Incidental Mutation 'R6305:Agbl3'
| ID |
509583 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Agbl3
|
| Ensembl Gene |
ENSMUSG00000038836 |
| Gene Name |
ATP/GTP binding protein-like 3 |
| Synonyms |
4930431N21Rik, 2900053G10Rik, 6530406M24Rik |
| MMRRC Submission |
044411-MU
|
| Accession Numbers |
|
| Essential gene? |
Non essential
(E-score: 0.000)
|
| Stock # |
R6305 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Validated
|
| Chromosome |
6 |
| Chromosomal Location |
34780432-34859459 bp(+) (GRCm38) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
G to A
at 34782210 bp (GRCm38)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Aspartic acid to Asparagine
at position 19
(D19N)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000116066
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000115009]
[ENSMUST00000115012]
[ENSMUST00000115014]
[ENSMUST00000115016]
[ENSMUST00000115017]
[ENSMUST00000135304]
[ENSMUST00000148834]
|
| AlphaFold |
Q8CDP0 |
| Predicted Effect |
unknown
Transcript: ENSMUST00000115009
AA Change: D19N
|
| Predicted Effect |
unknown
Transcript: ENSMUST00000115012
AA Change: D19N
|
| Predicted Effect |
unknown
Transcript: ENSMUST00000115014
AA Change: D19N
|
| SMART Domains |
Protein: ENSMUSP00000110666
Gene: ENSMUSG00000038836
AA Change: D19N
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
2 |
25 |
N/A |
INTRINSIC |
|
| Predicted Effect |
unknown
Transcript: ENSMUST00000115016
AA Change: D19N
|
| SMART Domains |
Protein: ENSMUSP00000110668
Gene: ENSMUSG00000038836
AA Change: D19N
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
2 |
25 |
N/A |
INTRINSIC |
|
Pfam:Peptidase_M14
|
314 |
563 |
2.7e-19 |
PFAM |
|
low complexity region
|
614 |
629 |
N/A |
INTRINSIC |
|
| Predicted Effect |
unknown
Transcript: ENSMUST00000115017
AA Change: D19N
|
| SMART Domains |
Protein: ENSMUSP00000110669
Gene: ENSMUSG00000038836
AA Change: D19N
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
2 |
25 |
N/A |
INTRINSIC |
|
Pfam:Peptidase_M14
|
309 |
560 |
1e-33 |
PFAM |
|
low complexity region
|
609 |
624 |
N/A |
INTRINSIC |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000119745
|
| Predicted Effect |
unknown
Transcript: ENSMUST00000135304
AA Change: D19N
|
| SMART Domains |
Protein: ENSMUSP00000118303
Gene: ENSMUSG00000038836
AA Change: D19N
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
2 |
25 |
N/A |
INTRINSIC |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000143474
|
| Predicted Effect |
unknown
Transcript: ENSMUST00000148834
AA Change: D19N
|
| SMART Domains |
Protein: ENSMUSP00000116066
Gene: ENSMUSG00000038836
AA Change: D19N
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
2 |
25 |
N/A |
INTRINSIC |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000155726
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000155890
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000202017
|
| Meta Mutation Damage Score |
0.1148 |
| Coding Region Coverage |
- 1x: 100.0%
- 3x: 99.9%
- 10x: 99.5%
- 20x: 98.5%
|
| Validation Efficiency |
97% (61/63) |
| MGI Phenotype |
PHENOTYPE: Homozygous mice for a targeted allele are viable and fertile. Mice homozygous for a knock-out allele exhibit normal response to herpes simplex virus (HSV) and vaccinia virus (VACV) infection. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 56 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 1110002E22Rik |
T |
C |
3: 138,067,980 (GRCm38) |
S977P |
probably damaging |
Het |
| Abraxas2 |
G |
A |
7: 132,874,965 (GRCm38) |
A145T |
probably damaging |
Het |
| Adcy6 |
T |
A |
15: 98,598,645 (GRCm38) |
I550L |
probably benign |
Het |
| Ankdd1a |
C |
T |
9: 65,508,061 (GRCm38) |
A227T |
possibly damaging |
Het |
| Arhgap39 |
T |
A |
15: 76,737,702 (GRCm38) |
D233V |
probably benign |
Het |
| Bcl9 |
G |
A |
3: 97,205,938 (GRCm38) |
P1067L |
possibly damaging |
Het |
| C130060K24Rik |
A |
T |
6: 65,454,991 (GRCm38) |
M293L |
probably benign |
Het |
| Casd1 |
C |
T |
6: 4,641,892 (GRCm38) |
T723I |
probably damaging |
Het |
| Cd209g |
T |
A |
8: 4,136,809 (GRCm38) |
I118N |
probably benign |
Het |
| Cdh24 |
A |
T |
14: 54,632,356 (GRCm38) |
D701E |
possibly damaging |
Het |
| Chd9 |
C |
T |
8: 91,030,546 (GRCm38) |
P1858S |
possibly damaging |
Het |
| Csnk1g3 |
T |
A |
18: 53,932,312 (GRCm38) |
Y322* |
probably null |
Het |
| Cyp2f2 |
G |
A |
7: 27,129,224 (GRCm38) |
R173H |
probably damaging |
Het |
| D130043K22Rik |
T |
C |
13: 24,885,685 (GRCm38) |
F909S |
probably damaging |
Het |
| Dll4 |
T |
A |
2: 119,330,657 (GRCm38) |
S299T |
probably benign |
Het |
| Dnase1l1 |
C |
T |
X: 74,277,038 (GRCm38) |
|
probably null |
Homo |
| Dsg4 |
T |
A |
18: 20,449,790 (GRCm38) |
Y162N |
probably damaging |
Het |
| Enpp1 |
T |
C |
10: 24,641,882 (GRCm38) |
Y882C |
probably damaging |
Het |
| Fam129a |
T |
C |
1: 151,695,718 (GRCm38) |
L248P |
probably damaging |
Het |
| Fbxw7 |
T |
A |
3: 84,976,323 (GRCm38) |
N520K |
probably damaging |
Het |
| Galc |
C |
T |
12: 98,259,290 (GRCm38) |
A14T |
possibly damaging |
Het |
| Gm11492 |
C |
T |
11: 87,567,319 (GRCm38) |
T173M |
probably benign |
Het |
| Grm7 |
G |
A |
6: 111,358,665 (GRCm38) |
R679Q |
probably damaging |
Het |
| Hnrnpdl |
T |
C |
5: 100,038,658 (GRCm38) |
|
probably benign |
Het |
| Il12a |
A |
T |
3: 68,694,178 (GRCm38) |
K77N |
possibly damaging |
Het |
| Il17rd |
C |
T |
14: 27,095,942 (GRCm38) |
S196L |
possibly damaging |
Het |
| Kcnv2 |
T |
C |
19: 27,323,837 (GRCm38) |
F363L |
probably benign |
Het |
| Lair1 |
A |
G |
7: 4,010,728 (GRCm38) |
|
probably null |
Het |
| Lrit3 |
G |
A |
3: 129,800,460 (GRCm38) |
T156I |
probably damaging |
Het |
| Me2 |
T |
A |
18: 73,791,844 (GRCm38) |
R267S |
probably benign |
Het |
| Mga |
T |
C |
2: 119,947,698 (GRCm38) |
V1908A |
probably benign |
Het |
| Mylk3 |
T |
A |
8: 85,350,419 (GRCm38) |
I463F |
probably damaging |
Het |
| Neb |
G |
A |
2: 52,251,763 (GRCm38) |
R75* |
probably null |
Het |
| Olfr1080 |
A |
G |
2: 86,553,495 (GRCm38) |
S210P |
possibly damaging |
Het |
| Olfr339 |
T |
A |
2: 36,421,622 (GRCm38) |
S75T |
probably damaging |
Het |
| Olfr469 |
T |
G |
7: 107,822,657 (GRCm38) |
T271P |
probably benign |
Het |
| Olfr516 |
C |
T |
7: 108,845,554 (GRCm38) |
G152D |
possibly damaging |
Het |
| Olfr883 |
ATTGCTGTTT |
ATTGCTGTTTGCTGTTT |
9: 38,026,540 (GRCm38) |
|
probably null |
Het |
| Olfr883 |
TG |
TGGTGTTGG |
9: 38,026,542 (GRCm38) |
|
probably null |
Het |
| Pfas |
A |
G |
11: 69,001,197 (GRCm38) |
S162P |
possibly damaging |
Het |
| Pip5k1c |
T |
A |
10: 81,315,934 (GRCm38) |
V654E |
probably benign |
Het |
| Plxdc1 |
C |
A |
11: 97,938,590 (GRCm38) |
C318F |
probably damaging |
Het |
| Rbm8a2 |
T |
C |
1: 175,978,746 (GRCm38) |
D55G |
probably benign |
Het |
| Rexo5 |
A |
T |
7: 119,828,125 (GRCm38) |
K419N |
probably damaging |
Het |
| Slc13a2 |
CGTTATCTGT |
CGT |
11: 78,403,480 (GRCm38) |
|
probably benign |
Het |
| Slc24a4 |
C |
A |
12: 102,222,101 (GRCm38) |
T151K |
possibly damaging |
Het |
| Slc6a15 |
A |
T |
10: 103,389,170 (GRCm38) |
I40F |
probably benign |
Het |
| Slc6a21 |
T |
C |
7: 45,280,604 (GRCm38) |
V172A |
possibly damaging |
Het |
| Thrap3 |
A |
G |
4: 126,180,807 (GRCm38) |
|
probably benign |
Het |
| Tm9sf3 |
A |
G |
19: 41,245,442 (GRCm38) |
|
probably null |
Het |
| Trp53 |
A |
T |
11: 69,588,707 (GRCm38) |
H211L |
probably damaging |
Het |
| Ttc21b |
A |
T |
2: 66,188,270 (GRCm38) |
N1264K |
probably damaging |
Het |
| Vmn1r120 |
A |
T |
7: 21,053,606 (GRCm38) |
V60E |
possibly damaging |
Het |
| Ylpm1 |
A |
G |
12: 85,030,545 (GRCm38) |
E890G |
probably damaging |
Het |
| Zfp647 |
G |
A |
15: 76,912,085 (GRCm38) |
P125L |
probably damaging |
Het |
| Zfp934 |
T |
C |
13: 62,518,556 (GRCm38) |
Y102C |
probably damaging |
Het |
|
| Other mutations in Agbl3 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00336:Agbl3
|
APN |
6 |
34,846,836 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL00835:Agbl3
|
APN |
6 |
34,799,732 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL00840:Agbl3
|
APN |
6 |
34,799,159 (GRCm38) |
missense |
possibly damaging |
0.95 |
|
IGL01090:Agbl3
|
APN |
6 |
34,799,887 (GRCm38) |
missense |
probably benign |
0.40 |
|
IGL01123:Agbl3
|
APN |
6 |
34,846,976 (GRCm38) |
nonsense |
probably null |
|
|
IGL01707:Agbl3
|
APN |
6 |
34,839,454 (GRCm38) |
missense |
possibly damaging |
0.78 |
|
IGL01728:Agbl3
|
APN |
6 |
34,782,157 (GRCm38) |
start codon destroyed |
probably null |
|
|
IGL02335:Agbl3
|
APN |
6 |
34,799,750 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL02420:Agbl3
|
APN |
6 |
34,785,307 (GRCm38) |
missense |
possibly damaging |
0.47 |
|
IGL02551:Agbl3
|
APN |
6 |
34,823,071 (GRCm38) |
missense |
possibly damaging |
0.88 |
|
IGL02974:Agbl3
|
APN |
6 |
34,799,822 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL03167:Agbl3
|
APN |
6 |
34,857,659 (GRCm38) |
missense |
possibly damaging |
0.92 |
|
IGL03182:Agbl3
|
APN |
6 |
34,803,500 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R0044:Agbl3
|
UTSW |
6 |
34,799,899 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R0499:Agbl3
|
UTSW |
6 |
34,839,335 (GRCm38) |
missense |
probably benign |
|
|
R0639:Agbl3
|
UTSW |
6 |
34,799,705 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R0850:Agbl3
|
UTSW |
6 |
34,799,204 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1004:Agbl3
|
UTSW |
6 |
34,803,451 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R1080:Agbl3
|
UTSW |
6 |
34,828,235 (GRCm38) |
missense |
probably benign |
0.14 |
|
R1589:Agbl3
|
UTSW |
6 |
34,857,517 (GRCm38) |
missense |
possibly damaging |
0.77 |
|
R2361:Agbl3
|
UTSW |
6 |
34,832,505 (GRCm38) |
missense |
possibly damaging |
0.87 |
|
R2495:Agbl3
|
UTSW |
6 |
34,846,764 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R3236:Agbl3
|
UTSW |
6 |
34,823,087 (GRCm38) |
splice site |
probably null |
|
|
R3237:Agbl3
|
UTSW |
6 |
34,823,087 (GRCm38) |
splice site |
probably null |
|
|
R3420:Agbl3
|
UTSW |
6 |
34,793,965 (GRCm38) |
missense |
probably benign |
0.36 |
|
R3421:Agbl3
|
UTSW |
6 |
34,793,965 (GRCm38) |
missense |
probably benign |
0.36 |
|
R3422:Agbl3
|
UTSW |
6 |
34,793,965 (GRCm38) |
missense |
probably benign |
0.36 |
|
R3810:Agbl3
|
UTSW |
6 |
34,799,729 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R3811:Agbl3
|
UTSW |
6 |
34,799,729 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4059:Agbl3
|
UTSW |
6 |
34,846,899 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4499:Agbl3
|
UTSW |
6 |
34,857,598 (GRCm38) |
missense |
probably benign |
0.00 |
|
R4687:Agbl3
|
UTSW |
6 |
34,798,326 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4854:Agbl3
|
UTSW |
6 |
34,785,284 (GRCm38) |
missense |
probably damaging |
0.97 |
|
R5354:Agbl3
|
UTSW |
6 |
34,814,752 (GRCm38) |
missense |
probably benign |
0.03 |
|
R5386:Agbl3
|
UTSW |
6 |
34,799,196 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5897:Agbl3
|
UTSW |
6 |
34,803,573 (GRCm38) |
missense |
probably benign |
0.21 |
|
R6018:Agbl3
|
UTSW |
6 |
34,799,255 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6148:Agbl3
|
UTSW |
6 |
34,857,753 (GRCm38) |
missense |
possibly damaging |
0.87 |
|
R6525:Agbl3
|
UTSW |
6 |
34,803,594 (GRCm38) |
nonsense |
probably null |
|
|
R6546:Agbl3
|
UTSW |
6 |
34,799,299 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6743:Agbl3
|
UTSW |
6 |
34,846,953 (GRCm38) |
missense |
probably benign |
0.03 |
|
R6986:Agbl3
|
UTSW |
6 |
34,839,452 (GRCm38) |
missense |
probably benign |
0.42 |
|
R7023:Agbl3
|
UTSW |
6 |
34,814,769 (GRCm38) |
missense |
probably benign |
0.02 |
|
R7411:Agbl3
|
UTSW |
6 |
34,814,819 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R7469:Agbl3
|
UTSW |
6 |
34,814,414 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7631:Agbl3
|
UTSW |
6 |
34,857,671 (GRCm38) |
missense |
possibly damaging |
0.95 |
|
R7658:Agbl3
|
UTSW |
6 |
34,832,508 (GRCm38) |
missense |
probably benign |
0.11 |
|
R7743:Agbl3
|
UTSW |
6 |
34,846,830 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7801:Agbl3
|
UTSW |
6 |
34,839,365 (GRCm38) |
missense |
probably benign |
0.00 |
|
R8033:Agbl3
|
UTSW |
6 |
34,839,494 (GRCm38) |
missense |
possibly damaging |
0.95 |
|
R8203:Agbl3
|
UTSW |
6 |
34,799,479 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R8769:Agbl3
|
UTSW |
6 |
34,857,614 (GRCm38) |
missense |
probably damaging |
0.96 |
|
R9072:Agbl3
|
UTSW |
6 |
34,799,452 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R9073:Agbl3
|
UTSW |
6 |
34,799,452 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R9210:Agbl3
|
UTSW |
6 |
34,798,242 (GRCm38) |
missense |
probably damaging |
0.98 |
|
R9255:Agbl3
|
UTSW |
6 |
34,812,905 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R9536:Agbl3
|
UTSW |
6 |
34,846,926 (GRCm38) |
missense |
probably benign |
|
|
R9560:Agbl3
|
UTSW |
6 |
34,846,908 (GRCm38) |
missense |
possibly damaging |
0.94 |
|
R9662:Agbl3
|
UTSW |
6 |
34,832,533 (GRCm38) |
nonsense |
probably null |
|
|
RF014:Agbl3
|
UTSW |
6 |
34,799,358 (GRCm38) |
missense |
possibly damaging |
0.53 |
|
Z1177:Agbl3
|
UTSW |
6 |
34,799,408 (GRCm38) |
missense |
probably damaging |
1.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- AGCTTGCTTTGTAGTAACGGATAG -3'
(R):5'- TTTCTAGACAGGGCACATTACAC -3'
Sequencing Primer
(F):5'- GTTTAGTTTTCAGAGATCTGTCACTC -3'
(R):5'- GGGCACATTACACAATACATTTTTC -3'
|
| Posted On |
2018-04-02 |
Incidental Mutation