Incidental Mutation 'U24488:Zcrb1'
ID509901
Institutional Source Beutler Lab
Gene Symbol Zcrb1
Ensembl Gene ENSMUSG00000022635
Gene Namezinc finger CCHC-type and RNA binding motif 1
Synonyms
Accession Numbers
Is this an essential gene? Probably essential (E-score: 0.911) question?
Stock #U24488 (G0')
Quality Score225.009
Status Not validated
Chromosome15
Chromosomal Location93386097-93398334 bp(-) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) A to T at 93387634 bp
ZygosityHeterozygous
Amino Acid Change Serine to Arginine at position 155 (S155R)
Ref Sequence ENSEMBL: ENSMUSP00000124549 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000076070] [ENSMUST00000161409] [ENSMUST00000162160]
Predicted Effect probably damaging
Transcript: ENSMUST00000076070
AA Change: S155R

PolyPhen 2 Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)
SMART Domains Protein: ENSMUSP00000075441
Gene: ENSMUSG00000022635
AA Change: S155R

DomainStartEndE-ValueType
RRM 11 84 3.3e-24 SMART
ZnF_C2HC 106 122 3.83e-3 SMART
low complexity region 125 160 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000159105
Predicted Effect noncoding transcript
Transcript: ENSMUST00000159723
Predicted Effect noncoding transcript
Transcript: ENSMUST00000160407
Predicted Effect probably benign
Transcript: ENSMUST00000161409
SMART Domains Protein: ENSMUSP00000125442
Gene: ENSMUSG00000022635

DomainStartEndE-ValueType
Pfam:RRM_1 12 45 8.1e-9 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000161955
Predicted Effect probably damaging
Transcript: ENSMUST00000162160
AA Change: S155R

PolyPhen 2 Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)
SMART Domains Protein: ENSMUSP00000124549
Gene: ENSMUSG00000022635
AA Change: S155R

DomainStartEndE-ValueType
RRM 11 84 3.3e-24 SMART
ZnF_C2HC 106 122 3.83e-3 SMART
low complexity region 125 160 N/A INTRINSIC
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.8%
  • 10x: 99.3%
  • 20x: 98.0%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Pre-mRNA splicing is catalyzed by the spliceosome. U12-type spliceosome binds U12-type pre-mRNAs and recognizes the 5' splice site and branch-point sequence. U11 and U12 snRNPs are components of U12-type spliceosome and function as a molecular bridge connecting both ends of the intron. The protein encoded by this gene contains a RNA recognition motif. It was identified as one of the protein components of U11/U12 snRNPs. This protein and many other U11/U12 snRNP proteins are highly conserved in organisms known to contain U12-type introns. These proteins have been shown to be essential for cell viability, suggesting the key roles in U12-type splicing. [provided by RefSeq, Jul 2008]
Allele List at MGI
Other mutations in this stock
Total: 62 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
2410089E03Rik G T 15: 8,182,210 G345C probably damaging Het
AF529169 C A 9: 89,603,047 G99V probably damaging Het
Ankrd36 A G 11: 5,630,772 Y922C probably damaging Het
Arhgef40 A G 14: 51,998,216 T1185A probably benign Het
Atf7ip2 A G 16: 10,204,673 N72S probably damaging Het
Carmil3 A G 14: 55,497,179 D455G probably benign Het
Ccdc171 A T 4: 83,661,717 E567V probably damaging Het
Chmp1b T A 18: 67,205,874 L125Q probably damaging Het
Cnr1 T A 4: 33,944,927 N438K probably benign Het
Csmd3 G A 15: 47,710,399 T2091M probably damaging Het
Cyp4a29 A T 4: 115,251,007 H342L possibly damaging Het
D430042O09Rik A T 7: 125,770,681 D147V probably damaging Het
Dnah10 G A 5: 124,813,980 D3212N probably damaging Het
Dnah2 G A 11: 69,483,822 T1447I probably damaging Het
F11 A G 8: 45,242,312 S540P probably benign Het
Fam71d A T 12: 78,715,037 K158N probably damaging Het
Fcrl6 T A 1: 172,598,870 H120L probably damaging Het
Frmd6 T C 12: 70,893,879 S433P probably damaging Het
Fundc1 G T X: 17,568,103 A64E probably damaging Het
Grid1 A G 14: 35,580,577 E933G probably benign Het
Haus5 C T 7: 30,658,976 W298* probably null Het
Hoxb3 C A 11: 96,344,630 Q128K probably benign Het
Il6st C T 13: 112,494,634 T369M possibly damaging Het
Itk A C 11: 46,338,144 M403R probably damaging Het
Kif2c T C 4: 117,182,442 Q17R probably benign Het
Kifap3 T C 1: 163,783,035 I28T possibly damaging Het
Kit A T 5: 75,623,014 R384* probably null Het
Ksr1 T A 11: 79,047,441 I42F probably damaging Het
Lhcgr T A 17: 88,772,085 probably null Het
Lrrc36 C T 8: 105,449,752 H253Y probably benign Het
Mad1l1 T A 5: 140,315,085 N19Y probably damaging Het
Marf1 A T 16: 14,132,366 L1022* probably null Het
Mical3 T G 6: 121,001,496 Q225P possibly damaging Het
Myt1l T A 12: 29,826,896 M182K unknown Het
Nepro A G 16: 44,734,586 T342A probably benign Het
Nlrp5 A T 7: 23,418,228 D459V possibly damaging Het
Nrcam C T 12: 44,537,259 P39S probably damaging Het
Olfr694 A T 7: 106,689,089 I214N probably damaging Het
Ostm1 A G 10: 42,679,231 D83G possibly damaging Het
Otoa A T 7: 121,118,540 probably null Het
Pi4ka A G 16: 17,325,176 I824T probably damaging Het
Plec C T 15: 76,177,730 R2534H probably benign Het
Plin2 A G 4: 86,662,077 V60A probably damaging Het
Rps6ka4 A G 19: 6,832,356 L367P probably damaging Het
Senp7 A G 16: 56,184,819 N912D probably damaging Het
Slc25a21 G T 12: 56,738,497 N198K possibly damaging Het
Slc4a10 A G 2: 62,046,658 D5G probably benign Het
Tex16 T C X: 112,119,118 V438A probably benign Het
Tmem37 T C 1: 120,067,954 Y131C probably benign Het
Top2a A C 11: 99,022,426 M60R probably damaging Het
Ush2a C T 1: 188,430,766 T1015I probably damaging Het
Vmn1r172 A T 7: 23,659,746 I19F probably benign Het
Vmn1r230 A C 17: 20,846,752 I68L probably benign Het
Vmn2r45 A C 7: 8,472,362 C556G probably damaging Het
Vmn2r54 A G 7: 12,615,429 I742T possibly damaging Het
Vps13c A G 9: 67,905,916 K960E probably benign Het
Wdcp T A 12: 4,850,405 V87E probably damaging Het
Wiz C T 17: 32,387,675 E29K probably damaging Het
Wnk3 C T X: 151,209,460 T298I probably damaging Het
Yif1b A C 7: 29,244,169 Q56P probably benign Het
Zbtb25 A G 12: 76,349,240 W403R probably benign Het
Zmym4 A T 4: 126,925,660 I150K possibly damaging Het
Other mutations in Zcrb1
AlleleSourceChrCoordTypePredicted EffectPPH Score
R0894:Zcrb1 UTSW 15 93397157 unclassified probably benign
R0926:Zcrb1 UTSW 15 93391528 missense probably damaging 1.00
R2135:Zcrb1 UTSW 15 93397186 missense probably damaging 1.00
R5174:Zcrb1 UTSW 15 93387575 critical splice donor site probably null
R5975:Zcrb1 UTSW 15 93395615 missense probably benign 0.03
R6058:Zcrb1 UTSW 15 93387582 missense probably benign
R7807:Zcrb1 UTSW 15 93391121 missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- AGACTAAGCTGCACACCGTG -3'
(R):5'- TGGACACTTAAGTTATGCCTGTCC -3'

Sequencing Primer
(F):5'- GGCACACCATTTCCTTTCTTCCTG -3'
(R):5'- CTGTCCTAAAAACATGCTTGGCGAG -3'
Posted On2018-04-02