Mutagenetix > Incidental Mutation

Incidental Mutation 'R6269:Gdpd4'

507222

Institutional Source

Beutler Lab

Gene Symbol

Gdpd4

Ensembl Gene

ENSMUSG00000035582

Gene Name

glycerophosphodiester phosphodiesterase domain containing 4

Synonyms

MMRRC Submission

044440-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.065) question?

Stock #

R6269 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

97569162-97698870 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 97623669 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Glycine at position 314 (S314G)

Ref Sequence

ENSEMBL: ENSMUSP00000131960 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000041860] [ENSMUST00000170049]

AlphaFold

Q3TT99

Predicted Effect

probably damaging
Transcript: ENSMUST00000041860
AA Change: S314G

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000036772
Gene: ENSMUSG00000035582
AA Change: S314G

Domain	Start	End	E-Value	Type
transmembrane domain	65	84	N/A	INTRINSIC
transmembrane domain	104	135	N/A	INTRINSIC
transmembrane domain	148	168	N/A	INTRINSIC
transmembrane domain	183	205	N/A	INTRINSIC
transmembrane domain	241	263	N/A	INTRINSIC
Pfam:GDPD	281	440	1.4e-19	PFAM
transmembrane domain	543	565	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000170049
AA Change: S314G

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000131960
Gene: ENSMUSG00000035582
AA Change: S314G

Domain	Start	End	E-Value	Type
transmembrane domain	65	84	N/A	INTRINSIC
transmembrane domain	104	135	N/A	INTRINSIC
transmembrane domain	148	168	N/A	INTRINSIC
transmembrane domain	183	205	N/A	INTRINSIC
transmembrane domain	241	263	N/A	INTRINSIC
Pfam:GDPD	281	439	3.4e-21	PFAM
transmembrane domain	543	565	N/A	INTRINSIC

Coding Region Coverage

1x: 99.9%
3x: 99.7%
10x: 98.6%
20x: 96.3%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 59 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aak1	T	A	6: 86,941,033 (GRCm39)	I609N	unknown	Het
Ano10	A	T	9: 122,090,308 (GRCm39)	I277N	probably damaging	Het
Ap2b1	A	G	11: 83,237,499 (GRCm39)	D483G	probably damaging	Het
As3mt	T	A	19: 46,708,391 (GRCm39)	F226Y	probably damaging	Het
Atp10a	G	A	7: 58,453,487 (GRCm39)	R855H	possibly damaging	Het
Bin3	T	A	14: 70,374,611 (GRCm39)	H213Q	probably benign	Het
Bora	T	C	14: 99,311,103 (GRCm39)	C512R	probably damaging	Het
Camk2b	T	A	11: 5,928,497 (GRCm39)	D414V	probably damaging	Het
Ccdc27	A	T	4: 154,122,179 (GRCm39)	L233Q	unknown	Het
Ccdc73	T	C	2: 104,737,978 (GRCm39)	S25P	probably damaging	Het
Cenpf	G	A	1: 189,392,117 (GRCm39)	H572Y	probably benign	Het
Chil4	A	G	3: 106,111,487 (GRCm39)	V209A	probably damaging	Het
Clstn1	T	C	4: 149,728,524 (GRCm39)	V650A	probably benign	Het
Cox6a2	T	A	7: 127,805,437 (GRCm39)	S11C	probably benign	Het
Csf1	T	C	3: 107,656,317 (GRCm39)	E238G	probably benign	Het
Cyp2c23	T	A	19: 44,017,626 (GRCm39)	M1L	unknown	Het
Cyp4a10	T	A	4: 115,381,509 (GRCm39)	M191K	probably damaging	Het
Cyp4a14	A	G	4: 115,348,328 (GRCm39)	V383A	possibly damaging	Het
D130052B06Rik	T	G	11: 33,573,916 (GRCm39)	V171G	possibly damaging	Het
Dlgap2	A	G	8: 14,872,369 (GRCm39)	T617A	probably benign	Het
Dyrk4	T	A	6: 126,863,690 (GRCm39)	I351F	probably damaging	Het
Epg5	T	C	18: 77,991,585 (GRCm39)	V94A	probably benign	Het
Fam111a	A	G	19: 12,565,807 (GRCm39)	T519A	probably benign	Het
Gm9758	T	A	5: 14,962,274 (GRCm39)	K111N	possibly damaging	Het
Gpr137b	A	T	13: 13,538,096 (GRCm39)	V285E	probably damaging	Het
Hyls1	G	A	9: 35,472,480 (GRCm39)	S312F	probably benign	Het
Itgal	T	A	7: 126,929,389 (GRCm39)	L1102Q	probably null	Het
Kctd19	T	A	8: 106,121,992 (GRCm39)	Y185F	possibly damaging	Het
Kif5b	A	G	18: 6,223,558 (GRCm39)	L317P	possibly damaging	Het
Klhl42	C	A	6: 146,993,805 (GRCm39)	A259E	probably damaging	Het
Lrrc2	A	G	9: 110,810,017 (GRCm39)	D351G	probably damaging	Het
Med12l	A	G	3: 59,135,243 (GRCm39)	E797G	probably damaging	Het
Mink1	A	G	11: 70,489,813 (GRCm39)	E63G	probably damaging	Het
Nek9	T	C	12: 85,379,103 (GRCm39)		probably null	Het
Or12e8	A	T	2: 87,677,218 (GRCm39)	H201L	possibly damaging	Het
Otx1	C	A	11: 21,947,037 (GRCm39)	A91S	probably damaging	Het
Parp6	G	A	9: 59,557,295 (GRCm39)	V627I	probably benign	Het
Pclo	C	T	5: 14,572,108 (GRCm39)	Q498*	probably null	Het
Pdlim5	T	C	3: 142,018,086 (GRCm39)	T170A	possibly damaging	Het
Pgap1	A	T	1: 54,587,167 (GRCm39)	Y136*	probably null	Het
Pgghg	T	A	7: 140,526,097 (GRCm39)	N563K	probably damaging	Het
Plxnb2	A	G	15: 89,044,916 (GRCm39)	M1143T	probably benign	Het
Pnpla1	G	A	17: 29,100,342 (GRCm39)	G403E	probably benign	Het
Prc1	G	A	7: 79,959,175 (GRCm39)	R381Q	probably damaging	Het
Psph	A	T	5: 129,843,529 (GRCm39)	I175N	probably damaging	Het
Rbbp8nl	T	A	2: 179,923,305 (GRCm39)	K131*	probably null	Het
Rsf1	GGCG	GGCGACGGCCGCG	7: 97,229,113 (GRCm39)		probably benign	Homo
Sde2	G	A	1: 180,683,371 (GRCm39)	V42I	probably benign	Het
Slc25a3	G	A	10: 90,952,963 (GRCm39)	R314*	probably null	Het
Spag9	A	G	11: 93,935,333 (GRCm39)	N48S	probably benign	Het
Srp54b	T	C	12: 55,302,757 (GRCm39)	M351T	possibly damaging	Het
Tasor2	C	T	13: 3,631,891 (GRCm39)	R870H	possibly damaging	Het
Tcaf2	A	G	6: 42,604,342 (GRCm39)	L679P	probably damaging	Het
Tnrc6b	T	A	15: 80,764,944 (GRCm39)	N815K	probably benign	Het
Usp17la	A	T	7: 104,509,557 (GRCm39)	Q54L	possibly damaging	Het
Vmn2r92	T	A	17: 18,387,036 (GRCm39)	I125K	probably benign	Het
Xrra1	T	C	7: 99,566,679 (GRCm39)	Y732H	probably damaging	Het
Zfp131	A	G	13: 120,227,941 (GRCm39)	S603P	possibly damaging	Het
Zfp28	G	T	7: 6,396,612 (GRCm39)	S349I	probably benign	Het

Other mutations in Gdpd4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00517:Gdpd4	APN	7	97,653,478 (GRCm39)	missense	probably damaging	1.00
IGL01292:Gdpd4	APN	7	97,664,161 (GRCm39)	splice site	probably benign
IGL01317:Gdpd4	APN	7	97,647,465 (GRCm39)	missense	possibly damaging	0.74
IGL02678:Gdpd4	APN	7	97,623,584 (GRCm39)	splice site	probably benign
IGL02822:Gdpd4	APN	7	97,621,131 (GRCm39)	missense	possibly damaging	0.82
IGL02987:Gdpd4	APN	7	97,610,758 (GRCm39)	splice site	probably benign
R0022:Gdpd4	UTSW	7	97,632,082 (GRCm39)	missense	probably damaging	1.00
R0331:Gdpd4	UTSW	7	97,622,215 (GRCm39)	missense	probably benign	0.11
R0882:Gdpd4	UTSW	7	97,615,505 (GRCm39)	missense	probably damaging	1.00
R1425:Gdpd4	UTSW	7	97,623,219 (GRCm39)	missense	probably benign	0.03
R1469:Gdpd4	UTSW	7	97,623,673 (GRCm39)	splice site	probably null
R1469:Gdpd4	UTSW	7	97,623,673 (GRCm39)	splice site	probably null
R1870:Gdpd4	UTSW	7	97,622,162 (GRCm39)	missense	probably benign	0.00
R4747:Gdpd4	UTSW	7	97,610,840 (GRCm39)	missense	possibly damaging	0.80
R5017:Gdpd4	UTSW	7	97,653,482 (GRCm39)	nonsense	probably null
R5208:Gdpd4	UTSW	7	97,664,118 (GRCm39)	missense	probably benign	0.11
R5290:Gdpd4	UTSW	7	97,615,543 (GRCm39)	missense	possibly damaging	0.94
R5398:Gdpd4	UTSW	7	97,621,185 (GRCm39)	missense	probably benign	0.00
R5605:Gdpd4	UTSW	7	97,655,507 (GRCm39)	missense	probably benign	0.41
R5715:Gdpd4	UTSW	7	97,610,804 (GRCm39)	missense	probably benign	0.00
R5990:Gdpd4	UTSW	7	97,690,137 (GRCm39)	missense	probably benign	0.00
R6314:Gdpd4	UTSW	7	97,623,160 (GRCm39)	missense	probably damaging	0.98
R6817:Gdpd4	UTSW	7	97,607,037 (GRCm39)	missense	probably benign	0.00
R6884:Gdpd4	UTSW	7	97,621,382 (GRCm39)	missense	probably damaging	1.00
R7054:Gdpd4	UTSW	7	97,623,136 (GRCm39)	missense	probably damaging	0.99
R7575:Gdpd4	UTSW	7	97,647,448 (GRCm39)	missense	probably benign	0.00
R7582:Gdpd4	UTSW	7	97,607,012 (GRCm39)	critical splice acceptor site	probably null
R7694:Gdpd4	UTSW	7	97,621,146 (GRCm39)	missense	probably benign	0.24
R7867:Gdpd4	UTSW	7	97,623,185 (GRCm39)	nonsense	probably null
R8145:Gdpd4	UTSW	7	97,690,077 (GRCm39)	missense	probably benign	0.00
R8169:Gdpd4	UTSW	7	97,621,335 (GRCm39)	missense	probably benign	0.03
R8692:Gdpd4	UTSW	7	97,690,140 (GRCm39)	missense	probably benign	0.00
R9211:Gdpd4	UTSW	7	97,615,466 (GRCm39)	missense	possibly damaging	0.74
R9286:Gdpd4	UTSW	7	97,647,639 (GRCm39)	missense	probably damaging	1.00
R9417:Gdpd4	UTSW	7	97,607,074 (GRCm39)	missense	probably benign	0.00
R9529:Gdpd4	UTSW	7	97,610,793 (GRCm39)	missense	possibly damaging	0.94
R9563:Gdpd4	UTSW	7	97,649,369 (GRCm39)	missense	probably damaging	1.00
Z1088:Gdpd4	UTSW	7	97,615,516 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- AAGCCCTTTCATTCCCAGGC -3'
(R):5'- GGAAAACCACTTGAATTGCATG -3'

Sequencing Primer
(F):5'- GCTCTATGCCTACCACAAAAGAAATG -3'
(R):5'- TGTGAGCTTTTGGTAAAGAAGAC -3'

Posted On

2018-03-15