Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL01123:Matn1'

50941

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Matn1

Ensembl Gene

ENSMUSG00000040533

Gene Name

matrilin 1, cartilage matrix protein

Synonyms

Mat1, Crtm, CMP, matrilin-1

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

IGL01123

Quality Score

Status

Chromosome

Chromosomal Location

130944385-130955475 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 130950011 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Threonine at position 177 (I177T)

Ref Sequence

ENSEMBL: ENSMUSP00000099636 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000102576]

AlphaFold

P51942

Predicted Effect

possibly damaging
Transcript: ENSMUST00000102576
AA Change: I177T

PolyPhen 2 Score 0.721 (Sensitivity: 0.86; Specificity: 0.92)

SMART Domains

Protein: ENSMUSP00000099636
Gene: ENSMUSG00000040533
AA Change: I177T

Domain	Start	End	E-Value	Type
signal peptide	1	29	N/A	INTRINSIC
VWA	43	225	5.5e-52	SMART
EGF	230	267	2.79e-4	SMART
VWA	277	456	1.76e-59	SMART
Matrilin_ccoil	454	500	1.8e-18	SMART

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of von Willebrand factor A domain containing protein family. This family of proteins are thought to be involved in the formation of filamentous networks in the extracellular matrices of various tissues. Mutations of this gene have been associated with variety of inherited chondrodysplasias. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous null mutants are viable, fertile and display normal cartilage development and endochondral bone formation. Mice homozygous for one targeted allele show alterations in type II collagen fibrillogenesis and fibril organization, in the absence of skeletal defects. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 46 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2310057J18Rik	G	T	10: 28,973,938 (GRCm38)	D167E	probably damaging	Het
Aadat	A	T	8: 60,526,614 (GRCm38)	E170V	probably benign	Het
Acsf2	T	C	11: 94,570,450 (GRCm38)	E300G	probably benign	Het
Agbl3	C	T	6: 34,846,976 (GRCm38)	Q859*	probably null	Het
Arhgap11a	T	C	2: 113,834,773 (GRCm38)		probably benign	Het
Arhgef40	C	A	14: 51,994,346 (GRCm38)	Q730K	probably damaging	Het
Armc3	C	T	2: 19,201,805 (GRCm38)	P13L	possibly damaging	Het
B3gnt2	T	A	11: 22,836,490 (GRCm38)	T233S	probably benign	Het
Bnc1	G	A	7: 81,973,707 (GRCm38)	Q591*	probably null	Het
Bsn	A	T	9: 108,115,986 (GRCm38)	F856I	probably damaging	Het
CK137956	T	A	4: 127,935,850 (GRCm38)	T558S	probably benign	Het
Coq8b	G	A	7: 27,240,084 (GRCm38)	V180I	probably damaging	Het
Csmd1	A	T	8: 17,534,928 (GRCm38)	L16Q	possibly damaging	Het
Dhx37	A	G	5: 125,419,088 (GRCm38)	S769P	possibly damaging	Het
Diras1	T	A	10: 81,022,415 (GRCm38)	M1L	probably damaging	Het
Fam161b	A	G	12: 84,357,664 (GRCm38)	W81R	probably benign	Het
Fat4	A	T	3: 38,957,269 (GRCm38)	I2173L	probably benign	Het
Fbn2	T	C	18: 58,104,081 (GRCm38)	T617A	possibly damaging	Het
Gabrq	G	A	X: 72,836,833 (GRCm38)	D311N	probably benign	Het
Isl2	G	T	9: 55,545,462 (GRCm38)	G335C	probably damaging	Het
Kbtbd7	T	C	14: 79,428,612 (GRCm38)	V628A	probably damaging	Het
Kmt2d	T	C	15: 98,837,148 (GRCm38)	M5378V	unknown	Het
Lrrc23	G	T	6: 124,778,819 (GRCm38)	D75E	probably benign	Het
Mab21l3	G	A	3: 101,835,130 (GRCm38)	T38M	probably benign	Het
Mtor	T	C	4: 148,453,037 (GRCm38)	S60P	probably benign	Het
Naip6	T	C	13: 100,304,438 (GRCm38)	E278G	probably benign	Het
Nsun6	T	C	2: 15,048,978 (GRCm38)	I7V	possibly damaging	Het
Pabpc6	A	T	17: 9,668,147 (GRCm38)	S492T	probably benign	Het
Pakap	C	T	4: 57,757,627 (GRCm38)	Q188*	probably null	Het
Pom121	A	T	5: 135,391,706 (GRCm38)	V287D	unknown	Het
Ptprq	A	T	10: 107,686,218 (GRCm38)	F624Y	probably damaging	Het
Ptprr	A	G	10: 116,188,317 (GRCm38)	T178A	probably benign	Het
Pygm	A	G	19: 6,391,394 (GRCm38)	N473S	probably benign	Het
Ros1	A	T	10: 52,120,809 (GRCm38)	Y1256N	probably damaging	Het
Scpep1	T	C	11: 88,941,328 (GRCm38)	N192S	possibly damaging	Het
Serpina1f	A	G	12: 103,694,006 (GRCm38)	S6P	possibly damaging	Het
Sgca	T	A	11: 94,972,287 (GRCm38)	Q80L	probably damaging	Het
Skint6	A	G	4: 112,804,682 (GRCm38)	L1235P	possibly damaging	Het
Slc23a2	A	C	2: 132,056,816 (GRCm38)	N600K	probably benign	Het
Spata20	T	C	11: 94,483,395 (GRCm38)	T350A	probably benign	Het
Syne1	G	T	10: 5,344,921 (GRCm38)	Y1227*	probably null	Het
Unc13c	T	C	9: 73,933,197 (GRCm38)	Y124C	probably benign	Het
Usp40	G	A	1: 87,986,123 (GRCm38)	T416I	probably benign	Het
Vmn1r200	T	C	13: 22,395,401 (GRCm38)	W116R	probably benign	Het
Vps4a	T	C	8: 107,039,219 (GRCm38)		probably benign	Het
Zfyve16	A	G	13: 92,492,522 (GRCm38)	V1469A	probably damaging	Het

Other mutations in Matn1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00922:Matn1	APN	4	130,952,974 (GRCm38)	missense	probably benign
IGL01084:Matn1	APN	4	130,951,934 (GRCm38)	missense	probably benign	0.13
IGL01941:Matn1	APN	4	130,952,261 (GRCm38)	splice site	probably benign
IGL02289:Matn1	APN	4	130,951,835 (GRCm38)	splice site	probably benign
IGL02297:Matn1	APN	4	130,952,264 (GRCm38)	splice site	probably benign
IGL02488:Matn1	APN	4	130,944,493 (GRCm38)	missense	probably benign	0.20
IGL03493:Matn1	APN	4	130,949,998 (GRCm38)	missense	probably benign	0.37
R0282:Matn1	UTSW	4	130,945,927 (GRCm38)	missense	probably damaging	0.98
R0373:Matn1	UTSW	4	130,950,106 (GRCm38)	missense	probably damaging	1.00
R0384:Matn1	UTSW	4	130,944,476 (GRCm38)	missense	probably benign	0.20
R1457:Matn1	UTSW	4	130,950,019 (GRCm38)	missense	possibly damaging	0.89
R3955:Matn1	UTSW	4	130,951,415 (GRCm38)	critical splice donor site	probably null
R4014:Matn1	UTSW	4	130,951,947 (GRCm38)	missense	possibly damaging	0.69
R4801:Matn1	UTSW	4	130,950,025 (GRCm38)	missense	possibly damaging	0.82
R4802:Matn1	UTSW	4	130,950,025 (GRCm38)	missense	possibly damaging	0.82
R4887:Matn1	UTSW	4	130,952,114 (GRCm38)	missense	probably benign	0.13
R4961:Matn1	UTSW	4	130,952,923 (GRCm38)	missense	probably damaging	1.00
R6062:Matn1	UTSW	4	130,951,966 (GRCm38)	missense	probably benign	0.03
R7868:Matn1	UTSW	4	130,955,000 (GRCm38)	missense	probably damaging	1.00
R8343:Matn1	UTSW	4	130,945,989 (GRCm38)	nonsense	probably null
R8530:Matn1	UTSW	4	130,950,136 (GRCm38)	nonsense	probably null
R8726:Matn1	UTSW	4	130,952,203 (GRCm38)	missense	probably damaging	1.00
R9430:Matn1	UTSW	4	130,945,967 (GRCm38)	missense	probably damaging	1.00
Z1176:Matn1	UTSW	4	130,946,105 (GRCm38)	missense	probably damaging	0.98

Posted On

2013-06-21