Incidental Mutation 'R6275:Rapgefl1'
ID507589
Institutional Source Beutler Lab
Gene Symbol Rapgefl1
Ensembl Gene ENSMUSG00000038020
Gene NameRap guanine nucleotide exchange factor (GEF)-like 1
Synonyms
MMRRC Submission
Accession Numbers
Is this an essential gene? Probably non essential (E-score: 0.175) question?
Stock #R6275 (G1)
Quality Score225.009
Status Validated
Chromosome11
Chromosomal Location98836785-98853697 bp(+) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) T to A at 98851120 bp
ZygosityHeterozygous
Amino Acid Change Tyrosine to Asparagine at position 637 (Y637N)
Ref Sequence ENSEMBL: ENSMUSP00000103103 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000107479]
Predicted Effect noncoding transcript
Transcript: ENSMUST00000037640
Predicted Effect probably damaging
Transcript: ENSMUST00000107479
AA Change: Y637N

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000103103
Gene: ENSMUSG00000038020
AA Change: Y637N

DomainStartEndE-ValueType
low complexity region 22 49 N/A INTRINSIC
low complexity region 50 65 N/A INTRINSIC
low complexity region 70 100 N/A INTRINSIC
low complexity region 108 133 N/A INTRINSIC
low complexity region 169 180 N/A INTRINSIC
RasGEF 420 661 2.39e-84 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000139889
Meta Mutation Damage Score 0.5830 question?
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.7%
  • 10x: 98.3%
  • 20x: 95.4%
Validation Efficiency 98% (56/57)
Allele List at MGI
Other mutations in this stock
Total: 57 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4932415D10Rik T C 10: 82,285,368 D3936G probably damaging Het
Abca7 T A 10: 79,997,791 L30H probably damaging Het
Abcb6 T C 1: 75,172,551 probably null Het
Acsbg1 T A 9: 54,609,772 M586L probably benign Het
Ano6 A T 15: 95,913,433 Y159F probably damaging Het
C1ql1 A G 11: 102,939,749 I254T probably damaging Het
Ccdc81 T C 7: 89,882,311 D318G possibly damaging Het
Ccr7 C T 11: 99,145,663 M144I probably damaging Het
Cdca3 C T 6: 124,832,664 probably null Het
Ces1h A T 8: 93,372,646 L93I probably benign Het
Cntfr T C 4: 41,663,216 D197G possibly damaging Het
Cyp2d12 C A 15: 82,556,658 P126T probably benign Het
Dnah10 A G 5: 124,785,184 T2225A probably damaging Het
Edrf1 A T 7: 133,667,582 N1147Y possibly damaging Het
Ermap C T 4: 119,178,550 V414M probably damaging Het
Fam13a A G 6: 58,954,257 I446T probably damaging Het
Fgfbp3 T C 19: 36,918,753 H155R possibly damaging Het
Folr1 T A 7: 101,859,535 N61I probably damaging Het
Fsip1 T C 2: 118,205,102 I431V probably benign Het
Gm5039 T C 12: 88,321,225 D86G possibly damaging Het
Gm5493 A T 17: 22,750,070 E74D probably benign Het
Gm6803 T C 12: 88,018,485 N96S probably benign Het
H2-Oa A G 17: 34,094,566 D197G probably benign Het
Hps1 T C 19: 42,769,607 E169G probably null Het
Il17rc A T 6: 113,480,347 M372L probably benign Het
Itga10 A G 3: 96,658,185 S1042G probably benign Het
Jchain A T 5: 88,521,353 V147E probably damaging Het
Laptm4b A G 15: 34,283,327 T211A probably benign Het
Mal2 T C 15: 54,571,639 probably null Het
Mov10l1 T A 15: 89,026,620 I1071N probably damaging Het
Mpp2 T A 11: 102,060,969 Y401F probably damaging Het
Myh15 A G 16: 49,145,247 T1172A probably benign Het
Olfr635 T A 7: 103,979,974 S261T probably damaging Het
Pcnx G T 12: 81,918,607 S516I probably benign Het
Pidd1 C T 7: 141,439,795 A685T probably damaging Het
Psg28 A C 7: 18,430,440 Y116D probably damaging Het
Psmd11 T C 11: 80,438,632 probably benign Het
Rbm25 T A 12: 83,644,432 M66K probably damaging Het
Rnf38 T A 4: 44,152,408 H52L probably benign Het
Rsf1 CGGCGGCGG CGGCGGCGGTGGCGGCGG 7: 97,579,923 probably benign Het
Sec62 A G 3: 30,809,836 Q89R probably damaging Het
Serpina6 T A 12: 103,648,720 Q289L probably benign Het
Sf3b2 A C 19: 5,283,650 I640S probably damaging Het
Slc13a2 CGTTATCTGT CGT 11: 78,403,480 probably benign Het
Slc26a11 T C 11: 119,359,299 F127L probably benign Het
Stac3 T A 10: 127,507,746 Y252* probably null Het
Stoml3 G A 3: 53,507,506 A240T probably damaging Het
Tanc1 A T 2: 59,843,510 H1653L probably benign Het
Tll1 A T 8: 64,051,367 L665* probably null Het
Tnr A C 1: 159,861,270 Q434P probably damaging Het
Tpgs1 C A 10: 79,675,520 D165E probably benign Het
Tsc2 A G 17: 24,600,420 V1185A probably benign Het
Tulp4 A G 17: 6,198,736 H203R probably damaging Het
Txnl4a T A 18: 80,218,765 M72K possibly damaging Het
Usp42 G A 5: 143,714,972 R1099W probably damaging Het
Zfp292 G A 4: 34,808,883 A1387V possibly damaging Het
Zfp994 A T 17: 22,199,991 L659* probably null Het
Other mutations in Rapgefl1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01487:Rapgefl1 APN 11 98847135 missense probably damaging 1.00
IGL03088:Rapgefl1 APN 11 98849232 missense probably damaging 1.00
IGL03048:Rapgefl1 UTSW 11 98837164 missense possibly damaging 0.96
R1807:Rapgefl1 UTSW 11 98845989 critical splice donor site probably null
R1862:Rapgefl1 UTSW 11 98842209 missense probably benign
R4078:Rapgefl1 UTSW 11 98849977 missense probably benign 0.34
R4079:Rapgefl1 UTSW 11 98849977 missense probably benign 0.34
R4869:Rapgefl1 UTSW 11 98851109 missense probably damaging 1.00
R5994:Rapgefl1 UTSW 11 98850160 missense probably benign 0.06
R6930:Rapgefl1 UTSW 11 98847121 missense probably damaging 1.00
R7138:Rapgefl1 UTSW 11 98847074 critical splice acceptor site probably null
R7432:Rapgefl1 UTSW 11 98851114 missense probably damaging 1.00
R7516:Rapgefl1 UTSW 11 98846134 missense probably benign 0.12
R7761:Rapgefl1 UTSW 11 98837659 missense probably benign 0.05
R7775:Rapgefl1 UTSW 11 98851154 missense probably damaging 1.00
R7824:Rapgefl1 UTSW 11 98851154 missense probably damaging 1.00
R8018:Rapgefl1 UTSW 11 98840340 critical splice donor site probably null
R8099:Rapgefl1 UTSW 11 98847383 missense probably damaging 0.98
R8501:Rapgefl1 UTSW 11 98842227 missense possibly damaging 0.94
Z1088:Rapgefl1 UTSW 11 98845895 missense probably damaging 0.99
Z1176:Rapgefl1 UTSW 11 98845981 missense probably damaging 0.99
Predicted Primers PCR Primer
(F):5'- GCCACGTTCAAGTGTGTATTTTC -3'
(R):5'- TTGTGATAGGAAACGCCTCC -3'

Sequencing Primer
(F):5'- CAAGTGTGTATTTTCTTAGACTGCTC -3'
(R):5'- ACGCCTCCAGGGAGAAG -3'
Posted On2018-03-15