Mutagenetix > Incidental Mutation

Incidental Mutation 'R6290:Pcyox1'

508359

Institutional Source

Beutler Lab

Gene Symbol

Pcyox1

Ensembl Gene

ENSMUSG00000029998

Gene Name

prenylcysteine oxidase 1

Synonyms

1200015P13Rik, PCL1, Pcly

MMRRC Submission

044460-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R6290 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

86362988-86374132 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 86365881 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Lysine to Asparagine at position 444 (K444N)

Ref Sequence

ENSEMBL: ENSMUSP00000032065 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000032065] [ENSMUST00000153723] [ENSMUST00000204116]

AlphaFold

Q9CQF9

Predicted Effect

probably benign
Transcript: ENSMUST00000032065
AA Change: K444N

PolyPhen 2 Score 0.243 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000032065
Gene: ENSMUSG00000029998
AA Change: K444N

Domain	Start	End	E-Value	Type
signal peptide	1	28	N/A	INTRINSIC
Pfam:NAD_binding_8	39	106	8.2e-13	PFAM
Pfam:Amino_oxidase	44	346	7.1e-9	PFAM
Pfam:Prenylcys_lyase	128	501	8.1e-157	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000131500

SMART Domains

Protein: ENSMUSP00000122602
Gene: ENSMUSG00000029998

Domain	Start	End	E-Value	Type
Pfam:Prenylcys_lyase	1	73	6.1e-25	PFAM
Pfam:Prenylcys_lyase	69	197	7.1e-40	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000153723

SMART Domains

Protein: ENSMUSP00000119449
Gene: ENSMUSG00000029998

Domain	Start	End	E-Value	Type
signal peptide	1	28	N/A	INTRINSIC
Pfam:Prenylcys_lyase	59	181	5.5e-67	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000204116

SMART Domains

Protein: ENSMUSP00000145474
Gene: ENSMUSG00000029998

Domain	Start	End	E-Value	Type
signal peptide	1	28	N/A	INTRINSIC
Pfam:NAD_binding_8	39	106	4.9e-12	PFAM
Pfam:Amino_oxidase	44	136	3.3e-7	PFAM

Coding Region Coverage

1x: 99.9%
3x: 99.6%
10x: 98.3%
20x: 95.2%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Prenylcysteine is released during the degradation of prenylated proteins. PCYOX1 catalyzes the degradation of prenylcysteine to yield free cysteines and a hydrophobic isoprenoid product (Tschantz et al., 1999 [PubMed 10585463]).[supplied by OMIM, Mar 2008]
PHENOTYPE: Mice homozygous for a knock-out allele are viable, fertile and free of obvious pathology despite a striking accumulation of both farnesylcysteine and geranylgeranylcysteine in brain and liver. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 58 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aim2	T	A	1: 173,289,681 (GRCm39)	I208N	possibly damaging	Het
Albfm1	T	C	5: 90,740,864 (GRCm39)		probably null	Het
Ank3	A	C	10: 69,827,198 (GRCm39)		probably benign	Het
Arfgef1	T	C	1: 10,259,036 (GRCm39)	E687G	possibly damaging	Het
Ash1l	T	A	3: 88,890,068 (GRCm39)	L649*	probably null	Het
Atp7b	C	T	8: 22,510,836 (GRCm39)	G437S	probably damaging	Het
Cep89	G	A	7: 35,119,688 (GRCm39)	G349D	probably damaging	Het
Cntn6	T	A	6: 104,744,851 (GRCm39)	Y315N	probably damaging	Het
Cspg4b	A	T	13: 113,456,492 (GRCm39)	N846I	probably damaging	Het
Csrp2	T	C	10: 110,767,844 (GRCm39)	C10R	probably damaging	Het
Cux1	T	C	5: 136,340,412 (GRCm39)	N625D	probably damaging	Het
Dnah9	T	C	11: 65,732,201 (GRCm39)	N4235S	probably damaging	Het
Dpy19l1	A	G	9: 24,373,896 (GRCm39)	C265R	probably damaging	Het
Dse	A	G	10: 34,028,336 (GRCm39)	M918T	probably benign	Het
Duox1	C	A	2: 122,164,288 (GRCm39)	T916N	possibly damaging	Het
E130308A19Rik	A	T	4: 59,691,332 (GRCm39)	I389F	probably benign	Het
Eif2ak1	T	A	5: 143,821,617 (GRCm39)	V311D	probably benign	Het
Eps15	T	A	4: 109,220,395 (GRCm39)	M534K	probably benign	Het
Gpr182	A	T	10: 127,586,893 (GRCm39)	F19L	probably benign	Het
Ifi214	T	A	1: 173,356,983 (GRCm39)	D40V	probably damaging	Het
Klhl2	A	G	8: 65,264,351 (GRCm39)	V121A	possibly damaging	Het
Klrh1	A	G	6: 129,743,658 (GRCm39)	Y209H	probably benign	Het
Mylk	T	A	16: 34,715,213 (GRCm39)	S514T	probably benign	Het
Myo18b	C	T	5: 113,013,601 (GRCm39)	R785H	possibly damaging	Het
Naga	T	G	15: 82,219,057 (GRCm39)	D230A	possibly damaging	Het
Napsa	A	G	7: 44,230,761 (GRCm39)	N70D	probably benign	Het
Nup210l	T	A	3: 90,027,216 (GRCm39)	Y199*	probably null	Het
Olfml2b	A	T	1: 170,477,359 (GRCm39)	K165*	probably null	Het
Or1j20	C	T	2: 36,760,448 (GRCm39)	P290L	probably damaging	Het
Paxip1	A	T	5: 27,970,576 (GRCm39)		probably null	Het
Pikfyve	T	A	1: 65,242,084 (GRCm39)		probably null	Het
Ppp6r3	T	C	19: 3,544,011 (GRCm39)	I335V	probably benign	Het
Prkcz	A	G	4: 155,440,956 (GRCm39)	S71P	probably damaging	Het
Psg19	C	T	7: 18,528,014 (GRCm39)	R243Q	probably benign	Het
Ptbp2	A	T	3: 119,517,769 (GRCm39)	M382K	possibly damaging	Het
Slc16a14	T	A	1: 84,885,106 (GRCm39)	I478L	probably benign	Het
Slc45a1	A	T	4: 150,727,096 (GRCm39)	N174K	probably damaging	Het
Slc5a5	G	A	8: 71,343,822 (GRCm39)	T160I	probably damaging	Het
Smpdl3b	T	A	4: 132,465,586 (GRCm39)	H278L	possibly damaging	Het
Sorcs2	C	T	5: 36,219,931 (GRCm39)	R371H	probably damaging	Het
Synpo2	A	T	3: 122,910,701 (GRCm39)	S315T	probably damaging	Het
Taok3	A	G	5: 117,342,433 (GRCm39)	Y137C	probably damaging	Het
Tapbpl	T	C	6: 125,207,679 (GRCm39)	D49G	probably benign	Het
Tbr1	T	C	2: 61,635,394 (GRCm39)	S115P	probably benign	Het
Trim67	C	T	8: 125,549,918 (GRCm39)	T516I	probably benign	Het
Trrap	T	A	5: 144,741,828 (GRCm39)	L1351Q	probably damaging	Het
Tsc2	A	G	17: 24,815,884 (GRCm39)	I166T	probably benign	Het
Tspan8	T	A	10: 115,663,729 (GRCm39)	C22S	probably damaging	Het
Tyro3	T	C	2: 119,647,321 (GRCm39)	S813P	probably benign	Het
U2af2	G	T	7: 5,078,683 (GRCm39)	V421L	probably benign	Het
Vmn1r77	T	C	7: 11,775,736 (GRCm39)	S103P	probably damaging	Het
Vmn2r1	T	A	3: 64,012,873 (GRCm39)	D911E	probably benign	Het
Vmn2r115	ATCTTCT	ATCT	17: 23,578,962 (GRCm39)		probably benign	Het
Vmn2r56	A	T	7: 12,428,809 (GRCm39)	C486S	probably damaging	Het
Vwa8	A	G	14: 79,331,772 (GRCm39)		probably null	Het
Xirp1	T	G	9: 119,847,791 (GRCm39)	E364A	probably benign	Het
Zbp1	T	C	2: 173,057,634 (GRCm39)	E99G	probably damaging	Het
Zfp385b	C	A	2: 77,280,612 (GRCm39)	V109F	possibly damaging	Het

Other mutations in Pcyox1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01722:Pcyox1	APN	6	86,365,735 (GRCm39)	missense	probably damaging	1.00
IGL02008:Pcyox1	APN	6	86,369,250 (GRCm39)	missense	probably benign	0.01
IGL02655:Pcyox1	APN	6	86,366,326 (GRCm39)	missense	probably damaging	1.00
R0690:Pcyox1	UTSW	6	86,371,424 (GRCm39)	missense	probably damaging	1.00
R4631:Pcyox1	UTSW	6	86,366,212 (GRCm39)	missense	possibly damaging	0.96
R4631:Pcyox1	UTSW	6	86,366,125 (GRCm39)	missense	probably benign	0.00
R4976:Pcyox1	UTSW	6	86,365,708 (GRCm39)	missense	probably damaging	1.00
R5227:Pcyox1	UTSW	6	86,368,726 (GRCm39)	missense	probably damaging	0.98
R5288:Pcyox1	UTSW	6	86,369,336 (GRCm39)	splice site	probably null
R5408:Pcyox1	UTSW	6	86,369,280 (GRCm39)	missense	probably damaging	1.00
R5862:Pcyox1	UTSW	6	86,368,656 (GRCm39)	critical splice donor site	probably null
R6002:Pcyox1	UTSW	6	86,369,164 (GRCm39)	missense	probably benign	0.02
R6123:Pcyox1	UTSW	6	86,365,910 (GRCm39)	missense	possibly damaging	0.88
R6766:Pcyox1	UTSW	6	86,371,390 (GRCm39)	critical splice donor site	probably null
R7047:Pcyox1	UTSW	6	86,365,891 (GRCm39)	missense	probably damaging	1.00
R7066:Pcyox1	UTSW	6	86,371,478 (GRCm39)	missense	probably damaging	1.00
R7139:Pcyox1	UTSW	6	86,371,519 (GRCm39)	missense	possibly damaging	0.50
R7268:Pcyox1	UTSW	6	86,368,713 (GRCm39)	missense	possibly damaging	0.69
R7445:Pcyox1	UTSW	6	86,368,661 (GRCm39)	missense	possibly damaging	0.83
R7870:Pcyox1	UTSW	6	86,369,323 (GRCm39)	missense	probably damaging	1.00
R8050:Pcyox1	UTSW	6	86,366,128 (GRCm39)	missense	possibly damaging	0.88
R8253:Pcyox1	UTSW	6	86,366,044 (GRCm39)	missense	probably benign
R9296:Pcyox1	UTSW	6	86,368,735 (GRCm39)	missense	probably damaging	1.00
R9301:Pcyox1	UTSW	6	86,369,241 (GRCm39)	missense	possibly damaging	0.63

Predicted Primers

PCR Primer
(F):5'- AGCCTTTCATACAGGTCGTC -3'
(R):5'- TCGGCAATTCTTGTCACTGATG -3'

Sequencing Primer
(F):5'- AGGTCGTCCTGATCAATCATG -3'
(R):5'- TCCATTGTGGCCTCTGTAAGACAG -3'

Posted On

2018-03-15