Mutagenetix > Incidental Mutation

Incidental Mutation 'R6331:Sdad1'

510907

Institutional Source

Beutler Lab

Gene Symbol

Sdad1

Ensembl Gene

ENSMUSG00000029415

Gene Name

SDA1 domain containing 1

Synonyms

MMRRC Submission

044485-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.968) question?

Stock #

R6331 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

92431869-92457883 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 92451789 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 144 (D144G)

Ref Sequence

ENSEMBL: ENSMUSP00000144446 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000031364] [ENSMUST00000201143] [ENSMUST00000202870]

AlphaFold

no structure available at present

Predicted Effect

probably damaging
Transcript: ENSMUST00000031364
AA Change: D144G

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000031364
Gene: ENSMUSG00000029415
AA Change: D144G

Domain	Start	End	E-Value	Type
Pfam:NUC130_3NT	62	113	3.3e-28	PFAM
low complexity region	116	126	N/A	INTRINSIC
low complexity region	146	163	N/A	INTRINSIC
low complexity region	224	239	N/A	INTRINSIC
low complexity region	254	278	N/A	INTRINSIC
Pfam:SDA1	409	532	2.4e-41	PFAM
Pfam:SDA1	519	685	2.8e-36	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000157998

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000201084

Predicted Effect

probably damaging
Transcript: ENSMUST00000201143
AA Change: D144G

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000144446
Gene: ENSMUSG00000029415
AA Change: D144G

Domain	Start	End	E-Value	Type
Pfam:NUC130_3NT	62	113	5.3e-24	PFAM
low complexity region	116	126	N/A	INTRINSIC
low complexity region	146	163	N/A	INTRINSIC
low complexity region	224	239	N/A	INTRINSIC
low complexity region	254	277	N/A	INTRINSIC
Pfam:SDA1	408	531	3.9e-37	PFAM
Pfam:SDA1	518	684	4.6e-32	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000201532

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000202604

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000202680

Predicted Effect

probably benign
Transcript: ENSMUST00000202870

Meta Mutation Damage Score

0.8491

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.3%
20x: 97.8%

Validation Efficiency

100% (66/66)

Allele List at MGI

Other mutations in this stock

Total: 66 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A2ml1	T	C	6: 128,529,199 (GRCm39)	D981G	probably damaging	Het
Abcc1	C	A	16: 14,282,920 (GRCm39)	A1132D	probably damaging	Het
Adamts12	A	G	15: 11,241,519 (GRCm39)	T364A	probably damaging	Het
Ahnak	A	T	19: 8,983,989 (GRCm39)	M1758L	probably benign	Het
Ak9	T	C	10: 41,258,825 (GRCm39)	V774A	probably damaging	Het
Ash1l	A	G	3: 88,915,172 (GRCm39)	E1934G	probably benign	Het
Atp2b2	C	T	6: 113,774,092 (GRCm39)	A341T	probably benign	Het
Bach2	G	T	4: 32,238,816 (GRCm39)		probably benign	Het
Bltp3a	T	C	17: 28,112,175 (GRCm39)	I1150T	probably benign	Het
Brd10	C	T	19: 29,695,147 (GRCm39)	V1449I	probably benign	Het
Ccdc102a	T	C	8: 95,638,144 (GRCm39)	T241A	probably benign	Het
Chd5	G	T	4: 152,466,865 (GRCm39)	R1627S	probably benign	Het
Clint1	T	C	11: 45,785,908 (GRCm39)	S322P	probably benign	Het
Dapk1	T	A	13: 60,877,256 (GRCm39)	C498*	probably null	Het
Diaph3	T	G	14: 87,103,976 (GRCm39)	S803R	probably damaging	Het
Dmp1	T	C	5: 104,354,991 (GRCm39)	L10P	probably damaging	Het
Gcc2	T	C	10: 58,107,287 (GRCm39)	V741A	probably benign	Het
Gldn	A	G	9: 54,194,162 (GRCm39)	M119V	probably benign	Het
Gucy1b1	A	G	3: 81,941,718 (GRCm39)	S574P	possibly damaging	Het
Hapln4	T	A	8: 70,537,073 (GRCm39)		probably benign	Het
Hars1	A	G	18: 36,904,385 (GRCm39)	V209A	probably benign	Het
Htt	T	A	5: 35,053,231 (GRCm39)	F2521L	possibly damaging	Het
Kif14	A	G	1: 136,443,724 (GRCm39)	D1299G	probably null	Het
Krt25	T	A	11: 99,208,253 (GRCm39)	E325V	probably damaging	Het
Lcmt1	T	C	7: 122,977,405 (GRCm39)		probably benign	Het
Lrp1b	A	T	2: 40,693,221 (GRCm39)	N3266K	probably damaging	Het
Mctp1	T	A	13: 77,168,982 (GRCm39)		probably null	Het
Mtarc2	A	G	1: 184,551,525 (GRCm39)	S304P	probably damaging	Het
Myo5b	G	A	18: 74,750,064 (GRCm39)	A176T	probably damaging	Het
Myom3	A	G	4: 135,503,688 (GRCm39)	N379S	possibly damaging	Het
Nbea	A	T	3: 55,908,037 (GRCm39)	D1358E	possibly damaging	Het
Nod1	T	C	6: 54,901,968 (GRCm39)	E939G	probably damaging	Het
Obox1	A	G	7: 15,289,294 (GRCm39)	R70G	probably benign	Het
Or13c25	A	G	4: 52,911,399 (GRCm39)	Y132H	probably damaging	Het
Or13p3	A	G	4: 118,567,144 (GRCm39)	E180G	probably benign	Het
Or4a2	C	T	2: 89,248,695 (GRCm39)	G21S	probably benign	Het
Or5m12	T	C	2: 85,734,560 (GRCm39)	I279M	probably benign	Het
Otof	T	C	5: 30,529,279 (GRCm39)	D1745G	possibly damaging	Het
Pklr	A	G	3: 89,044,662 (GRCm39)	I47V	probably damaging	Het
Pms2	T	A	5: 143,851,451 (GRCm39)	S123T	possibly damaging	Het
Pnpla2	T	C	7: 141,039,198 (GRCm39)	S337P	probably damaging	Het
Ptgfrn	A	C	3: 100,952,936 (GRCm39)	V766G	possibly damaging	Het
Ptpn11	T	A	5: 121,282,716 (GRCm39)	H419L	probably damaging	Het
Rims3	T	A	4: 120,740,350 (GRCm39)	V99E	probably damaging	Het
Rmc1	G	A	18: 12,313,571 (GRCm39)	R228H	probably damaging	Het
Samd9l	A	G	6: 3,376,361 (GRCm39)	V300A	probably damaging	Het
Siglecg	T	C	7: 43,058,178 (GRCm39)	Y22H	possibly damaging	Het
Slc39a1	A	G	3: 90,159,588 (GRCm39)	K305R	possibly damaging	Het
Slc5a4a	A	G	10: 76,014,034 (GRCm39)	R414G	probably damaging	Het
Smg1	T	C	7: 117,753,500 (GRCm39)		probably benign	Het
Tbc1d9b	C	T	11: 50,022,324 (GRCm39)	A20V	possibly damaging	Het
Tgfb3	G	T	12: 86,110,638 (GRCm39)	D237E	probably benign	Het
Tle6	A	G	10: 81,431,073 (GRCm39)	S234P	probably benign	Het
Tnrc6b	A	G	15: 80,763,815 (GRCm39)	N439S	probably benign	Het
Trim33	T	C	3: 103,248,925 (GRCm39)	S783P	probably benign	Het
Ttn	A	T	2: 76,632,698 (GRCm39)	Y12373N	probably damaging	Het
Tube1	G	A	10: 39,010,097 (GRCm39)	V7I	probably benign	Het
Tufm	T	C	7: 126,088,410 (GRCm39)	V265A	probably benign	Het
Usp32	T	C	11: 84,877,402 (GRCm39)	H1550R	possibly damaging	Het
Usp33	A	T	3: 152,081,887 (GRCm39)	M546L	probably damaging	Het
Uspl1	C	A	5: 149,151,097 (GRCm39)	Q752K	probably benign	Het
Vmn1r20	A	G	6: 57,408,655 (GRCm39)		probably null	Het
Vmn1r201	T	C	13: 22,659,521 (GRCm39)	F245S	probably damaging	Het
Vmn2r3	A	G	3: 64,186,182 (GRCm39)	S168P	probably damaging	Het
Wdr24	T	G	17: 26,044,650 (GRCm39)	D168E	possibly damaging	Het
Zfp646	C	T	7: 127,482,853 (GRCm39)	P1677S	probably damaging	Het

Other mutations in Sdad1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00786:Sdad1	APN	5	92,451,632 (GRCm39)	splice site	probably null
IGL01355:Sdad1	APN	5	92,450,538 (GRCm39)	missense	probably damaging	1.00
IGL01635:Sdad1	APN	5	92,445,019 (GRCm39)	missense	probably damaging	0.98
IGL02166:Sdad1	APN	5	92,439,621 (GRCm39)	missense	probably benign	0.03
IGL02503:Sdad1	APN	5	92,449,661 (GRCm39)	unclassified	probably benign
IGL02739:Sdad1	APN	5	92,437,931 (GRCm39)	missense	probably benign	0.43
PIT4468001:Sdad1	UTSW	5	92,439,777 (GRCm39)	missense	probably damaging	1.00
R0583:Sdad1	UTSW	5	92,452,923 (GRCm39)	missense	probably damaging	0.97
R1169:Sdad1	UTSW	5	92,446,092 (GRCm39)	missense	probably benign	0.32
R1496:Sdad1	UTSW	5	92,457,682 (GRCm39)	missense	possibly damaging	0.94
R1844:Sdad1	UTSW	5	92,453,155 (GRCm39)	nonsense	probably null
R1848:Sdad1	UTSW	5	92,440,510 (GRCm39)	critical splice donor site	probably null
R2419:Sdad1	UTSW	5	92,453,677 (GRCm39)	missense	possibly damaging	0.69
R2497:Sdad1	UTSW	5	92,447,958 (GRCm39)	missense	probably benign	0.00
R2509:Sdad1	UTSW	5	92,453,684 (GRCm39)	missense	probably benign	0.12
R4043:Sdad1	UTSW	5	92,450,553 (GRCm39)	missense	probably damaging	0.96
R4384:Sdad1	UTSW	5	92,446,116 (GRCm39)	missense	probably benign	0.01
R4477:Sdad1	UTSW	5	92,445,019 (GRCm39)	missense	probably damaging	0.98
R4478:Sdad1	UTSW	5	92,445,019 (GRCm39)	missense	probably damaging	0.98
R4734:Sdad1	UTSW	5	92,452,836 (GRCm39)	missense	possibly damaging	0.61
R4749:Sdad1	UTSW	5	92,452,836 (GRCm39)	missense	possibly damaging	0.61
R5135:Sdad1	UTSW	5	92,451,793 (GRCm39)	missense	probably benign	0.00
R5288:Sdad1	UTSW	5	92,434,684 (GRCm39)	makesense	probably null
R7038:Sdad1	UTSW	5	92,446,049 (GRCm39)	critical splice donor site	probably null
R7099:Sdad1	UTSW	5	92,441,832 (GRCm39)	missense	possibly damaging	0.89
R7420:Sdad1	UTSW	5	92,453,596 (GRCm39)	missense	possibly damaging	0.91
R7425:Sdad1	UTSW	5	92,447,980 (GRCm39)	missense	probably benign	0.10
R7714:Sdad1	UTSW	5	92,450,538 (GRCm39)	missense	probably damaging	1.00
R8048:Sdad1	UTSW	5	92,447,948 (GRCm39)	missense	probably benign	0.01
R8198:Sdad1	UTSW	5	92,439,811 (GRCm39)	missense	probably damaging	0.96
R8347:Sdad1	UTSW	5	92,446,088 (GRCm39)	missense	probably benign	0.00
R8693:Sdad1	UTSW	5	92,452,857 (GRCm39)	missense	probably benign	0.09
R8696:Sdad1	UTSW	5	92,437,645 (GRCm39)	missense	probably damaging	1.00
R8746:Sdad1	UTSW	5	92,437,784 (GRCm39)	missense	probably benign
R9004:Sdad1	UTSW	5	92,439,820 (GRCm39)	missense	probably benign	0.00
R9166:Sdad1	UTSW	5	92,446,080 (GRCm39)	nonsense	probably null
R9732:Sdad1	UTSW	5	92,438,942 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- GGTTGCATTGCTGTCTCTCAAC -3'
(R):5'- AGAGAGCAGCAGTCTTACCG -3'

Sequencing Primer
(F):5'- GTGTACATGAAGTTCTGCAGCACC -3'
(R):5'- AGAGCAGCAGTCTTACCGTTTCAG -3'

Posted On

2018-04-02