Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL01063:Trim56'

51016

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Trim56

Ensembl Gene

ENSMUSG00000043279

Gene Name

tripartite motif-containing 56

Synonyms

A130009K11Rik, RNF109, LOC384309

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

IGL01063

Quality Score

Status

Chromosome

Chromosomal Location

137140140-137145313 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 137143354 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Aspartic acid at position 54 (V54D)

Ref Sequence

ENSEMBL: ENSMUSP00000058109 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000054384] [ENSMUST00000152207]

AlphaFold

no structure available at present

Predicted Effect

possibly damaging
Transcript: ENSMUST00000054384
AA Change: V54D

PolyPhen 2 Score 0.953 (Sensitivity: 0.79; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000058109
Gene: ENSMUSG00000043279
AA Change: V54D

Domain	Start	End	E-Value	Type
RING	21	59	9.09e-8	SMART
low complexity region	118	133	N/A	INTRINSIC
Pfam:zf-B_box	164	205	1.9e-7	PFAM
coiled coil region	257	291	N/A	INTRINSIC
low complexity region	302	309	N/A	INTRINSIC
low complexity region	381	399	N/A	INTRINSIC
low complexity region	432	447	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000152207
AA Change: V54D

PolyPhen 2 Score 0.314 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000117874
Gene: ENSMUSG00000043279
AA Change: V54D

Domain	Start	End	E-Value	Type
RING	21	59	9.09e-8	SMART
low complexity region	118	133	N/A	INTRINSIC
Pfam:zf-B_box	164	205	2.4e-9	PFAM

Coding Region Coverage

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 47 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1110038F14Rik	G	A	15: 76,834,475 (GRCm39)	V124I	probably damaging	Het
4930444P10Rik	A	T	1: 16,148,870 (GRCm39)	L61*	probably null	Het
Abca7	T	C	10: 79,847,131 (GRCm39)	I1705T	probably damaging	Het
Ablim1	T	A	19: 57,049,760 (GRCm39)	I393F	probably damaging	Het
Adamts5	A	G	16: 85,696,722 (GRCm39)	L145P	probably damaging	Het
Ano6	T	C	15: 95,846,310 (GRCm39)	I537T	probably damaging	Het
AU018091	T	C	7: 3,212,153 (GRCm39)	I190V	possibly damaging	Het
Camk1	T	A	6: 113,315,333 (GRCm39)	D155V	probably damaging	Het
Cdh6	A	C	15: 13,064,581 (GRCm39)	I103S	probably damaging	Het
Cntnap1	A	G	11: 101,072,614 (GRCm39)	D537G	probably benign	Het
Col6a3	T	C	1: 90,730,054 (GRCm39)	K1144E	probably damaging	Het
Cpeb1	T	A	7: 81,021,929 (GRCm39)	E71D	probably benign	Het
Cps1	T	C	1: 67,234,325 (GRCm39)	L904P	possibly damaging	Het
Cyfip1	T	A	7: 55,553,958 (GRCm39)	F700I	probably damaging	Het
Dmp1	G	A	5: 104,354,965 (GRCm39)	M1I	probably null	Het
Efcab6	A	T	15: 83,938,713 (GRCm39)	M1K	probably null	Het
Extl2	A	T	3: 115,821,131 (GRCm39)	H312L	possibly damaging	Het
Fat4	C	A	3: 38,944,728 (GRCm39)	A1207D	possibly damaging	Het
Flnb	T	C	14: 7,926,518 (GRCm38)		probably benign	Het
Hdac10	G	T	15: 89,008,071 (GRCm39)	A593E	possibly damaging	Het
Hdhd2	T	C	18: 77,052,969 (GRCm39)		probably null	Het
Kcnq2	A	G	2: 180,751,582 (GRCm39)		probably benign	Het
Kdm7a	A	G	6: 39,142,064 (GRCm39)	F405L	probably damaging	Het
Lypd6b	C	A	2: 49,833,642 (GRCm39)		probably benign	Het
Mki67	A	T	7: 135,296,651 (GRCm39)	D2794E	possibly damaging	Het
Mtmr14	T	A	6: 113,243,287 (GRCm39)	F40I	probably damaging	Het
Or2y3	G	T	17: 38,393,544 (GRCm39)	S108R	possibly damaging	Het
Or5p55	A	T	7: 107,566,741 (GRCm39)	I46F	probably damaging	Het
Or6d13	T	A	6: 116,517,968 (GRCm39)	C185S	probably damaging	Het
Or6x1	A	T	9: 40,099,052 (GRCm39)	I214F	probably benign	Het
Ppargc1a	C	A	5: 51,631,664 (GRCm39)	V322L	probably benign	Het
Ppfibp1	T	A	6: 146,931,195 (GRCm39)	M917K	probably benign	Het
Prkg2	C	T	5: 99,117,795 (GRCm39)		probably null	Het
Rfx4	A	G	10: 84,704,246 (GRCm39)	E296G	possibly damaging	Het
Rfx8	T	A	1: 39,722,110 (GRCm39)	K292*	probably null	Het
Scamp3	C	A	3: 89,084,973 (GRCm39)		probably benign	Het
Scn4a	A	T	11: 106,221,190 (GRCm39)	I823N	possibly damaging	Het
Sdk2	A	G	11: 113,721,668 (GRCm39)	V1316A	probably damaging	Het
Setd2	T	C	9: 110,402,741 (GRCm39)	V1794A	probably damaging	Het
Stard8	G	T	X: 98,116,694 (GRCm39)	R983L	probably damaging	Het
Tbc1d23	A	T	16: 57,013,038 (GRCm39)	D311E	probably benign	Het
Tex21	T	C	12: 76,245,592 (GRCm39)	H568R	probably benign	Het
Tex35	T	C	1: 156,932,667 (GRCm39)		probably benign	Het
Tgs1	T	A	4: 3,591,292 (GRCm39)	F442I	possibly damaging	Het
Traf2	C	A	2: 25,414,931 (GRCm39)	C303F	probably benign	Het
Yars2	C	T	16: 16,124,406 (GRCm39)	R338*	probably null	Het
Zfp668	A	T	7: 127,465,454 (GRCm39)	C577S	probably damaging	Het

Other mutations in Trim56

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02604:Trim56	APN	5	137,141,930 (GRCm39)	missense	probably damaging	0.98
IGL02653:Trim56	APN	5	137,141,760 (GRCm39)	missense	probably damaging	1.00
IGL03069:Trim56	APN	5	137,142,616 (GRCm39)	missense	probably damaging	0.99
R0711:Trim56	UTSW	5	137,141,846 (GRCm39)	missense	probably benign	0.00
R1167:Trim56	UTSW	5	137,141,374 (GRCm39)	missense	probably damaging	0.98
R1470:Trim56	UTSW	5	137,142,017 (GRCm39)	missense	probably damaging	0.99
R1470:Trim56	UTSW	5	137,142,017 (GRCm39)	missense	probably damaging	0.99
R1508:Trim56	UTSW	5	137,142,791 (GRCm39)	missense	probably benign	0.00
R1791:Trim56	UTSW	5	137,143,252 (GRCm39)	missense	probably damaging	1.00
R2484:Trim56	UTSW	5	137,141,528 (GRCm39)	missense	possibly damaging	0.95
R4274:Trim56	UTSW	5	137,142,541 (GRCm39)	missense	probably damaging	1.00
R4579:Trim56	UTSW	5	137,142,918 (GRCm39)	missense	possibly damaging	0.60
R4766:Trim56	UTSW	5	137,141,579 (GRCm39)	missense	probably benign	0.07
R4932:Trim56	UTSW	5	137,143,343 (GRCm39)	missense	probably damaging	1.00
R5117:Trim56	UTSW	5	137,142,832 (GRCm39)	missense	probably benign	0.13
R6444:Trim56	UTSW	5	137,141,470 (GRCm39)	missense	probably damaging	0.99
R6747:Trim56	UTSW	5	137,143,375 (GRCm39)	missense	probably damaging	1.00
R6962:Trim56	UTSW	5	137,141,501 (GRCm39)	missense	probably damaging	0.97
R7115:Trim56	UTSW	5	137,142,514 (GRCm39)	missense	probably damaging	0.98
R7266:Trim56	UTSW	5	137,143,097 (GRCm39)	missense	probably damaging	0.98
R7706:Trim56	UTSW	5	137,143,510 (GRCm39)	missense	probably benign	0.00
R8347:Trim56	UTSW	5	137,141,446 (GRCm39)	missense	probably damaging	1.00
R8492:Trim56	UTSW	5	137,141,783 (GRCm39)	missense	probably benign
R8695:Trim56	UTSW	5	137,143,429 (GRCm39)	missense	probably benign	0.15
R9152:Trim56	UTSW	5	137,143,387 (GRCm39)	missense	probably benign	0.06
R9166:Trim56	UTSW	5	137,142,751 (GRCm39)	missense	probably damaging	1.00
R9232:Trim56	UTSW	5	137,141,632 (GRCm39)	missense	probably damaging	1.00
X0019:Trim56	UTSW	5	137,143,064 (GRCm39)	missense	probably damaging	1.00

Posted On

2013-06-21