Mutagenetix > Incidental Mutation

Incidental Mutation 'R6276:Arhgap39'

507673

Institutional Source

Beutler Lab

Gene Symbol

Arhgap39

Ensembl Gene

ENSMUSG00000033697

Gene Name

Rho GTPase activating protein 39

Synonyms

D15Wsu169e

MMRRC Submission

044446-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.219) question?

Stock #

R6276 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

76608183-76702366 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 76621736 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Methionine at position 288 (I288M)

Ref Sequence

ENSEMBL: ENSMUSP00000076993 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000036176] [ENSMUST00000077821]

AlphaFold

P59281

Predicted Effect

probably benign
Transcript: ENSMUST00000036176
AA Change: I288M

PolyPhen 2 Score 0.020 (Sensitivity: 0.95; Specificity: 0.80)

SMART Domains

Protein: ENSMUSP00000036697
Gene: ENSMUSG00000033697
AA Change: I288M

Domain	Start	End	E-Value	Type
WW	27	60	1.64e0	SMART
WW	66	99	5.41e-1	SMART
low complexity region	125	138	N/A	INTRINSIC
low complexity region	304	318	N/A	INTRINSIC
Pfam:MyTH4	759	904	2.3e-32	PFAM
RhoGAP	932	1105	5.9e-28	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000077821
AA Change: I288M

PolyPhen 2 Score 0.058 (Sensitivity: 0.94; Specificity: 0.84)

SMART Domains

Protein: ENSMUSP00000076993
Gene: ENSMUSG00000033697
AA Change: I288M

Domain	Start	End	E-Value	Type
WW	27	60	1.64e0	SMART
WW	66	99	5.41e-1	SMART
low complexity region	125	138	N/A	INTRINSIC
low complexity region	304	318	N/A	INTRINSIC
Pfam:MyTH4	756	874	3.3e-25	PFAM
RhoGAP	901	1074	5.9e-28	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000177011

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.9%
3x: 99.7%
10x: 98.3%
20x: 95.5%

Validation Efficiency

100% (71/71)

Allele List at MGI

Other mutations in this stock

Total: 72 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Actr3	A	T	1: 125,322,874 (GRCm39)	D364E	probably benign	Het
Adra2c	C	T	5: 35,437,423 (GRCm39)	T65I	probably damaging	Het
Agap2	T	A	10: 126,925,229 (GRCm39)		probably null	Het
Ager	T	C	17: 34,817,728 (GRCm39)	V126A	possibly damaging	Het
Arhgap45	A	T	10: 79,862,068 (GRCm39)	S541C	probably benign	Het
Asb4	A	G	6: 5,431,043 (GRCm39)	Y426C	probably damaging	Het
Azi2	C	T	9: 117,878,406 (GRCm39)	T82I	probably damaging	Het
Baz2b	T	A	2: 59,778,567 (GRCm39)	R764S	probably damaging	Het
Ccdc146	A	C	5: 21,506,338 (GRCm39)	I701S	probably damaging	Het
Ccnq	T	C	11: 78,642,056 (GRCm39)	K145E	probably damaging	Het
Cd55b	T	A	1: 130,345,903 (GRCm39)	I172F	probably damaging	Het
Cdk11b	A	G	4: 155,718,647 (GRCm39)	E199G	probably benign	Het
Cntnap4	A	T	8: 113,478,921 (GRCm39)	T216S	possibly damaging	Het
D5Ertd579e	A	T	5: 36,761,858 (GRCm39)	N1336K	possibly damaging	Het
Dlg5	T	C	14: 24,214,636 (GRCm39)	N649S	probably damaging	Het
Dmxl1	A	G	18: 49,979,653 (GRCm39)	E96G	probably benign	Het
Dscaml1	C	T	9: 45,579,458 (GRCm39)	T335I	possibly damaging	Het
Epb41l2	G	T	10: 25,378,022 (GRCm39)	G695C	probably damaging	Het
Erbb4	C	T	1: 68,599,735 (GRCm39)	R114H	probably damaging	Het
F2rl1	G	T	13: 95,650,446 (GRCm39)	Y145*	probably null	Het
Fsip2	A	T	2: 82,810,785 (GRCm39)	Y2368F	possibly damaging	Het
Galnt7	C	T	8: 57,989,612 (GRCm39)		probably null	Het
Garre1	A	T	7: 33,941,802 (GRCm39)	Y627*	probably null	Het
Gm6811	T	A	17: 21,314,245 (GRCm39)		noncoding transcript	Het
Gm6811	T	G	17: 21,314,952 (GRCm39)		noncoding transcript	Het
H2-M1	G	A	17: 36,982,602 (GRCm39)	T86M	possibly damaging	Het
Hk2	T	C	6: 82,720,347 (GRCm39)	D170G	probably benign	Het
Hmcn1	C	T	1: 150,614,432 (GRCm39)	A1325T	possibly damaging	Het
Insrr	T	A	3: 87,707,826 (GRCm39)	Y89*	probably null	Het
Itga1	T	C	13: 115,117,388 (GRCm39)	E871G	probably benign	Het
Kat6a	T	C	8: 23,429,421 (GRCm39)	L1592P	possibly damaging	Het
Kndc1	C	A	7: 139,500,979 (GRCm39)	A756E	probably benign	Het
Krt12	A	T	11: 99,312,728 (GRCm39)	C105*	probably null	Het
Lama1	G	A	17: 68,091,083 (GRCm39)		probably null	Het
Lama3	A	G	18: 12,640,006 (GRCm39)	N67S	probably benign	Het
Lrrk1	A	G	7: 65,956,587 (GRCm39)		probably null	Het
Lypd9	T	A	11: 58,337,192 (GRCm39)	I94L	possibly damaging	Het
Map2	T	C	1: 66,438,578 (GRCm39)	V34A	probably damaging	Het
Mroh6	A	G	15: 75,757,549 (GRCm39)	L487P	probably damaging	Het
Myo18b	A	T	5: 112,959,508 (GRCm39)	S1430T	probably benign	Het
Notch3	G	A	17: 32,373,723 (GRCm39)	T495I	probably benign	Het
Or1e31	A	T	11: 73,690,229 (GRCm39)	M118K	probably damaging	Het
Palld	C	T	8: 61,966,457 (GRCm39)	A980T	probably damaging	Het
Paxip1	A	T	5: 27,966,666 (GRCm39)	I620N	probably damaging	Het
Pcdha6	A	G	18: 37,102,820 (GRCm39)		probably null	Het
Pcdhb11	G	A	18: 37,554,813 (GRCm39)	V48M	probably benign	Het
Pcdhga6	A	G	18: 37,840,697 (GRCm39)	E139G	probably benign	Het
Pck1	T	C	2: 172,999,112 (GRCm39)	V426A	probably damaging	Het
Pck2	T	A	14: 55,780,081 (GRCm39)	I110N	probably damaging	Het
Peg10	GAT	GATCAT	6: 4,756,449 (GRCm39)		probably benign	Het
Phactr3	G	A	2: 177,920,812 (GRCm39)	E222K	probably damaging	Het
Ppip5k1	A	T	2: 121,153,684 (GRCm39)		probably benign	Het
Prodh2	A	G	7: 30,206,076 (GRCm39)	H278R	probably benign	Het
Rspry1	T	A	8: 95,349,886 (GRCm39)	H91Q	probably damaging	Het
Slc13a2	CGTTATCTGT	CGT	11: 78,294,306 (GRCm39)		probably benign	Het
Smn1	A	G	13: 100,264,503 (GRCm39)	N78S	possibly damaging	Het
Spta1	T	A	1: 174,046,078 (GRCm39)	I1614N	probably damaging	Het
Syt17	T	C	7: 118,033,513 (GRCm39)	D165G	probably damaging	Het
Tbck	A	G	3: 132,448,766 (GRCm39)	Y593C	probably damaging	Het
Tcaf2	G	C	6: 42,606,687 (GRCm39)	F422L	probably benign	Het
Tex15	T	A	8: 34,067,217 (GRCm39)	F2216I	possibly damaging	Het
Trpc4	A	G	3: 54,225,441 (GRCm39)	E846G	probably benign	Het
Ttc41	T	C	10: 86,580,313 (GRCm39)	I753T	probably benign	Het
Vdac1	C	T	11: 52,267,309 (GRCm39)	T70M	possibly damaging	Het
Vmn1r124	A	C	7: 20,994,104 (GRCm39)	F147V	probably benign	Het
Vmn1r220	T	C	13: 23,368,465 (GRCm39)	D77G	probably damaging	Het
Vmn2r28	T	C	7: 5,493,730 (GRCm39)	H72R	probably benign	Het
Vmn2r78	A	T	7: 86,570,318 (GRCm39)	I279L	probably benign	Het
Vmn2r95	G	T	17: 18,671,732 (GRCm39)	A490S	possibly damaging	Het
Wdfy4	C	T	14: 32,831,482 (GRCm39)	A915T	possibly damaging	Het
Zmiz2	G	T	11: 6,345,604 (GRCm39)		probably null	Het
Zscan2	A	G	7: 80,525,557 (GRCm39)	N426S	probably benign	Het

Other mutations in Arhgap39

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01547:Arhgap39	APN	15	76,622,015 (GRCm39)	splice site	probably benign
IGL01586:Arhgap39	APN	15	76,614,638 (GRCm39)	missense	probably benign	0.16
IGL01693:Arhgap39	APN	15	76,610,167 (GRCm39)	missense	probably null	1.00
IGL02017:Arhgap39	APN	15	76,621,237 (GRCm39)	missense	probably damaging	0.98
IGL02508:Arhgap39	APN	15	76,609,184 (GRCm39)	makesense	probably null
IGL03333:Arhgap39	APN	15	76,610,932 (GRCm39)	missense	probably benign	0.05
R0328:Arhgap39	UTSW	15	76,636,152 (GRCm39)	splice site	probably benign
R0432:Arhgap39	UTSW	15	76,619,086 (GRCm39)	missense	probably damaging	0.99
R0479:Arhgap39	UTSW	15	76,619,086 (GRCm39)	missense	probably damaging	0.99
R0549:Arhgap39	UTSW	15	76,619,086 (GRCm39)	missense	probably damaging	0.99
R0551:Arhgap39	UTSW	15	76,619,086 (GRCm39)	missense	probably damaging	0.99
R1054:Arhgap39	UTSW	15	76,635,759 (GRCm39)	missense	probably benign
R1830:Arhgap39	UTSW	15	76,619,383 (GRCm39)	missense	probably damaging	1.00
R2421:Arhgap39	UTSW	15	76,609,346 (GRCm39)	missense	probably damaging	1.00
R2497:Arhgap39	UTSW	15	76,609,585 (GRCm39)	missense	probably damaging	1.00
R3909:Arhgap39	UTSW	15	76,636,088 (GRCm39)	missense	probably benign	0.03
R4410:Arhgap39	UTSW	15	76,609,712 (GRCm39)	unclassified	probably benign
R4626:Arhgap39	UTSW	15	76,621,837 (GRCm39)	missense	possibly damaging	0.92
R4790:Arhgap39	UTSW	15	76,610,931 (GRCm39)	missense	possibly damaging	0.51
R4792:Arhgap39	UTSW	15	76,625,717 (GRCm39)	missense	possibly damaging	0.92
R4911:Arhgap39	UTSW	15	76,622,005 (GRCm39)	missense	probably damaging	1.00
R5225:Arhgap39	UTSW	15	76,609,715 (GRCm39)	unclassified	probably benign
R5417:Arhgap39	UTSW	15	76,619,301 (GRCm39)	missense	possibly damaging	0.80
R5443:Arhgap39	UTSW	15	76,682,125 (GRCm39)	intron	probably benign
R5521:Arhgap39	UTSW	15	76,649,694 (GRCm39)	missense	possibly damaging	0.66
R5686:Arhgap39	UTSW	15	76,610,833 (GRCm39)	missense	probably damaging	1.00
R5747:Arhgap39	UTSW	15	76,625,735 (GRCm39)	missense	possibly damaging	0.68
R5785:Arhgap39	UTSW	15	76,621,618 (GRCm39)	missense	probably benign
R5879:Arhgap39	UTSW	15	76,636,007 (GRCm39)	missense	probably damaging	1.00
R6035:Arhgap39	UTSW	15	76,621,424 (GRCm39)	nonsense	probably null
R6035:Arhgap39	UTSW	15	76,621,424 (GRCm39)	nonsense	probably null
R6049:Arhgap39	UTSW	15	76,611,601 (GRCm39)	critical splice donor site	probably null
R6143:Arhgap39	UTSW	15	76,614,606 (GRCm39)	nonsense	probably null
R6232:Arhgap39	UTSW	15	76,620,712 (GRCm39)	missense	probably damaging	1.00
R6277:Arhgap39	UTSW	15	76,619,337 (GRCm39)	missense	probably damaging	1.00
R6305:Arhgap39	UTSW	15	76,621,902 (GRCm39)	missense	probably benign	0.31
R6587:Arhgap39	UTSW	15	76,621,699 (GRCm39)	missense	probably damaging	1.00
R7153:Arhgap39	UTSW	15	76,649,691 (GRCm39)	missense	probably benign	0.09
R7447:Arhgap39	UTSW	15	76,649,797 (GRCm39)	start gained	probably benign
R7658:Arhgap39	UTSW	15	76,621,617 (GRCm39)	missense	probably benign	0.03
R8071:Arhgap39	UTSW	15	76,621,702 (GRCm39)	missense	probably benign
R8269:Arhgap39	UTSW	15	76,635,942 (GRCm39)	missense	probably benign	0.35
R8368:Arhgap39	UTSW	15	76,619,455 (GRCm39)	missense	probably damaging	1.00
R9124:Arhgap39	UTSW	15	76,619,467 (GRCm39)	missense	probably damaging	1.00
R9333:Arhgap39	UTSW	15	76,619,325 (GRCm39)	missense	probably damaging	1.00
R9438:Arhgap39	UTSW	15	76,636,118 (GRCm39)	missense	probably damaging	0.96
R9602:Arhgap39	UTSW	15	76,610,954 (GRCm39)	missense	probably damaging	0.98
R9615:Arhgap39	UTSW	15	76,621,438 (GRCm39)	missense	probably benign	0.02
R9700:Arhgap39	UTSW	15	76,611,617 (GRCm39)	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- CAGGAATGGATGGGGCTTTC -3'
(R):5'- ATGCTCATCAAGGTTGCCG -3'

Sequencing Primer
(F):5'- GCTTTCGGCCTGGGGAC -3'
(R):5'- GCAATGGCTATCCCGCAGAC -3'

Posted On

2018-03-15