Incidental Mutation 'R6267:Nipbl'
ID 507111
Institutional Source Beutler Lab
Gene Symbol Nipbl
Ensembl Gene ENSMUSG00000022141
Gene Name NIPBL cohesin loading factor
Synonyms 4921518A06Rik, 4933421G18Rik
MMRRC Submission 044405-MU
Accession Numbers
Essential gene? Probably essential (E-score: 0.962) question?
Stock # R6267 (G1)
Quality Score 225.009
Status Not validated
Chromosome 15
Chromosomal Location 8290617-8444463 bp(-) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) T to C at 8300895 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Methionine to Valine at position 2349 (M2349V)
Ref Sequence ENSEMBL: ENSMUSP00000059385 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000052965]
AlphaFold no structure available at present
Predicted Effect possibly damaging
Transcript: ENSMUST00000052965
AA Change: M2349V

PolyPhen 2 Score 0.456 (Sensitivity: 0.89; Specificity: 0.90)
SMART Domains Protein: ENSMUSP00000059385
Gene: ENSMUSG00000022141
AA Change: M2349V

DomainStartEndE-ValueType
low complexity region 22 41 N/A INTRINSIC
low complexity region 322 338 N/A INTRINSIC
low complexity region 367 376 N/A INTRINSIC
low complexity region 447 462 N/A INTRINSIC
low complexity region 473 490 N/A INTRINSIC
low complexity region 639 652 N/A INTRINSIC
low complexity region 1020 1037 N/A INTRINSIC
low complexity region 1081 1097 N/A INTRINSIC
low complexity region 1102 1107 N/A INTRINSIC
low complexity region 1114 1139 N/A INTRINSIC
low complexity region 1165 1176 N/A INTRINSIC
low complexity region 1389 1396 N/A INTRINSIC
low complexity region 1577 1586 N/A INTRINSIC
coiled coil region 1628 1656 N/A INTRINSIC
Pfam:Cohesin_HEAT 1788 1829 1.1e-14 PFAM
Pfam:Nipped-B_C 2269 2450 2.8e-68 PFAM
low complexity region 2477 2501 N/A INTRINSIC
low complexity region 2502 2512 N/A INTRINSIC
low complexity region 2538 2550 N/A INTRINSIC
low complexity region 2626 2632 N/A INTRINSIC
low complexity region 2660 2684 N/A INTRINSIC
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.7%
  • 10x: 98.6%
  • 20x: 96.4%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes the homolog of the Drosophila melanogaster Nipped-B gene product and fungal Scc2-type sister chromatid cohesion proteins. The Drosophila protein facilitates enhancer-promoter communication of remote enhancers and plays a role in developmental regulation. It is also homologous to a family of chromosomal adherins with broad roles in sister chromatid cohesion, chromosome condensation, and DNA repair. The human protein has a bipartite nuclear targeting sequence and a putative HEAT repeat. Condensins, cohesins and other complexes with chromosome-related functions also contain HEAT repeats. Mutations in this gene result in Cornelia de Lange syndrome, a disorder characterized by dysmorphic facial features, growth delay, limb reduction defects, and mental retardation. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]
PHENOTYPE: Nullizygous mice are embryonic lethal. Heterozygous null mice are growth-retarded and show various skeletal anomalies. Heterozygotes for a gene-trap allele are small and show craniofacial, heart, eye, hearing and behavioral defects, delayed bone maturation, reduced body fat, and postnatal mortality. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 84 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700014D04Rik T C 13: 59,742,683 (GRCm38) D441G probably benign Het
4933427D14Rik T C 11: 72,195,754 (GRCm38) K277R probably damaging Het
Aatf T C 11: 84,473,100 (GRCm38) Y267C probably benign Het
Abi3bp A G 16: 56,594,497 (GRCm38) T341A probably damaging Het
Acer2 T C 4: 86,874,586 (GRCm38) F33S probably damaging Het
Actr1b A G 1: 36,701,163 (GRCm38) V299A possibly damaging Het
Ampd3 T A 7: 110,791,180 (GRCm38) probably null Het
Atm A C 9: 53,444,000 (GRCm38) I2898R probably damaging Het
Bpifb6 G C 2: 153,906,892 (GRCm38) K269N possibly damaging Het
Cacna1c T C 6: 118,598,723 (GRCm38) E1927G possibly damaging Het
Cacna1c T A 6: 118,652,714 (GRCm38) T1249S probably benign Het
Cars2 TCCCC TCCC 8: 11,529,599 (GRCm38) probably null Het
Cbll1 A G 12: 31,487,508 (GRCm38) V415A probably benign Het
Cd300lf C T 11: 115,124,369 (GRCm38) V132I probably benign Het
Chd2 T C 7: 73,463,671 (GRCm38) E1187G probably damaging Het
Cntrl T C 2: 35,129,793 (GRCm38) L544P probably damaging Het
Cryga A C 1: 65,103,010 (GRCm38) S75A probably benign Het
Dcbld1 T A 10: 52,319,480 (GRCm38) Y261* probably null Het
Ddx11 G A 17: 66,150,729 (GRCm38) probably null Het
Dgke C T 11: 89,040,749 (GRCm38) V560I probably benign Het
Dst A C 1: 34,228,672 (GRCm38) D5065A probably damaging Het
Dusp16 C A 6: 134,720,493 (GRCm38) probably null Het
Eif4enif1 T A 11: 3,227,793 (GRCm38) V395E probably damaging Het
Enox1 A G 14: 77,577,764 (GRCm38) T121A probably damaging Het
Enpp4 G T 17: 44,102,480 (GRCm38) N54K probably benign Het
Erc2 A T 14: 28,080,155 (GRCm38) K764M probably damaging Het
Ercc6 G T 14: 32,526,403 (GRCm38) E304* probably null Het
Fam117a T A 11: 95,364,145 (GRCm38) C115S possibly damaging Het
Fcrl5 G A 3: 87,448,324 (GRCm38) G448E probably damaging Het
Galntl5 T C 5: 25,186,165 (GRCm38) S21P probably benign Het
Garnl3 T C 2: 33,104,880 (GRCm38) D39G probably benign Het
Gm14295 C T 2: 176,808,989 (GRCm38) Q91* probably null Het
Grb10 T A 11: 11,970,639 (GRCm38) probably benign Het
Grip1 C T 10: 120,075,464 (GRCm38) Q696* probably null Het
Herc2 T G 7: 56,204,718 (GRCm38) L3797R possibly damaging Het
Herc2 T A 7: 56,153,166 (GRCm38) C2112* probably null Het
Ighm T C 12: 113,421,567 (GRCm38) I258V unknown Het
Jarid2 T A 13: 44,903,063 (GRCm38) Y443N possibly damaging Het
Kif13b A G 14: 64,738,634 (GRCm38) Y466C probably damaging Het
Krtap4-6 T A 11: 99,665,419 (GRCm38) R161* probably null Het
Lingo4 G A 3: 94,403,390 (GRCm38) G545E probably benign Het
Lmo2 T G 2: 103,970,601 (GRCm38) V39G possibly damaging Het
Lor C A 3: 92,081,812 (GRCm38) G56* probably null Het
Lrfn1 A G 7: 28,459,744 (GRCm38) R363G probably benign Het
Lrp1b T C 2: 40,657,525 (GRCm38) D446G probably benign Het
Ltbp1 G T 17: 75,005,989 (GRCm38) G35V possibly damaging Het
Magel2 G A 7: 62,378,679 (GRCm38) V444M probably damaging Het
Mkx A T 18: 7,000,591 (GRCm38) probably null Het
Ms4a7 A T 19: 11,333,295 (GRCm38) I20N possibly damaging Het
Myo5b A G 18: 74,616,991 (GRCm38) Y173C probably damaging Het
Nek1 C T 8: 61,072,309 (GRCm38) Q594* probably null Het
Nmnat2 A T 1: 153,076,971 (GRCm38) H102L probably damaging Het
Nup155 T A 15: 8,153,155 (GRCm38) C1201S probably damaging Het
Olfr1249 G A 2: 89,630,631 (GRCm38) T89I probably damaging Het
Olfr1373 C A 11: 52,144,596 (GRCm38) R311S probably benign Het
Olfr686 G A 7: 105,203,392 (GRCm38) T317I probably damaging Het
Osbpl1a A G 18: 12,819,503 (GRCm38) probably null Het
Pcnt A G 10: 76,385,798 (GRCm38) V1998A probably benign Het
Pitpnc1 T C 11: 107,226,266 (GRCm38) H193R probably damaging Het
Pitpnm1 T C 19: 4,110,522 (GRCm38) L781P probably damaging Het
Prdm14 A T 1: 13,118,936 (GRCm38) C395S probably damaging Het
Prmt8 A G 6: 127,711,804 (GRCm38) I201T probably damaging Het
Pter T C 2: 12,978,541 (GRCm38) V119A probably damaging Het
Rab11fip4 T C 11: 79,690,829 (GRCm38) probably null Het
Rgs9 T C 11: 109,268,987 (GRCm38) N173S probably benign Het
Rorb C A 19: 18,977,857 (GRCm38) V47L possibly damaging Het
Rtn4r A G 16: 18,151,182 (GRCm38) Y158C probably damaging Het
Sdr16c5 C T 4: 4,016,162 (GRCm38) G88E probably damaging Het
Sfxn1 C T 13: 54,093,880 (GRCm38) T208I probably benign Het
Sgo2b C T 8: 63,927,793 (GRCm38) M668I probably benign Het
Slc52a3 G T 2: 152,007,609 (GRCm38) probably null Het
Smco1 A T 16: 32,274,014 (GRCm38) M168L probably benign Het
Spata31d1d G A 13: 59,728,464 (GRCm38) T419I possibly damaging Het
Spink5 T C 18: 44,014,757 (GRCm38) S857P probably damaging Het
Stk35 T A 2: 129,810,888 (GRCm38) Y436* probably null Het
Tmem225 T A 9: 40,148,435 (GRCm38) I37N probably damaging Het
Unkl T C 17: 25,231,865 (GRCm38) *232R probably null Het
Usp16 A G 16: 87,483,191 (GRCm38) N813S probably benign Het
Vmn1r128 A T 7: 21,350,296 (GRCm38) *308C probably null Het
Vmn2r45 A G 7: 8,472,208 (GRCm38) V607A probably benign Het
Vmn2r63 A T 7: 42,928,635 (GRCm38) probably null Het
Wnk4 A T 11: 101,273,998 (GRCm38) N718Y probably damaging Het
Zfp503 G C 14: 21,985,800 (GRCm38) Y349* probably null Het
Zfp990 T A 4: 145,538,103 (GRCm38) F557Y possibly damaging Het
Other mutations in Nipbl
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00417:Nipbl APN 15 8,366,673 (GRCm38) missense probably damaging 0.98
IGL00712:Nipbl APN 15 8,369,474 (GRCm38) missense probably damaging 0.97
IGL00789:Nipbl APN 15 8,296,869 (GRCm38) missense probably damaging 1.00
IGL01025:Nipbl APN 15 8,350,455 (GRCm38) missense possibly damaging 0.46
IGL01087:Nipbl APN 15 8,350,497 (GRCm38) missense possibly damaging 0.67
IGL01474:Nipbl APN 15 8,311,209 (GRCm38) missense possibly damaging 0.63
IGL01537:Nipbl APN 15 8,350,539 (GRCm38) missense probably benign
IGL01723:Nipbl APN 15 8,335,071 (GRCm38) missense possibly damaging 0.71
IGL01749:Nipbl APN 15 8,361,821 (GRCm38) missense probably benign 0.13
IGL02398:Nipbl APN 15 8,327,090 (GRCm38) missense probably damaging 1.00
IGL02437:Nipbl APN 15 8,359,074 (GRCm38) missense probably damaging 1.00
IGL02450:Nipbl APN 15 8,343,574 (GRCm38) missense probably damaging 0.99
IGL02477:Nipbl APN 15 8,323,647 (GRCm38) splice site probably null
IGL02547:Nipbl APN 15 8,351,598 (GRCm38) missense probably benign
IGL02678:Nipbl APN 15 8,351,110 (GRCm38) missense possibly damaging 0.92
IGL02679:Nipbl APN 15 8,295,553 (GRCm38) missense probably benign 0.34
IGL03003:Nipbl APN 15 8,350,314 (GRCm38) missense probably damaging 1.00
IGL03117:Nipbl APN 15 8,332,452 (GRCm38) missense probably damaging 1.00
IGL03162:Nipbl APN 15 8,338,979 (GRCm38) missense probably benign 0.37
IGL03224:Nipbl APN 15 8,293,085 (GRCm38) missense probably damaging 0.98
IGL03339:Nipbl APN 15 8,350,876 (GRCm38) missense probably benign 0.12
R0346_Nipbl_297 UTSW 15 8,360,956 (GRCm38) missense probably damaging 0.99
R0347_Nipbl_476 UTSW 15 8,350,732 (GRCm38) missense probably benign
R3620_nipbl_616 UTSW 15 8,333,024 (GRCm38) missense probably damaging 0.99
R6388_Nipbl_651 UTSW 15 8,300,784 (GRCm38) missense probably damaging 0.99
R8441_Nipbl_224 UTSW 15 8,293,115 (GRCm38) missense probably benign 0.00
R0271:Nipbl UTSW 15 8,361,737 (GRCm38) missense possibly damaging 0.76
R0346:Nipbl UTSW 15 8,360,956 (GRCm38) missense probably damaging 0.99
R0347:Nipbl UTSW 15 8,350,732 (GRCm38) missense probably benign
R0422:Nipbl UTSW 15 8,351,628 (GRCm38) missense probably benign
R0486:Nipbl UTSW 15 8,338,870 (GRCm38) splice site probably benign
R0652:Nipbl UTSW 15 8,303,480 (GRCm38) missense probably benign 0.23
R0667:Nipbl UTSW 15 8,361,004 (GRCm38) missense possibly damaging 0.86
R0689:Nipbl UTSW 15 8,293,078 (GRCm38) splice site probably null
R0726:Nipbl UTSW 15 8,351,555 (GRCm38) missense probably benign
R0881:Nipbl UTSW 15 8,307,612 (GRCm38) missense probably damaging 0.98
R0904:Nipbl UTSW 15 8,361,718 (GRCm38) missense probably benign
R0969:Nipbl UTSW 15 8,292,228 (GRCm38) missense probably damaging 1.00
R1401:Nipbl UTSW 15 8,372,173 (GRCm38) missense probably damaging 0.97
R1479:Nipbl UTSW 15 8,350,289 (GRCm38) missense probably benign 0.00
R1495:Nipbl UTSW 15 8,351,280 (GRCm38) missense probably benign 0.00
R1609:Nipbl UTSW 15 8,366,664 (GRCm38) missense probably damaging 1.00
R1679:Nipbl UTSW 15 8,302,912 (GRCm38) missense probably benign 0.31
R1756:Nipbl UTSW 15 8,338,551 (GRCm38) missense possibly damaging 0.91
R1778:Nipbl UTSW 15 8,319,488 (GRCm38) missense probably damaging 1.00
R1835:Nipbl UTSW 15 8,343,517 (GRCm38) missense possibly damaging 0.80
R1883:Nipbl UTSW 15 8,327,132 (GRCm38) missense probably damaging 1.00
R1914:Nipbl UTSW 15 8,343,630 (GRCm38) missense possibly damaging 0.93
R1915:Nipbl UTSW 15 8,343,630 (GRCm38) missense possibly damaging 0.93
R2030:Nipbl UTSW 15 8,350,287 (GRCm38) missense probably damaging 1.00
R2046:Nipbl UTSW 15 8,324,467 (GRCm38) missense probably benign 0.08
R2076:Nipbl UTSW 15 8,311,207 (GRCm38) missense probably benign 0.11
R2163:Nipbl UTSW 15 8,336,919 (GRCm38) missense probably damaging 0.99
R2170:Nipbl UTSW 15 8,293,218 (GRCm38) missense probably damaging 1.00
R2425:Nipbl UTSW 15 8,351,482 (GRCm38) missense probably benign 0.06
R2475:Nipbl UTSW 15 8,335,006 (GRCm38) missense probably benign 0.05
R2484:Nipbl UTSW 15 8,323,698 (GRCm38) missense probably damaging 0.99
R2970:Nipbl UTSW 15 8,311,239 (GRCm38) missense probably damaging 1.00
R3116:Nipbl UTSW 15 8,343,592 (GRCm38) missense probably benign 0.00
R3620:Nipbl UTSW 15 8,333,024 (GRCm38) missense probably damaging 0.99
R3725:Nipbl UTSW 15 8,295,661 (GRCm38) missense probably damaging 0.97
R3745:Nipbl UTSW 15 8,358,874 (GRCm38) missense probably benign
R3902:Nipbl UTSW 15 8,350,246 (GRCm38) missense possibly damaging 0.94
R3960:Nipbl UTSW 15 8,350,534 (GRCm38) missense probably benign
R4164:Nipbl UTSW 15 8,338,934 (GRCm38) missense probably benign 0.24
R4246:Nipbl UTSW 15 8,332,432 (GRCm38) missense probably damaging 1.00
R4381:Nipbl UTSW 15 8,359,206 (GRCm38) missense probably benign 0.00
R4394:Nipbl UTSW 15 8,361,861 (GRCm38) missense probably benign 0.00
R4439:Nipbl UTSW 15 8,338,724 (GRCm38) missense probably damaging 0.98
R4440:Nipbl UTSW 15 8,366,658 (GRCm38) missense probably damaging 0.98
R4441:Nipbl UTSW 15 8,366,658 (GRCm38) missense probably damaging 0.98
R4672:Nipbl UTSW 15 8,302,984 (GRCm38) missense probably damaging 1.00
R4749:Nipbl UTSW 15 8,365,829 (GRCm38) missense possibly damaging 0.95
R5300:Nipbl UTSW 15 8,351,497 (GRCm38) missense probably benign
R5428:Nipbl UTSW 15 8,330,296 (GRCm38) missense probably benign 0.00
R5641:Nipbl UTSW 15 8,366,712 (GRCm38) missense possibly damaging 0.93
R5643:Nipbl UTSW 15 8,358,907 (GRCm38) missense probably benign
R5644:Nipbl UTSW 15 8,358,907 (GRCm38) missense probably benign
R5681:Nipbl UTSW 15 8,301,382 (GRCm38) missense probably benign 0.22
R5741:Nipbl UTSW 15 8,324,649 (GRCm38) missense possibly damaging 0.47
R5899:Nipbl UTSW 15 8,334,844 (GRCm38) splice site probably null
R5970:Nipbl UTSW 15 8,296,818 (GRCm38) missense probably benign 0.27
R6041:Nipbl UTSW 15 8,324,264 (GRCm38) missense probably damaging 1.00
R6059:Nipbl UTSW 15 8,295,568 (GRCm38) missense probably damaging 1.00
R6213:Nipbl UTSW 15 8,334,906 (GRCm38) missense probably damaging 1.00
R6216:Nipbl UTSW 15 8,318,383 (GRCm38) missense probably damaging 0.99
R6236:Nipbl UTSW 15 8,324,580 (GRCm38) missense possibly damaging 0.88
R6296:Nipbl UTSW 15 8,300,895 (GRCm38) missense possibly damaging 0.46
R6388:Nipbl UTSW 15 8,300,784 (GRCm38) missense probably damaging 0.99
R6427:Nipbl UTSW 15 8,351,565 (GRCm38) missense probably benign
R6707:Nipbl UTSW 15 8,324,559 (GRCm38) missense probably benign 0.01
R6731:Nipbl UTSW 15 8,322,590 (GRCm38) missense probably damaging 1.00
R6921:Nipbl UTSW 15 8,303,485 (GRCm38) missense probably benign 0.28
R7239:Nipbl UTSW 15 8,292,135 (GRCm38) critical splice donor site probably null
R7346:Nipbl UTSW 15 8,343,606 (GRCm38) missense possibly damaging 0.94
R7485:Nipbl UTSW 15 8,330,295 (GRCm38) missense probably benign 0.01
R7486:Nipbl UTSW 15 8,295,636 (GRCm38) missense probably benign 0.25
R7598:Nipbl UTSW 15 8,343,493 (GRCm38) missense probably benign 0.24
R7609:Nipbl UTSW 15 8,305,872 (GRCm38) missense probably benign 0.27
R7674:Nipbl UTSW 15 8,293,101 (GRCm38) missense probably benign 0.15
R7706:Nipbl UTSW 15 8,351,526 (GRCm38) missense probably benign 0.01
R7760:Nipbl UTSW 15 8,358,702 (GRCm38) missense probably damaging 1.00
R7766:Nipbl UTSW 15 8,296,849 (GRCm38) missense probably benign 0.45
R7825:Nipbl UTSW 15 8,291,487 (GRCm38) missense probably damaging 1.00
R7862:Nipbl UTSW 15 8,325,752 (GRCm38) missense probably benign 0.06
R7958:Nipbl UTSW 15 8,311,258 (GRCm38) missense possibly damaging 0.91
R8077:Nipbl UTSW 15 8,311,250 (GRCm38) missense possibly damaging 0.49
R8119:Nipbl UTSW 15 8,359,212 (GRCm38) missense probably benign 0.22
R8355:Nipbl UTSW 15 8,335,044 (GRCm38) missense probably damaging 0.98
R8441:Nipbl UTSW 15 8,293,115 (GRCm38) missense probably benign 0.00
R8455:Nipbl UTSW 15 8,335,044 (GRCm38) missense probably damaging 0.98
R8717:Nipbl UTSW 15 8,338,741 (GRCm38) missense probably benign
R8739:Nipbl UTSW 15 8,303,420 (GRCm38) missense probably benign 0.08
R8854:Nipbl UTSW 15 8,300,726 (GRCm38) missense probably damaging 1.00
R8887:Nipbl UTSW 15 8,361,787 (GRCm38) missense probably damaging 1.00
R8942:Nipbl UTSW 15 8,351,620 (GRCm38) missense probably benign
R8991:Nipbl UTSW 15 8,291,513 (GRCm38) missense probably damaging 1.00
R9008:Nipbl UTSW 15 8,327,124 (GRCm38) missense probably damaging 1.00
R9070:Nipbl UTSW 15 8,338,731 (GRCm38) missense possibly damaging 0.82
R9116:Nipbl UTSW 15 8,350,856 (GRCm38) missense probably benign 0.00
R9622:Nipbl UTSW 15 8,336,889 (GRCm38) missense probably benign 0.27
R9778:Nipbl UTSW 15 8,291,548 (GRCm38) missense probably benign 0.10
RF020:Nipbl UTSW 15 8,358,934 (GRCm38) missense probably damaging 0.98
X0022:Nipbl UTSW 15 8,351,715 (GRCm38) missense probably benign 0.05
X0027:Nipbl UTSW 15 8,323,537 (GRCm38) missense probably damaging 1.00
Z1088:Nipbl UTSW 15 8,307,882 (GRCm38) missense probably damaging 1.00
Z1176:Nipbl UTSW 15 8,338,699 (GRCm38) missense possibly damaging 0.88
Z1177:Nipbl UTSW 15 8,338,680 (GRCm38) critical splice donor site probably null
Z1177:Nipbl UTSW 15 8,336,952 (GRCm38) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- AAGAAAGGCGCGTCTGTGTTG -3'
(R):5'- GTGACAGTTCAGGAGGCATG -3'

Sequencing Primer
(F):5'- CTGTGTTGGCGGTTCCC -3'
(R):5'- CAGACACTACTGTAACCTTGGTTAGC -3'
Posted On 2018-03-15