Mutagenetix > Incidental Mutation

Incidental Mutation 'R6283:Ctdsp2'

508064

Institutional Source

Beutler Lab

Gene Symbol

Ctdsp2

Ensembl Gene

ENSMUSG00000078429

Gene Name

CTD small phosphatase 2

Synonyms

SCP2, OS4, D10Ertd73e

MMRRC Submission

044453-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.537) question?

Stock #

R6283 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

126814586-126835844 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 126831749 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Alanine at position 145 (V145A)

Ref Sequence

ENSEMBL: ENSMUSP00000100891 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000026500] [ENSMUST00000105255] [ENSMUST00000105256] [ENSMUST00000142698]

AlphaFold

Q8BX07

Predicted Effect

probably benign
Transcript: ENSMUST00000026500

SMART Domains

Protein: ENSMUSP00000026500
Gene: ENSMUSG00000025432

Domain	Start	End	E-Value	Type
GEL	14	111	9.44e-24	SMART
GEL	132	226	8.89e-20	SMART
GEL	253	346	1.19e-29	SMART
GEL	395	492	2.07e-29	SMART
GEL	512	598	4.01e-27	SMART
GEL	617	711	2.81e-31	SMART
VHP	784	819	1.31e-17	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000083496

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000102105

Predicted Effect

probably benign
Transcript: ENSMUST00000105255

SMART Domains

Protein: ENSMUSP00000100890
Gene: ENSMUSG00000078429

Domain	Start	End	E-Value	Type
CPDc	1	91	3.33e-24	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000105256
AA Change: V145A

PolyPhen 2 Score 0.763 (Sensitivity: 0.85; Specificity: 0.92)

SMART Domains

Protein: ENSMUSP00000100891
Gene: ENSMUSG00000078429
AA Change: V145A

Domain	Start	End	E-Value	Type
low complexity region	25	32	N/A	INTRINSIC
CPDc	99	242	1.45e-74	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000142698

SMART Domains

Protein: ENSMUSP00000117667
Gene: ENSMUSG00000025432

Domain	Start	End	E-Value	Type
SCOP:d1d4xg_	5	53	2e-17	SMART
PDB:2VIL\|A	14	53	2e-14	PDB
Blast:GEL	14	54	7e-24	BLAST

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000217738

Coding Region Coverage

1x: 99.9%
3x: 99.6%
10x: 98.0%
20x: 94.1%

Validation Efficiency

100% (59/59)

Allele List at MGI

Other mutations in this stock

Total: 58 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acsf3	C	A	8: 123,512,694 (GRCm39)	R372S	probably damaging	Het
Adamts20	A	G	15: 94,249,602 (GRCm39)	S472P	probably benign	Het
Bhlhe40	T	C	6: 108,641,992 (GRCm39)	L312P	probably damaging	Het
Ccdc180	A	G	4: 45,902,486 (GRCm39)	E305G	possibly damaging	Het
Ccdc83	T	A	7: 89,885,615 (GRCm39)	R257*	probably null	Het
Cd209e	G	A	8: 3,899,212 (GRCm39)	Q167*	probably null	Het
Cd300e	G	A	11: 114,945,380 (GRCm39)	T138I	probably benign	Het
Ces2c	A	T	8: 105,576,331 (GRCm39)	M115L	probably benign	Het
Cfap61	T	A	2: 145,971,022 (GRCm39)		probably null	Het
Chd1l	G	A	3: 97,494,483 (GRCm39)	A399V	probably damaging	Het
Cic	C	T	7: 24,985,459 (GRCm39)	S301L	probably damaging	Het
Cks2	A	G	13: 51,799,495 (GRCm39)	H16R	probably benign	Het
Copa	A	T	1: 171,946,415 (GRCm39)	H953L	possibly damaging	Het
Cyp2j13	A	G	4: 95,945,074 (GRCm39)	V377A	possibly damaging	Het
Dhx57	A	G	17: 80,582,234 (GRCm39)	V404A	probably benign	Het
Dock2	T	C	11: 34,598,152 (GRCm39)	S340G	probably damaging	Het
Ggps1	A	G	13: 14,232,379 (GRCm39)		probably null	Het
Gm10549	C	A	18: 33,597,358 (GRCm39)		probably benign	Het
Gm11444	T	C	11: 85,737,617 (GRCm39)		probably null	Het
Grina	A	G	15: 76,132,751 (GRCm39)	T173A	possibly damaging	Het
Hcrtr1	G	A	4: 130,029,133 (GRCm39)	T223I	probably benign	Het
Igsf10	T	A	3: 59,226,870 (GRCm39)	T2268S	probably damaging	Het
Inhca	G	A	9: 103,159,834 (GRCm39)	R14*	probably null	Het
Ino80d	C	T	1: 63,101,285 (GRCm39)	R447Q	probably damaging	Het
Inpp4b	C	T	8: 82,497,462 (GRCm39)	T94M	probably damaging	Het
Itga2	A	G	13: 115,005,786 (GRCm39)	Y465H	probably damaging	Het
Knl1	A	G	2: 118,900,767 (GRCm39)	T823A	probably damaging	Het
Krtap4-16	A	G	11: 99,741,861 (GRCm39)	S180P	unknown	Het
Ldc1	A	G	4: 130,115,534 (GRCm39)	S5P	probably benign	Het
Lpar6	A	T	14: 73,476,297 (GRCm39)	D86V	probably damaging	Het
Muc5ac	C	A	7: 141,370,601 (GRCm39)	C2500*	probably null	Het
Mzf1	T	C	7: 12,787,296 (GRCm39)		probably benign	Het
Or4f58	A	C	2: 111,851,605 (GRCm39)	M198R	possibly damaging	Het
Or5d46	T	A	2: 88,170,002 (GRCm39)	I31N	probably benign	Het
Or5m3	G	T	2: 85,838,443 (GRCm39)	V108L	possibly damaging	Het
Or7a36	T	C	10: 78,820,113 (GRCm39)	V163A	probably benign	Het
Otogl	T	G	10: 107,626,361 (GRCm39)	E1501A	probably damaging	Het
Pcdh10	T	A	3: 45,335,989 (GRCm39)	S768T	possibly damaging	Het
Pcnx2	G	T	8: 126,604,325 (GRCm39)	Q644K	probably damaging	Het
Pdzd9	T	A	7: 120,259,449 (GRCm39)	I180F	possibly damaging	Het
Pinx1	A	C	14: 64,115,621 (GRCm39)	N152T	probably benign	Het
Prr14l	T	C	5: 32,987,608 (GRCm39)	E629G	probably benign	Het
Qpctl	T	A	7: 18,882,345 (GRCm39)	I104F	probably benign	Het
Rabep1	C	T	11: 70,808,505 (GRCm39)	A444V	probably damaging	Het
Rnf150	A	G	8: 83,717,183 (GRCm39)	Y230C	probably damaging	Het
Slc25a27	A	C	17: 43,968,621 (GRCm39)	V152G	probably damaging	Het
Swt1	A	G	1: 151,260,084 (GRCm39)	S772P	possibly damaging	Het
Tenm4	A	G	7: 96,523,701 (GRCm39)	T1711A	probably benign	Het
Tfap2d	G	C	1: 19,174,702 (GRCm39)	G52R	probably benign	Het
Tmem265	T	G	7: 127,164,044 (GRCm39)	V86G	possibly damaging	Het
Trpm8	C	T	1: 88,276,054 (GRCm39)	H551Y	probably benign	Het
Ttc6	T	G	12: 57,749,048 (GRCm39)	Y1327D	possibly damaging	Het
Uevld	G	T	7: 46,587,729 (GRCm39)	Q324K	possibly damaging	Het
Vmn2r111	T	C	17: 22,778,032 (GRCm39)	N549S	possibly damaging	Het
Vmn2r73	C	T	7: 85,521,049 (GRCm39)	M306I	probably benign	Het
Vmn2r93	T	A	17: 18,524,366 (GRCm39)	M120K	probably benign	Het
Zfp804b	T	A	5: 6,819,908 (GRCm39)	I1016F	probably benign	Het
Zfp90	T	C	8: 107,152,026 (GRCm39)	C580R	probably damaging	Het

Other mutations in Ctdsp2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01417:Ctdsp2	APN	10	126,829,743 (GRCm39)	missense	probably benign	0.08
IGL02327:Ctdsp2	APN	10	126,832,251 (GRCm39)	missense	probably benign	0.26
IGL03283:Ctdsp2	APN	10	126,832,266 (GRCm39)	missense	probably benign	0.00
R1463:Ctdsp2	UTSW	10	126,829,790 (GRCm39)	splice site	probably benign
R4724:Ctdsp2	UTSW	10	126,828,938 (GRCm39)	missense	probably damaging	0.99
R5327:Ctdsp2	UTSW	10	126,831,923 (GRCm39)	missense	probably damaging	1.00
R5385:Ctdsp2	UTSW	10	126,832,326 (GRCm39)	missense	probably benign
R5994:Ctdsp2	UTSW	10	126,831,689 (GRCm39)	unclassified	probably benign
R8558:Ctdsp2	UTSW	10	126,829,746 (GRCm39)	missense	probably damaging	1.00
R9002:Ctdsp2	UTSW	10	126,832,061 (GRCm39)	missense	probably damaging	1.00
R9563:Ctdsp2	UTSW	10	126,832,040 (GRCm39)	missense	probably damaging	1.00
R9564:Ctdsp2	UTSW	10	126,832,040 (GRCm39)	missense	probably damaging	1.00
R9565:Ctdsp2	UTSW	10	126,832,040 (GRCm39)	missense	probably damaging	1.00
Z1177:Ctdsp2	UTSW	10	126,831,941 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GTAACATGGTAGAGCTGTCCATGG -3'
(R):5'- TTGACATAGCAGCCCTGGTG -3'

Sequencing Primer
(F):5'- TCCATGGTGGGGCAGAG -3'
(R):5'- CAAGCCTCTCGGAACAGG -3'

Posted On

2018-03-15