Incidental Mutation 'R6260:Zfyve28'
ID 506612
Institutional Source Beutler Lab
Gene Symbol Zfyve28
Ensembl Gene ENSMUSG00000037224
Gene Name zinc finger, FYVE domain containing 28
Synonyms 9630058O20Rik
MMRRC Submission 044377-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R6260 (G1)
Quality Score 225.009
Status Validated
Chromosome 5
Chromosomal Location 34352237-34445793 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 34356216 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Asparagine to Aspartic acid at position 762 (N762D)
Ref Sequence ENSEMBL: ENSMUSP00000092464 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000094868]
AlphaFold Q6ZPK7
Predicted Effect probably damaging
Transcript: ENSMUST00000094868
AA Change: N762D

PolyPhen 2 Score 0.994 (Sensitivity: 0.69; Specificity: 0.97)
SMART Domains Protein: ENSMUSP00000092464
Gene: ENSMUSG00000037224
AA Change: N762D

DomainStartEndE-ValueType
low complexity region 718 730 N/A INTRINSIC
FYVE 827 896 8.73e-25 SMART
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.7%
  • 10x: 98.4%
  • 20x: 95.6%
Validation Efficiency 99% (77/78)
Allele List at MGI
Other mutations in this stock
Total: 79 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca7 T A 10: 79,844,821 (GRCm39) N1514K probably damaging Het
Abcb4 G T 5: 8,984,219 (GRCm39) G650* probably null Het
Acsbg1 T A 9: 54,535,751 (GRCm39) probably null Het
Alms1 A T 6: 85,605,717 (GRCm39) K2456* probably null Het
Alppl2 A T 1: 87,016,184 (GRCm39) M225K probably damaging Het
Ank2 C T 3: 126,737,206 (GRCm39) V2806I probably benign Het
Atxn10 A T 15: 85,346,612 (GRCm39) I457F probably benign Het
Cad G T 5: 31,224,144 (GRCm39) M800I probably null Het
Carmil3 T A 14: 55,737,889 (GRCm39) L815Q probably damaging Het
Ccz1 A G 5: 143,940,859 (GRCm39) probably null Het
Cdc73 G A 1: 143,567,211 (GRCm39) T104I probably benign Het
Cfap52 A T 11: 67,829,780 (GRCm39) C330S possibly damaging Het
Clec16a C T 16: 10,512,712 (GRCm39) probably benign Het
Cntn3 A G 6: 102,254,178 (GRCm39) probably null Het
Crocc2 A G 1: 93,141,360 (GRCm39) K1171R possibly damaging Het
Ctsa T C 2: 164,676,281 (GRCm39) V86A probably damaging Het
Dab1 C T 4: 104,588,948 (GRCm39) A524V probably benign Het
Ddhd2 A G 8: 26,242,144 (GRCm39) F244L probably benign Het
Ddn A G 15: 98,703,735 (GRCm39) V519A possibly damaging Het
Dip2b G T 15: 100,060,583 (GRCm39) V253L probably benign Het
Dnah17 C A 11: 118,017,148 (GRCm39) W197C probably damaging Het
Dnah17 A T 11: 118,017,150 (GRCm39) W197R probably damaging Het
Dnah17 C T 11: 118,017,149 (GRCm39) W197* probably null Het
Ercc6 T A 14: 32,279,813 (GRCm39) D609E probably benign Het
Erg C A 16: 95,181,100 (GRCm39) R147L probably damaging Het
Fbxo41 A T 6: 85,455,537 (GRCm39) L549H probably damaging Het
Foxd4 A G 19: 24,876,968 (GRCm39) S411P probably benign Het
Gaa C A 11: 119,171,997 (GRCm39) A700D probably benign Het
Galntl6 T A 8: 58,337,515 (GRCm39) D135V probably damaging Het
Gm1043 G C 5: 37,331,816 (GRCm39) G832A probably benign Het
Gm21103 C T 14: 17,484,841 (GRCm39) E68K probably damaging Het
Gpam A G 19: 55,071,838 (GRCm39) V301A probably benign Het
H2-M10.1 T A 17: 36,634,994 (GRCm39) I304F unknown Het
Itgb4 C T 11: 115,874,983 (GRCm39) R447W probably benign Het
Jak3 C A 8: 72,131,954 (GRCm39) Q177K probably benign Het
Kcnu1 G A 8: 26,341,919 (GRCm39) R88H probably damaging Het
Kng1 A T 16: 22,877,371 (GRCm39) I60F possibly damaging Het
Krt77 A T 15: 101,772,807 (GRCm39) Y257* probably null Het
Lcor A T 19: 41,570,809 (GRCm39) S1C probably null Het
Lcor G T 19: 41,570,810 (GRCm39) S1I possibly damaging Het
Lgr6 C T 1: 134,921,748 (GRCm39) A199T probably damaging Het
Map4k5 C A 12: 69,878,336 (GRCm39) R355L probably benign Het
Mefv C T 16: 3,530,898 (GRCm39) R498H probably benign Het
Mical3 A T 6: 120,985,991 (GRCm39) L150Q probably damaging Het
Mtcl1 T A 17: 66,650,536 (GRCm39) Q1340L probably damaging Het
Nfic A T 10: 81,256,351 (GRCm39) C126* probably null Het
Nisch T A 14: 30,899,085 (GRCm39) probably benign Het
Nt5dc3 A G 10: 86,647,395 (GRCm39) Y130C probably damaging Het
Or2ag1b A T 7: 106,288,079 (GRCm39) N286K probably damaging Het
Or4f15 C T 2: 111,814,396 (GRCm39) V8I probably benign Het
Or6c65 C A 10: 129,603,389 (GRCm39) T8K probably benign Het
Pcdhb12 T C 18: 37,569,892 (GRCm39) V346A probably benign Het
Pla2g4a A G 1: 149,733,238 (GRCm39) S504P probably benign Het
Plin2 G T 4: 86,575,526 (GRCm39) A341D probably damaging Het
Plxnb2 A T 15: 89,049,494 (GRCm39) I575N probably benign Het
Pnma8b T G 7: 16,680,158 (GRCm39) W381G probably benign Het
Psma8 A G 18: 14,854,324 (GRCm39) D68G probably damaging Het
Rcor3 G A 1: 191,808,559 (GRCm39) H207Y probably benign Het
Rwdd2b C A 16: 87,231,356 (GRCm39) G266V probably damaging Het
Ryr3 A G 2: 112,490,449 (GRCm39) F3795S probably damaging Het
Slc28a2b A T 2: 122,353,963 (GRCm39) I530F probably damaging Het
Sord T A 2: 122,089,613 (GRCm39) probably null Het
Spdl1 T A 11: 34,710,713 (GRCm39) N345I probably damaging Het
St8sia2 T A 7: 73,626,441 (GRCm39) R42S possibly damaging Het
Syt9 G T 7: 107,035,717 (GRCm39) V245F possibly damaging Het
Tbpl2 T A 2: 23,984,898 (GRCm39) N82I possibly damaging Het
Tcerg1 T A 18: 42,686,530 (GRCm39) Y696N probably damaging Het
Thsd7b A G 1: 129,595,655 (GRCm39) T492A probably benign Het
Timm13 A C 10: 80,736,135 (GRCm39) probably benign Het
Trdmt1 T A 2: 13,524,870 (GRCm39) Q195L probably benign Het
Ttc27 T A 17: 75,165,086 (GRCm39) V764D probably damaging Het
Ttc39d C A 17: 80,524,076 (GRCm39) S245* probably null Het
Ttc41 A G 10: 86,567,023 (GRCm39) E563G probably benign Het
Ttc41 A T 10: 86,569,571 (GRCm39) T650S probably benign Het
U2surp A C 9: 95,358,210 (GRCm39) L723R probably damaging Het
Ubqln3 G A 7: 103,791,524 (GRCm39) Q189* probably null Het
Vezf1 A G 11: 87,972,326 (GRCm39) N229S probably damaging Het
Vmn2r79 T A 7: 86,686,365 (GRCm39) M582K probably benign Het
Zfp518a A G 19: 40,902,567 (GRCm39) D832G probably benign Het
Other mutations in Zfyve28
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00497:Zfyve28 APN 5 34,400,539 (GRCm39) missense probably damaging 0.98
IGL02201:Zfyve28 APN 5 34,400,549 (GRCm39) missense probably damaging 1.00
PIT4418001:Zfyve28 UTSW 5 34,390,721 (GRCm39) missense probably damaging 1.00
R0499:Zfyve28 UTSW 5 34,389,550 (GRCm39) missense possibly damaging 0.65
R1226:Zfyve28 UTSW 5 34,374,408 (GRCm39) missense probably benign 0.00
R1290:Zfyve28 UTSW 5 34,356,145 (GRCm39) missense probably benign 0.00
R1351:Zfyve28 UTSW 5 34,389,549 (GRCm39) missense probably damaging 1.00
R1418:Zfyve28 UTSW 5 34,374,590 (GRCm39) missense probably damaging 0.99
R2062:Zfyve28 UTSW 5 34,391,681 (GRCm39) missense probably null 0.73
R2212:Zfyve28 UTSW 5 34,357,028 (GRCm39) missense probably benign 0.02
R2443:Zfyve28 UTSW 5 34,374,238 (GRCm39) missense possibly damaging 0.64
R2851:Zfyve28 UTSW 5 34,354,006 (GRCm39) missense probably damaging 1.00
R2852:Zfyve28 UTSW 5 34,354,006 (GRCm39) missense probably damaging 1.00
R3412:Zfyve28 UTSW 5 34,357,028 (GRCm39) missense probably benign 0.02
R3413:Zfyve28 UTSW 5 34,357,028 (GRCm39) missense probably benign 0.02
R3694:Zfyve28 UTSW 5 34,374,812 (GRCm39) missense probably damaging 1.00
R4645:Zfyve28 UTSW 5 34,379,787 (GRCm39) intron probably benign
R4700:Zfyve28 UTSW 5 34,375,189 (GRCm39) missense probably damaging 1.00
R4938:Zfyve28 UTSW 5 34,390,698 (GRCm39) missense probably damaging 0.99
R5384:Zfyve28 UTSW 5 34,374,311 (GRCm39) missense probably damaging 1.00
R5908:Zfyve28 UTSW 5 34,374,214 (GRCm39) missense possibly damaging 0.62
R5936:Zfyve28 UTSW 5 34,382,332 (GRCm39) missense probably damaging 1.00
R6862:Zfyve28 UTSW 5 34,445,449 (GRCm39) missense probably benign 0.10
R7172:Zfyve28 UTSW 5 34,391,753 (GRCm39) missense probably benign 0.42
R7243:Zfyve28 UTSW 5 34,356,219 (GRCm39) missense probably damaging 1.00
R7366:Zfyve28 UTSW 5 34,389,571 (GRCm39) missense probably damaging 1.00
R7598:Zfyve28 UTSW 5 34,393,461 (GRCm39) missense probably damaging 1.00
R7654:Zfyve28 UTSW 5 34,400,539 (GRCm39) missense probably damaging 1.00
R7752:Zfyve28 UTSW 5 34,382,326 (GRCm39) missense probably damaging 1.00
R7861:Zfyve28 UTSW 5 34,374,487 (GRCm39) missense probably damaging 1.00
R7878:Zfyve28 UTSW 5 34,356,999 (GRCm39) missense probably damaging 1.00
R7901:Zfyve28 UTSW 5 34,382,326 (GRCm39) missense probably damaging 1.00
R8116:Zfyve28 UTSW 5 34,374,944 (GRCm39) missense probably damaging 0.96
R8483:Zfyve28 UTSW 5 34,393,480 (GRCm39) missense possibly damaging 0.67
R8799:Zfyve28 UTSW 5 34,390,670 (GRCm39) missense probably damaging 1.00
R8883:Zfyve28 UTSW 5 34,375,211 (GRCm39) critical splice acceptor site probably null
R8912:Zfyve28 UTSW 5 34,374,655 (GRCm39) missense probably benign 0.01
R9179:Zfyve28 UTSW 5 34,382,376 (GRCm39) missense probably benign 0.01
R9228:Zfyve28 UTSW 5 34,374,788 (GRCm39) missense probably benign
R9381:Zfyve28 UTSW 5 34,373,932 (GRCm39) missense probably benign 0.09
R9432:Zfyve28 UTSW 5 34,400,633 (GRCm39) missense possibly damaging 0.92
R9509:Zfyve28 UTSW 5 34,354,892 (GRCm39) missense probably benign 0.36
Predicted Primers PCR Primer
(F):5'- AAACCAAACTGGGGTGTGTG -3'
(R):5'- GGTAAGAAGCTTTCATCCTTTCC -3'

Sequencing Primer
(F):5'- CAAACTGGGGTGTGTGGTTGC -3'
(R):5'- AAGAAGCTTTCATCCTTTCCTATCTC -3'
Posted On 2018-03-15