
Snrnp200	G	A	2: 127,218,423	G529D	possibly damaging	Het
Stkld1	A	T	2: 26,949,381	D353V	possibly damaging	Het
Susd2	T	C	10: 75,638,046	S572G	probably damaging	Het
Tmem131	C	T	1: 36,819,128	V713I	probably benign	Het
Tnfrsf8	A	G	4: 145,277,524		probably null	Het
Trim26	C	T	17: 36,856,218	A267V	probably benign	Het
Trpm1	T	G	7: 64,268,478	F522C	possibly damaging	Het
Uggt1	T	C	1: 36,234,916	I29V	probably benign	Het
Unc5d	C	T	8: 28,666,792	M808I	probably benign	Het
Vmn2r108	T	A	17: 20,463,109	D611V	possibly damaging	Het
Vps13a	A	C	19: 16,687,170	Y1436*	probably null	Het
Wdfy3	C	T	5: 101,872,965	R2491Q	possibly damaging	Het
Zfp518a	G	T	19: 40,912,781	V385F	probably benign	Het
Zfp541	C	T	7: 16,095,526	A1222V	probably benign	Het
Zfp709	TCGACG	TCG	8: 71,890,708		probably benign	Het

Other mutations in Synrg

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00473:Synrg	APN	11	84039246	missense	probably damaging	0.98
IGL01640:Synrg	APN	11	83981508	missense	probably damaging	1.00
IGL01936:Synrg	APN	11	84019705	missense	probably benign	0.00
IGL02311:Synrg	APN	11	84019804	missense	probably benign	0.01
IGL02836:Synrg	APN	11	84001978	splice site	probably benign
IGL02868:Synrg	APN	11	83987050	splice site	probably benign
IGL03185:Synrg	APN	11	83981479	missense	probably damaging	1.00
IGL03224:Synrg	APN	11	84039666	missense	possibly damaging	0.86
polaris	UTSW	11	84019914	missense	probably damaging	1.00
P0041:Synrg	UTSW	11	83982311	splice site	probably benign
R0023:Synrg	UTSW	11	84008653	missense	probably damaging	1.00
R0044:Synrg	UTSW	11	84009181	missense	probably damaging	1.00
R0082:Synrg	UTSW	11	83987910	splice site	probably benign
R0227:Synrg	UTSW	11	84009432	missense	probably damaging	1.00
R0361:Synrg	UTSW	11	84024337	splice site	probably null
R0494:Synrg	UTSW	11	84019543	missense	probably benign
R0548:Synrg	UTSW	11	83982188	splice site	probably benign
R0744:Synrg	UTSW	11	84024305	nonsense	probably null
R1114:Synrg	UTSW	11	84023436	splice site	probably benign
R1240:Synrg	UTSW	11	84023356	missense	probably damaging	1.00
R1989:Synrg	UTSW	11	84019955	critical splice donor site	probably null
R2247:Synrg	UTSW	11	84009376	missense	probably damaging	1.00
R2263:Synrg	UTSW	11	83977152	missense	possibly damaging	0.79
R2420:Synrg	UTSW	11	84009224	missense	probably damaging	0.96
R2421:Synrg	UTSW	11	84009224	missense	probably damaging	0.96
R2937:Synrg	UTSW	11	83994354	missense	probably damaging	1.00
R3783:Synrg	UTSW	11	84001920	missense	probably damaging	0.99
R3784:Synrg	UTSW	11	84001920	missense	probably damaging	0.99
R3785:Synrg	UTSW	11	84001920	missense	probably damaging	0.99
R3787:Synrg	UTSW	11	84001920	missense	probably damaging	0.99
R3925:Synrg	UTSW	11	84040899	missense	probably benign	0.03
R3945:Synrg	UTSW	11	84023406	missense	probably damaging	1.00
R3950:Synrg	UTSW	11	83989815	missense	probably damaging	1.00
R5165:Synrg	UTSW	11	83990935	missense	probably benign	0.02
R5216:Synrg	UTSW	11	83982196	missense	probably damaging	0.99
R5293:Synrg	UTSW	11	83981499	missense	probably damaging	1.00
R5561:Synrg	UTSW	11	84002240	splice site	probably null
R5575:Synrg	UTSW	11	84009552	critical splice donor site	probably null
R6079:Synrg	UTSW	11	84024300	missense	probably damaging	1.00
R6085:Synrg	UTSW	11	84039661	missense	possibly damaging	0.80
R6138:Synrg	UTSW	11	84024300	missense	probably damaging	1.00
R6751:Synrg	UTSW	11	83981425	missense	probably damaging	1.00
R6795:Synrg	UTSW	11	84019914	missense	probably damaging	1.00
R6944:Synrg	UTSW	11	84025086	missense	probably damaging	1.00
R7092:Synrg	UTSW	11	84008857	missense	possibly damaging	0.95
R7109:Synrg	UTSW	11	84039672	missense	possibly damaging	0.82
R7291:Synrg	UTSW	11	84009381	missense	probably damaging	1.00
R7489:Synrg	UTSW	11	83990825	missense	probably benign	0.33
R7794:Synrg	UTSW	11	84019574	missense	probably benign	0.10
R7982:Synrg	UTSW	11	84019818	missense	probably damaging	1.00
R8327:Synrg	UTSW	11	84008905	missense	probably benign	0.26
U15987:Synrg	UTSW	11	84024300	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AGAGTCTTGAGCCGTGCTTG -3'
(R):5'- GAAACGGACTTTGCTGTGC -3'

Sequencing Primer
(F):5'- CCTTATCACTGGCTTTAATGGAGAC -3'
(R):5'- GAAACGGACTTTGCTGTGCTAAATG -3'

Posted On

2018-03-15