Mutagenetix > Incidental Mutation

Incidental Mutation 'R6267:Garnl3'

507048

Institutional Source

Beutler Lab

Gene Symbol

Garnl3

Ensembl Gene

ENSMUSG00000038860

Gene Name

GTPase activating RANGAP domain-like 3

Synonyms

MMRRC Submission

044405-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.119) question?

Stock #

R6267 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

32876236-33021666 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 32994892 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 39 (D39G)

Ref Sequence

ENSEMBL: ENSMUSP00000141523 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000124000] [ENSMUST00000127509] [ENSMUST00000133135] [ENSMUST00000137381]

AlphaFold

Q3V0G7

Predicted Effect

probably benign
Transcript: ENSMUST00000124000
AA Change: D79G

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000123601
Gene: ENSMUSG00000038860
AA Change: D79G

Domain	Start	End	E-Value	Type
low complexity region	6	24	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000127509
AA Change: D39G

PolyPhen 2 Score 0.203 (Sensitivity: 0.92; Specificity: 0.88)

Predicted Effect

probably benign
Transcript: ENSMUST00000133135
AA Change: D39G

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

Predicted Effect

probably benign
Transcript: ENSMUST00000137381
AA Change: D39G

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000139778

Coding Region Coverage

1x: 99.9%
3x: 99.7%
10x: 98.6%
20x: 96.4%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 84 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4933427D14Rik	T	C	11: 72,086,580 (GRCm39)	K277R	probably damaging	Het
Aatf	T	C	11: 84,363,926 (GRCm39)	Y267C	probably benign	Het
Abi3bp	A	G	16: 56,414,860 (GRCm39)	T341A	probably damaging	Het
Acer2	T	C	4: 86,792,823 (GRCm39)	F33S	probably damaging	Het
Actr1b	A	G	1: 36,740,244 (GRCm39)	V299A	possibly damaging	Het
Ampd3	T	A	7: 110,390,387 (GRCm39)		probably null	Het
Atm	A	C	9: 53,355,300 (GRCm39)	I2898R	probably damaging	Het
Bpifb6	G	C	2: 153,748,812 (GRCm39)	K269N	possibly damaging	Het
Cacna1c	T	C	6: 118,575,684 (GRCm39)	E1927G	possibly damaging	Het
Cacna1c	T	A	6: 118,629,675 (GRCm39)	T1249S	probably benign	Het
Cars2	TCCCC	TCCC	8: 11,579,599 (GRCm39)		probably null	Het
Cbll1	A	G	12: 31,537,507 (GRCm39)	V415A	probably benign	Het
Cd300lf	C	T	11: 115,015,195 (GRCm39)	V132I	probably benign	Het
Chd2	T	C	7: 73,113,419 (GRCm39)	E1187G	probably damaging	Het
Cntrl	T	C	2: 35,019,805 (GRCm39)	L544P	probably damaging	Het
Cryga	A	C	1: 65,142,169 (GRCm39)	S75A	probably benign	Het
Dcbld1	T	A	10: 52,195,576 (GRCm39)	Y261*	probably null	Het
Ddx11	G	A	17: 66,457,724 (GRCm39)		probably null	Het
Dgke	C	T	11: 88,931,575 (GRCm39)	V560I	probably benign	Het
Dst	A	C	1: 34,267,753 (GRCm39)	D5065A	probably damaging	Het
Dusp16	C	A	6: 134,697,456 (GRCm39)		probably null	Het
Eif4enif1	T	A	11: 3,177,793 (GRCm39)	V395E	probably damaging	Het
Enox1	A	G	14: 77,815,204 (GRCm39)	T121A	probably damaging	Het
Enpp4	G	T	17: 44,413,371 (GRCm39)	N54K	probably benign	Het
Erc2	A	T	14: 27,802,112 (GRCm39)	K764M	probably damaging	Het
Ercc6	G	T	14: 32,248,360 (GRCm39)	E304*	probably null	Het
Fam117a	T	A	11: 95,254,971 (GRCm39)	C115S	possibly damaging	Het
Fcrl5	G	A	3: 87,355,631 (GRCm39)	G448E	probably damaging	Het
Galntl5	T	C	5: 25,391,163 (GRCm39)	S21P	probably benign	Het
Gm14295	C	T	2: 176,500,782 (GRCm39)	Q91*	probably null	Het
Grb10	T	A	11: 11,920,639 (GRCm39)		probably benign	Het
Grip1	C	T	10: 119,911,369 (GRCm39)	Q696*	probably null	Het
Herc2	T	A	7: 55,802,914 (GRCm39)	C2112*	probably null	Het
Herc2	T	G	7: 55,854,466 (GRCm39)	L3797R	possibly damaging	Het
Ighm	T	C	12: 113,385,187 (GRCm39)	I258V	unknown	Het
Jarid2	T	A	13: 45,056,539 (GRCm39)	Y443N	possibly damaging	Het
Kif13b	A	G	14: 64,976,083 (GRCm39)	Y466C	probably damaging	Het
Krtap4-6	T	A	11: 99,556,245 (GRCm39)	R161*	probably null	Het
Lingo4	G	A	3: 94,310,697 (GRCm39)	G545E	probably benign	Het
Lmo2	T	G	2: 103,800,946 (GRCm39)	V39G	possibly damaging	Het
Loricrin	C	A	3: 91,989,119 (GRCm39)	G56*	probably null	Het
Lrfn1	A	G	7: 28,159,169 (GRCm39)	R363G	probably benign	Het
Lrp1b	T	C	2: 40,547,537 (GRCm39)	D446G	probably benign	Het
Ltbp1	G	T	17: 75,312,984 (GRCm39)	G35V	possibly damaging	Het
Magel2	G	A	7: 62,028,427 (GRCm39)	V444M	probably damaging	Het
Mkx	A	T	18: 7,000,591 (GRCm39)		probably null	Het
Ms4a7	A	T	19: 11,310,659 (GRCm39)	I20N	possibly damaging	Het
Myo5b	A	G	18: 74,750,062 (GRCm39)	Y173C	probably damaging	Het
Nek1	C	T	8: 61,525,343 (GRCm39)	Q594*	probably null	Het
Nipbl	T	C	15: 8,330,379 (GRCm39)	M2349V	possibly damaging	Het
Nmnat2	A	T	1: 152,952,717 (GRCm39)	H102L	probably damaging	Het
Nup155	T	A	15: 8,182,639 (GRCm39)	C1201S	probably damaging	Het
Or2y8	C	A	11: 52,035,423 (GRCm39)	R311S	probably benign	Het
Or4a76	G	A	2: 89,460,975 (GRCm39)	T89I	probably damaging	Het
Or52x1	G	A	7: 104,852,599 (GRCm39)	T317I	probably damaging	Het
Osbpl1a	A	G	18: 12,952,560 (GRCm39)		probably null	Het
Pcnt	A	G	10: 76,221,632 (GRCm39)	V1998A	probably benign	Het
Pitpnc1	T	C	11: 107,117,092 (GRCm39)	H193R	probably damaging	Het
Pitpnm1	T	C	19: 4,160,522 (GRCm39)	L781P	probably damaging	Het
Prdm14	A	T	1: 13,189,160 (GRCm39)	C395S	probably damaging	Het
Prmt8	A	G	6: 127,688,767 (GRCm39)	I201T	probably damaging	Het
Pter	T	C	2: 12,983,352 (GRCm39)	V119A	probably damaging	Het
Rab11fip4	T	C	11: 79,581,655 (GRCm39)		probably null	Het
Rgs9	T	C	11: 109,159,813 (GRCm39)	N173S	probably benign	Het
Rorb	C	A	19: 18,955,221 (GRCm39)	V47L	possibly damaging	Het
Rtn4r	A	G	16: 17,969,046 (GRCm39)	Y158C	probably damaging	Het
Sdr16c5	C	T	4: 4,016,162 (GRCm39)	G88E	probably damaging	Het
Sfxn1	C	T	13: 54,247,899 (GRCm39)	T208I	probably benign	Het
Sgo2b	C	T	8: 64,380,827 (GRCm39)	M668I	probably benign	Het
Slc52a3	G	T	2: 151,849,529 (GRCm39)		probably null	Het
Smco1	A	T	16: 32,092,832 (GRCm39)	M168L	probably benign	Het
Spata31d1d	G	A	13: 59,876,278 (GRCm39)	T419I	possibly damaging	Het
Spata31d1e	T	C	13: 59,890,497 (GRCm39)	D441G	probably benign	Het
Spink5	T	C	18: 44,147,824 (GRCm39)	S857P	probably damaging	Het
Stk35	T	A	2: 129,652,808 (GRCm39)	Y436*	probably null	Het
Tmem225	T	A	9: 40,059,731 (GRCm39)	I37N	probably damaging	Het
Unkl	T	C	17: 25,450,839 (GRCm39)	*232R	probably null	Het
Usp16	A	G	16: 87,280,079 (GRCm39)	N813S	probably benign	Het
Vmn1r128	A	T	7: 21,084,221 (GRCm39)	*308C	probably null	Het
Vmn2r45	A	G	7: 8,475,207 (GRCm39)	V607A	probably benign	Het
Vmn2r63	A	T	7: 42,578,059 (GRCm39)		probably null	Het
Wnk4	A	T	11: 101,164,824 (GRCm39)	N718Y	probably damaging	Het
Zfp503	G	C	14: 22,035,868 (GRCm39)	Y349*	probably null	Het
Zfp990	T	A	4: 145,264,673 (GRCm39)	F557Y	possibly damaging	Het

Other mutations in Garnl3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01102:Garnl3	APN	2	32,896,828 (GRCm39)	missense	probably damaging	1.00
IGL01601:Garnl3	APN	2	32,887,701 (GRCm39)	nonsense	probably null
IGL01981:Garnl3	APN	2	32,887,741 (GRCm39)	missense	probably damaging	0.98
IGL02209:Garnl3	APN	2	32,975,942 (GRCm39)	missense	probably damaging	0.99
IGL02434:Garnl3	APN	2	32,944,217 (GRCm39)	missense	probably damaging	1.00
IGL02512:Garnl3	APN	2	32,921,150 (GRCm39)	missense	probably damaging	1.00
IGL02947:Garnl3	APN	2	32,936,606 (GRCm39)	missense	probably damaging	1.00
PIT4403001:Garnl3	UTSW	2	32,880,770 (GRCm39)	missense	probably damaging	1.00
R0123:Garnl3	UTSW	2	32,896,816 (GRCm39)	missense	possibly damaging	0.92
R0134:Garnl3	UTSW	2	32,896,816 (GRCm39)	missense	possibly damaging	0.92
R0225:Garnl3	UTSW	2	32,896,816 (GRCm39)	missense	possibly damaging	0.92
R0551:Garnl3	UTSW	2	32,906,750 (GRCm39)	missense	probably damaging	1.00
R0691:Garnl3	UTSW	2	32,975,919 (GRCm39)	missense	probably damaging	1.00
R0693:Garnl3	UTSW	2	32,975,919 (GRCm39)	missense	probably damaging	1.00
R0737:Garnl3	UTSW	2	32,880,654 (GRCm39)	missense	probably damaging	0.98
R1350:Garnl3	UTSW	2	32,942,226 (GRCm39)	missense	probably damaging	1.00
R1691:Garnl3	UTSW	2	32,887,675 (GRCm39)	nonsense	probably null
R1791:Garnl3	UTSW	2	32,924,139 (GRCm39)	missense	probably benign	0.02
R1938:Garnl3	UTSW	2	32,895,212 (GRCm39)	missense	probably damaging	0.99
R2100:Garnl3	UTSW	2	32,936,657 (GRCm39)	missense	probably benign	0.35
R2316:Garnl3	UTSW	2	32,895,164 (GRCm39)	missense	probably damaging	1.00
R2353:Garnl3	UTSW	2	32,954,046 (GRCm39)	missense	probably damaging	1.00
R3161:Garnl3	UTSW	2	32,924,723 (GRCm39)	missense	probably damaging	1.00
R3839:Garnl3	UTSW	2	32,879,558 (GRCm39)	missense	probably benign	0.00
R3847:Garnl3	UTSW	2	32,882,240 (GRCm39)	missense	probably benign
R4871:Garnl3	UTSW	2	32,977,100 (GRCm39)	start codon destroyed	probably null	0.77
R5682:Garnl3	UTSW	2	32,944,185 (GRCm39)	missense	probably damaging	1.00
R5811:Garnl3	UTSW	2	32,896,911 (GRCm39)	missense	probably damaging	0.99
R6502:Garnl3	UTSW	2	32,896,833 (GRCm39)	missense	possibly damaging	0.67
R6532:Garnl3	UTSW	2	32,921,131 (GRCm39)	missense	possibly damaging	0.87
R6639:Garnl3	UTSW	2	32,879,537 (GRCm39)	missense	possibly damaging	0.75
R6763:Garnl3	UTSW	2	32,944,208 (GRCm39)	missense	probably damaging	1.00
R6866:Garnl3	UTSW	2	32,892,785 (GRCm39)	splice site	probably null
R6913:Garnl3	UTSW	2	32,876,841 (GRCm39)	missense	possibly damaging	0.91
R7002:Garnl3	UTSW	2	32,944,205 (GRCm39)	missense	possibly damaging	0.65
R7168:Garnl3	UTSW	2	32,885,090 (GRCm39)	missense	probably damaging	1.00
R7341:Garnl3	UTSW	2	32,924,141 (GRCm39)	missense	probably damaging	1.00
R7746:Garnl3	UTSW	2	32,882,269 (GRCm39)	missense	probably damaging	1.00
R7919:Garnl3	UTSW	2	32,936,611 (GRCm39)	missense	probably benign	0.38
R8079:Garnl3	UTSW	2	32,908,511 (GRCm39)	critical splice donor site	probably null
R8087:Garnl3	UTSW	2	32,935,548 (GRCm39)	missense	probably benign	0.01
R8123:Garnl3	UTSW	2	32,994,950 (GRCm39)	missense	probably damaging	0.97
R8170:Garnl3	UTSW	2	32,905,235 (GRCm39)	missense	possibly damaging	0.88
R8347:Garnl3	UTSW	2	32,975,903 (GRCm39)	missense	probably damaging	1.00
R8418:Garnl3	UTSW	2	32,942,158 (GRCm39)	missense	possibly damaging	0.73
R8679:Garnl3	UTSW	2	32,916,106 (GRCm39)	missense	probably damaging	1.00
R8940:Garnl3	UTSW	2	32,895,241 (GRCm39)	critical splice acceptor site	probably null
R9081:Garnl3	UTSW	2	32,896,920 (GRCm39)	missense	possibly damaging	0.90
R9183:Garnl3	UTSW	2	32,895,080 (GRCm39)	missense	probably damaging	1.00
R9213:Garnl3	UTSW	2	32,895,080 (GRCm39)	missense	probably damaging	1.00
R9219:Garnl3	UTSW	2	32,975,898 (GRCm39)	missense	probably damaging	1.00
R9453:Garnl3	UTSW	2	32,893,881 (GRCm39)	missense	probably damaging	1.00
X0022:Garnl3	UTSW	2	32,912,680 (GRCm39)	missense	probably damaging	1.00
X0023:Garnl3	UTSW	2	32,916,161 (GRCm39)	missense	probably damaging	1.00
X0024:Garnl3	UTSW	2	32,895,191 (GRCm39)	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- TTTGGTTAAAGGAGATGCCCAG -3'
(R):5'- AAGGCTGTCGTCCTTAAGCTG -3'

Sequencing Primer
(F):5'- GATGCCCAGTGAAAACTGCCG -3'
(R):5'- GGCTGCCCTTATTGCTGAGTC -3'

Posted On

2018-03-15