Mutagenetix > Incidental Mutation

Incidental Mutation 'R6276:Cdk11b'

507627

Institutional Source

Beutler Lab

Gene Symbol

Cdk11b

Ensembl Gene

ENSMUSG00000029062

Gene Name

cyclin-dependent kinase 11B

Synonyms

PITSLRE proteins, CDK11-p110, Cdc2l1, Cdc2l2, CDK11-p46, CDK11-p58

MMRRC Submission

044446-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R6276 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

155624854-155649938 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 155634190 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Glycine at position 199 (E199G)

Ref Sequence

ENSEMBL: ENSMUSP00000101225 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000067081] [ENSMUST00000105598] [ENSMUST00000105600] [ENSMUST00000115821]

AlphaFold

P24788

Predicted Effect

probably benign
Transcript: ENSMUST00000067081
AA Change: E199G

PolyPhen 2 Score 0.112 (Sensitivity: 0.93; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000070527
Gene: ENSMUSG00000029062
AA Change: E199G

Domain	Start	End	E-Value	Type
low complexity region	19	48	N/A	INTRINSIC
low complexity region	93	112	N/A	INTRINSIC
coiled coil region	123	214	N/A	INTRINSIC
low complexity region	252	259	N/A	INTRINSIC
low complexity region	261	272	N/A	INTRINSIC
coiled coil region	290	337	N/A	INTRINSIC
low complexity region	369	383	N/A	INTRINSIC
S_TKc	427	712	5.05e-93	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000105598
AA Change: E165G

PolyPhen 2 Score 0.112 (Sensitivity: 0.93; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000101223
Gene: ENSMUSG00000029062
AA Change: E165G

Domain	Start	End	E-Value	Type
low complexity region	2	13	N/A	INTRINSIC
low complexity region	59	78	N/A	INTRINSIC
coiled coil region	89	180	N/A	INTRINSIC
low complexity region	218	225	N/A	INTRINSIC
low complexity region	227	238	N/A	INTRINSIC
coiled coil region	256	303	N/A	INTRINSIC
low complexity region	335	349	N/A	INTRINSIC
S_TKc	393	678	5.05e-93	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000105600
AA Change: E199G

PolyPhen 2 Score 0.112 (Sensitivity: 0.93; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000101225
Gene: ENSMUSG00000029062
AA Change: E199G

Domain	Start	End	E-Value	Type
low complexity region	19	48	N/A	INTRINSIC
low complexity region	93	112	N/A	INTRINSIC
coiled coil region	123	214	N/A	INTRINSIC
low complexity region	252	259	N/A	INTRINSIC
low complexity region	261	272	N/A	INTRINSIC
coiled coil region	290	337	N/A	INTRINSIC
low complexity region	369	383	N/A	INTRINSIC
S_TKc	427	712	5.05e-93	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000115821

SMART Domains

Protein: ENSMUSP00000111488
Gene: ENSMUSG00000073682

Domain	Start	End	E-Value	Type
SCOP:d1l9ha_	17	52	2e-3	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000135550

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000142513

Meta Mutation Damage Score

0.0953

Coding Region Coverage

1x: 99.9%
3x: 99.7%
10x: 98.3%
20x: 95.5%

Validation Efficiency

100% (71/71)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the serine/threonine protein kinase family. Members of this kinase family are known to be essential for eukaryotic cell cycle control. Due to a segmental duplication, this gene shares very high sequence identity with a neighboring gene. These two genes are frequently deleted or altered in neuroblastoma. The protein kinase encoded by this gene can be cleaved by caspases and may play a role in cell apoptosis. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2015]
PHENOTYPE: Homozygous null embryos display embryonic lethality from cell cycle arrest. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 72 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930504O13Rik	T	A	11: 58,446,366 (GRCm38)	I94L	possibly damaging	Het
4931406P16Rik	A	T	7: 34,242,377 (GRCm38)	Y627*	probably null	Het
Actr3	A	T	1: 125,395,137 (GRCm38)	D364E	probably benign	Het
Adra2c	C	T	5: 35,280,079 (GRCm38)	T65I	probably damaging	Het
Agap2	T	A	10: 127,089,360 (GRCm38)		probably null	Het
Ager	T	C	17: 34,598,754 (GRCm38)	V126A	possibly damaging	Het
Arhgap39	T	C	15: 76,737,536 (GRCm38)	I288M	probably benign	Het
Arhgap45	A	T	10: 80,026,234 (GRCm38)	S541C	probably benign	Het
Asb4	A	G	6: 5,431,043 (GRCm38)	Y426C	probably damaging	Het
Azi2	C	T	9: 118,049,338 (GRCm38)	T82I	probably damaging	Het
Baz2b	T	A	2: 59,948,223 (GRCm38)	R764S	probably damaging	Het
Ccdc146	A	C	5: 21,301,340 (GRCm38)	I701S	probably damaging	Het
Cd55b	T	A	1: 130,418,166 (GRCm38)	I172F	probably damaging	Het
Cntnap4	A	T	8: 112,752,289 (GRCm38)	T216S	possibly damaging	Het
D5Ertd579e	A	T	5: 36,604,514 (GRCm38)	N1336K	possibly damaging	Het
Dlg5	T	C	14: 24,164,568 (GRCm38)	N649S	probably damaging	Het
Dmxl1	A	G	18: 49,846,586 (GRCm38)	E96G	probably benign	Het
Dscaml1	C	T	9: 45,668,160 (GRCm38)	T335I	possibly damaging	Het
Epb41l2	G	T	10: 25,502,124 (GRCm38)	G695C	probably damaging	Het
Erbb4	C	T	1: 68,560,576 (GRCm38)	R114H	probably damaging	Het
F2rl1	G	T	13: 95,513,938 (GRCm38)	Y145*	probably null	Het
Fam58b	T	C	11: 78,751,230 (GRCm38)	K145E	probably damaging	Het
Fsip2	A	T	2: 82,980,441 (GRCm38)	Y2368F	possibly damaging	Het
Galnt7	C	T	8: 57,536,578 (GRCm38)		probably null	Het
Gm6811	T	A	17: 21,093,983 (GRCm38)		noncoding transcript	Het
Gm6811	T	G	17: 21,094,690 (GRCm38)		noncoding transcript	Het
H2-M1	G	A	17: 36,671,710 (GRCm38)	T86M	possibly damaging	Het
Hk2	T	C	6: 82,743,366 (GRCm38)	D170G	probably benign	Het
Hmcn1	C	T	1: 150,738,681 (GRCm38)	A1325T	possibly damaging	Het
Insrr	T	A	3: 87,800,519 (GRCm38)	Y89*	probably null	Het
Itga1	T	C	13: 114,980,852 (GRCm38)	E871G	probably benign	Het
Kat6a	T	C	8: 22,939,405 (GRCm38)	L1592P	possibly damaging	Het
Kndc1	C	A	7: 139,921,063 (GRCm38)	A756E	probably benign	Het
Krt12	A	T	11: 99,421,902 (GRCm38)	C105*	probably null	Het
Lama1	G	A	17: 67,784,088 (GRCm38)		probably null	Het
Lama3	A	G	18: 12,506,949 (GRCm38)	N67S	probably benign	Het
Lrrk1	A	G	7: 66,306,839 (GRCm38)		probably null	Het
Map2	T	C	1: 66,399,419 (GRCm38)	V34A	probably damaging	Het
Mroh6	A	G	15: 75,885,700 (GRCm38)	L487P	probably damaging	Het
Myo18b	A	T	5: 112,811,642 (GRCm38)	S1430T	probably benign	Het
Notch3	G	A	17: 32,154,749 (GRCm38)	T495I	probably benign	Het
Olfr391-ps	A	T	11: 73,799,403 (GRCm38)	M118K	probably damaging	Het
Palld	C	T	8: 61,513,423 (GRCm38)	A980T	probably damaging	Het
Paxip1	A	T	5: 27,761,668 (GRCm38)	I620N	probably damaging	Het
Pcdha6	A	G	18: 36,969,767 (GRCm38)		probably null	Het
Pcdhb11	G	A	18: 37,421,760 (GRCm38)	V48M	probably benign	Het
Pcdhga6	A	G	18: 37,707,644 (GRCm38)	E139G	probably benign	Het
Pck1	T	C	2: 173,157,319 (GRCm38)	V426A	probably damaging	Het
Pck2	T	A	14: 55,542,624 (GRCm38)	I110N	probably damaging	Het
Peg10	GAT	GATCAT	6: 4,756,449 (GRCm38)		probably benign	Het
Phactr3	G	A	2: 178,279,019 (GRCm38)	E222K	probably damaging	Het
Ppip5k1	A	T	2: 121,323,203 (GRCm38)		probably benign	Het
Prodh2	A	G	7: 30,506,651 (GRCm38)	H278R	probably benign	Het
Rspry1	T	A	8: 94,623,258 (GRCm38)	H91Q	probably damaging	Het
Slc13a2	CGTTATCTGT	CGT	11: 78,403,480 (GRCm38)		probably benign	Het
Smn1	A	G	13: 100,127,995 (GRCm38)	N78S	possibly damaging	Het
Spta1	T	A	1: 174,218,512 (GRCm38)	I1614N	probably damaging	Het
Syt17	T	C	7: 118,434,290 (GRCm38)	D165G	probably damaging	Het
Tbck	A	G	3: 132,743,005 (GRCm38)	Y593C	probably damaging	Het
Tcaf2	G	C	6: 42,629,753 (GRCm38)	F422L	probably benign	Het
Tex15	T	A	8: 33,577,189 (GRCm38)	F2216I	possibly damaging	Het
Trpc4	A	G	3: 54,318,020 (GRCm38)	E846G	probably benign	Het
Ttc41	T	C	10: 86,744,449 (GRCm38)	I753T	probably benign	Het
Vdac1	C	T	11: 52,376,482 (GRCm38)	T70M	possibly damaging	Het
Vmn1r124	A	C	7: 21,260,179 (GRCm38)	F147V	probably benign	Het
Vmn1r220	T	C	13: 23,184,295 (GRCm38)	D77G	probably damaging	Het
Vmn2r28	T	C	7: 5,490,731 (GRCm38)	H72R	probably benign	Het
Vmn2r78	A	T	7: 86,921,110 (GRCm38)	I279L	probably benign	Het
Vmn2r95	G	T	17: 18,451,470 (GRCm38)	A490S	possibly damaging	Het
Wdfy4	C	T	14: 33,109,525 (GRCm38)	A915T	possibly damaging	Het
Zmiz2	G	T	11: 6,395,604 (GRCm38)		probably null	Het
Zscan2	A	G	7: 80,875,809 (GRCm38)	N426S	probably benign	Het

Other mutations in Cdk11b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01764:Cdk11b	APN	4	155,628,803 (GRCm38)	missense	possibly damaging	0.54
R0071:Cdk11b	UTSW	4	155,649,423 (GRCm38)	unclassified	probably benign
R0071:Cdk11b	UTSW	4	155,649,423 (GRCm38)	unclassified	probably benign
R0145:Cdk11b	UTSW	4	155,641,619 (GRCm38)	intron	probably benign
R0372:Cdk11b	UTSW	4	155,641,500 (GRCm38)	intron	probably benign
R0426:Cdk11b	UTSW	4	155,642,512 (GRCm38)	intron	probably benign
R0471:Cdk11b	UTSW	4	155,647,542 (GRCm38)	unclassified	probably benign
R0627:Cdk11b	UTSW	4	155,640,772 (GRCm38)	intron	probably benign
R1475:Cdk11b	UTSW	4	155,634,217 (GRCm38)	missense	probably damaging	1.00
R1611:Cdk11b	UTSW	4	155,641,575 (GRCm38)	intron	probably benign
R1719:Cdk11b	UTSW	4	155,648,397 (GRCm38)	unclassified	probably benign
R1750:Cdk11b	UTSW	4	155,628,680 (GRCm38)	splice site	probably null
R2061:Cdk11b	UTSW	4	155,641,604 (GRCm38)	intron	probably benign
R2274:Cdk11b	UTSW	4	155,647,594 (GRCm38)	unclassified	probably benign
R2922:Cdk11b	UTSW	4	155,640,744 (GRCm38)	intron	probably benign
R3719:Cdk11b	UTSW	4	155,626,886 (GRCm38)	missense	probably damaging	1.00
R3917:Cdk11b	UTSW	4	155,626,801 (GRCm38)	missense	probably damaging	1.00
R4077:Cdk11b	UTSW	4	155,639,747 (GRCm38)	intron	probably benign
R4078:Cdk11b	UTSW	4	155,639,747 (GRCm38)	intron	probably benign
R5033:Cdk11b	UTSW	4	155,648,825 (GRCm38)	unclassified	probably benign
R5212:Cdk11b	UTSW	4	155,638,615 (GRCm38)	splice site	probably null
R5556:Cdk11b	UTSW	4	155,634,147 (GRCm38)	nonsense	probably null
R5622:Cdk11b	UTSW	4	155,630,217 (GRCm38)	missense	probably damaging	1.00
R5927:Cdk11b	UTSW	4	155,648,240 (GRCm38)	unclassified	probably benign
R5975:Cdk11b	UTSW	4	155,648,240 (GRCm38)	unclassified	probably benign
R6278:Cdk11b	UTSW	4	155,649,603 (GRCm38)	unclassified	probably benign
R6905:Cdk11b	UTSW	4	155,641,608 (GRCm38)	intron	probably benign
R6998:Cdk11b	UTSW	4	155,648,343 (GRCm38)	nonsense	probably null
R7021:Cdk11b	UTSW	4	155,641,567 (GRCm38)	intron	probably benign
R7062:Cdk11b	UTSW	4	155,626,811 (GRCm38)	missense	probably damaging	1.00
R7100:Cdk11b	UTSW	4	155,625,593 (GRCm38)	missense	probably damaging	1.00
R7338:Cdk11b	UTSW	4	155,647,551 (GRCm38)	missense	unknown
R7811:Cdk11b	UTSW	4	155,639,902 (GRCm38)	missense	unknown
R8213:Cdk11b	UTSW	4	155,639,881 (GRCm38)	missense	unknown
R8257:Cdk11b	UTSW	4	155,647,941 (GRCm38)	missense	unknown
R8696:Cdk11b	UTSW	4	155,648,322 (GRCm38)	missense	unknown
R9419:Cdk11b	UTSW	4	155,639,845 (GRCm38)	missense	unknown
R9546:Cdk11b	UTSW	4	155,649,132 (GRCm38)	missense	unknown
R9628:Cdk11b	UTSW	4	155,649,697 (GRCm38)	missense	unknown
R9792:Cdk11b	UTSW	4	155,647,921 (GRCm38)	missense	unknown
R9793:Cdk11b	UTSW	4	155,647,921 (GRCm38)	missense	unknown
Z1088:Cdk11b	UTSW	4	155,641,564 (GRCm38)	intron	probably benign

Predicted Primers

PCR Primer
(F):5'- GGTCTAAGAGACTTCTGTCAGCC -3'
(R):5'- TATCTTTCCCAGAGCCCAGG -3'

Sequencing Primer
(F):5'- CCTTTAATTGCAGCACTCAGGAGG -3'
(R):5'- GCGTGGCTGTCACATCACAG -3'

Posted On

2018-03-15