Mutagenetix > Incidental Mutation

Incidental Mutation 'FR4737:Lrit3'

511610

Institutional Source

Beutler Lab

Gene Symbol

Lrit3

Ensembl Gene

ENSMUSG00000093865

Gene Name

leucine-rich repeat, immunoglobulin-like and transmembrane domains 3

Synonyms

LOC242235

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

FR4737 ()

Quality Score

214.458

Status

Not validated

Chromosome

Chromosomal Location

129581530-129597679 bp(-) (GRCm39)

Type of Mutation

frame shift

DNA Base Change (assembly)

AC to ACATTC at 129597562 bp (GRCm39)

Zygosity

Homozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000140184 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000029648] [ENSMUST00000171313] [ENSMUST00000179187] [ENSMUST00000185462] [ENSMUST00000196902] [ENSMUST00000200079]

AlphaFold

W8DXL4

Predicted Effect

probably benign
Transcript: ENSMUST00000029648

SMART Domains

Protein: ENSMUSP00000029648
Gene: ENSMUSG00000028012

Domain	Start	End	E-Value	Type
low complexity region	6	22	N/A	INTRINSIC
Pfam:7TM_GPCR_Srsx	36	309	3.5e-11	PFAM
Pfam:7tm_1	42	294	1.5e-48	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000171313

SMART Domains

Protein: ENSMUSP00000132360
Gene: ENSMUSG00000028012

Domain	Start	End	E-Value	Type
low complexity region	6	22	N/A	INTRINSIC
Pfam:7TM_GPCR_Srsx	36	309	3.5e-11	PFAM
Pfam:7tm_1	42	294	4.6e-45	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000179187

SMART Domains

Protein: ENSMUSP00000136912
Gene: ENSMUSG00000093865

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
LRRNT	20	61	2.7e-1	SMART
LRR	80	103	6.96e0	SMART
LRR	104	127	3.27e1	SMART
LRR_TYP	128	151	4.47e-3	SMART
LRR_TYP	152	175	7.37e-4	SMART
LRRCT	201	252	4.65e-2	SMART
Blast:IG	260	297	9e-13	BLAST
low complexity region	298	311	N/A	INTRINSIC
FN3	364	443	1.85e0	SMART
transmembrane domain	462	484	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000185462

SMART Domains

Protein: ENSMUSP00000140184
Gene: ENSMUSG00000093865

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
LRRNT	20	61	1.3e-3	SMART
LRR	80	103	2.9e-2	SMART
LRR	104	127	1.4e-1	SMART
LRR_TYP	128	151	1.9e-5	SMART
LRR_TYP	152	175	3.2e-6	SMART
LRRCT	201	252	2.3e-4	SMART
IGc2	266	335	4.7e-11	SMART
low complexity region	340	352	N/A	INTRINSIC
low complexity region	362	376	N/A	INTRINSIC
low complexity region	408	432	N/A	INTRINSIC
FN3	485	564	9e-3	SMART
transmembrane domain	583	605	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000188978

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000196317

Predicted Effect

probably benign
Transcript: ENSMUST00000196902

SMART Domains

Protein: ENSMUSP00000143093
Gene: ENSMUSG00000028012

Domain	Start	End	E-Value	Type
low complexity region	6	22	N/A	INTRINSIC
Pfam:7TM_GPCR_Srsx	36	309	3.5e-11	PFAM
Pfam:7tm_1	42	294	1.5e-48	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000197535

Predicted Effect

probably benign
Transcript: ENSMUST00000200079

SMART Domains

Protein: ENSMUSP00000143054
Gene: ENSMUSG00000028012

Domain	Start	End	E-Value	Type
low complexity region	6	22	N/A	INTRINSIC
Pfam:7tm_1	30	197	3.1e-22	PFAM

Coding Region Coverage

1x: 99.8%
3x: 99.6%
10x: 98.8%
20x: 97.0%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein that has a fibronectin type III domain and a C-terminal transmembrane domain, as well as a leucine-rich repeat domain and immunoglobulin-like domain near the N-terminus. The encoded protein may regulate fibroblast growth factor receptors and affect the modification of these receptors, which are glycosylated differently in the Golgi and endoplasmic reticulum. Mutations in this gene are associated with congenital stationary night blindness, type 1F. [provided by RefSeq, May 2013]
PHENOTYPE: Mice homozygous for a targeted allele show a selective absence of the ERG b-wave with a normal a-wave component under scotopic conditions, as well as variable ERG responses with larger a-wave amplitudes, shorter b-wave amplitudes, and longer implicit times of both waves under photopic conditions. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 209 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700001K19Rik	TCT	TCTCCT	12: 110,634,882 (GRCm39)		probably benign	Het
A630001G21Rik	CTGTT	CT	1: 85,650,856 (GRCm39)		probably benign	Homo
Abcb11	C	A	2: 69,073,862 (GRCm39)	R1221L	probably damaging	Homo
Abcb4	GAAA	G	5: 8,946,597 (GRCm39)		probably benign	Homo
Ahdc1	CT	CTCGT	4: 132,790,070 (GRCm39)		probably benign	Homo
Alpk3	TCT	TCTACT	7: 80,727,510 (GRCm39)		probably benign	Het
Amfr	C	G	8: 94,731,787 (GRCm39)	G30R	probably damaging	Homo
Ankrd35	GC	GCTAC	3: 96,591,165 (GRCm39)		probably benign	Homo
Anxa7	C	T	14: 20,519,479 (GRCm39)	G113E	probably damaging	Homo
Apc	CAATAAAGC	CAATAAAGCTAATAAAGC	18: 34,415,052 (GRCm39)		probably benign	Homo
Apol6	GTTT	GTTTCTTT	15: 76,935,642 (GRCm39)		probably null	Homo
Arpc1b	GGTGGC	GGTGGCGTGGC	5: 145,063,597 (GRCm39)		probably null	Het
AY358078	C	T	14: 52,043,155 (GRCm39)	S281L	unknown	Homo
Blm	ACCTGC	ACCTGCCTGC	7: 80,113,519 (GRCm39)		probably null	Het
Blm	T	TACCA	7: 80,113,522 (GRCm39)		probably null	Het
Bltp1	TTATTAT	TTATTATTATTATTACTATTAT	3: 37,104,903 (GRCm39)		probably benign	Het
Blzf1	TTGT	TT	1: 164,131,486 (GRCm39)		probably null	Homo
Btnl10	A	AAGG	11: 58,814,757 (GRCm39)		probably benign	Homo
Cacna1a	ACC	ACCGCC	8: 85,365,349 (GRCm39)		probably benign	Het
Cacna1a	ACC	ACCCCC	8: 85,365,355 (GRCm39)		probably benign	Homo
Catsper2	TTC	TTCTTTTACTTTGTC	2: 121,228,021 (GRCm39)		probably benign	Homo
Ccdc170	ACC	ACCTCC	10: 4,511,023 (GRCm39)		probably benign	Het
Ccdc170	AC	ACCCC	10: 4,511,029 (GRCm39)		probably benign	Het
Ccdc73	TAAG	T	2: 104,822,185 (GRCm39)		probably benign	Homo
Ccnk	TTCCCAC	T	12: 108,168,766 (GRCm39)		probably benign	Het
Cdan1	A	C	2: 120,555,452 (GRCm39)	V763G	probably damaging	Het
Cdk6	A	G	5: 3,394,211 (GRCm39)		probably benign	Het
Cdx1	TGCTGC	TGCTGCCGCTGC	18: 61,152,946 (GRCm39)		probably benign	Het
Cdx1	GCTGCT	GCTGCTTCTGCT	18: 61,152,950 (GRCm39)		probably benign	Het
Cfap46	CCTTCT	CCTTCTTCT	7: 139,218,846 (GRCm39)		probably benign	Homo
Chd4	GC	GCTCCCCC	6: 125,099,094 (GRCm39)		probably benign	Homo
Cluh	GAGCCT	GAGCCTAAGCCT	11: 74,560,350 (GRCm39)		probably benign	Het
Cluh	CC	CCTGAGGC	11: 74,560,359 (GRCm39)		probably benign	Het
Cluh	CCCCGAGCC	CCCCGAGCCCGAGCC	11: 74,560,340 (GRCm39)		probably benign	Het
Cluh	AGCCTG	AGCCTGCGCCTG	11: 74,560,345 (GRCm39)		probably benign	Het
Cntnap1	GCCCCA	GCCCCACCCCCA	11: 101,080,408 (GRCm39)		probably benign	Het
Cntnap1	CCCAGC	CCCAGCGCCAGC	11: 101,080,416 (GRCm39)		probably benign	Het
Cntnap1	AGCCCC	AGCCCCCGCCCC	11: 101,080,395 (GRCm39)		probably benign	Het
Cntnap1	GCCCCA	GCCCCAACCCCA	11: 101,080,402 (GRCm39)		probably benign	Het
Cracdl	T	A	1: 37,664,116 (GRCm39)	E594V	probably benign	Homo
Cracdl	C	A	1: 37,664,117 (GRCm39)	E594*	probably null	Homo
Cul9	CTC	CTCTTC	17: 46,811,784 (GRCm39)		probably benign	Het
Cul9	CTCTTC	CTCTTCTTC	17: 46,811,772 (GRCm39)		probably benign	Het
Cyth2	C	A	7: 45,462,466 (GRCm39)	S102I	possibly damaging	Het
Dbr1	AGGAGG	AGGAGGCGGAGG	9: 99,465,739 (GRCm39)		probably benign	Het
Dbr1	GGAGG	GGAGGACGAGG	9: 99,465,752 (GRCm39)		probably benign	Het
Dennd2b	CACCACACTGGGGCAGCCCACACTGGGGCAG	CCCCACACTGGGGCAG	7: 109,156,128 (GRCm39)		probably benign	Het
Dhx8	GACCGA	GACCGATACCGA	11: 101,629,005 (GRCm39)		probably benign	Homo
Dhx8	GAGACC	GAGACCCAGACC	11: 101,629,015 (GRCm39)		probably benign	Homo
Dhx8	CGAGAC	CGAGACGGAGAC	11: 101,629,008 (GRCm39)		probably benign	Homo
Dnaaf9	CC	CCTGC	2: 130,612,672 (GRCm39)		probably benign	Het
Dnah8	ACTGCCCCT	ACT	17: 30,854,439 (GRCm39)		probably benign	Het
Dnah8	CCTCCCG	C	17: 30,854,451 (GRCm39)		probably benign	Homo
Dnajb5	AGGTG	A	4: 42,957,126 (GRCm39)		probably null	Het
Dusp10	G	T	1: 183,769,253 (GRCm39)	C73F	probably damaging	Homo
E4f1	CCG	CCGACG	17: 24,674,166 (GRCm39)		probably benign	Homo
Eif3a	TTA	TTATTATA	19: 60,763,727 (GRCm39)		probably benign	Het
Fam81b	TTC	TTCGTC	13: 76,419,438 (GRCm39)		probably benign	Het
Fbxo22	G	A	9: 55,116,666 (GRCm39)	R56H	probably damaging	Het
Fcgr1	CTTCT	C	3: 96,191,820 (GRCm39)		probably null	Het
Fcgr1	T	C	3: 96,194,410 (GRCm39)	D159G	probably benign	Homo
Fmn1	CC	CCTCCTTC	2: 113,356,129 (GRCm39)		probably benign	Het
Fmn1	CCTCCT	CCTCCTACTCCT	2: 113,356,123 (GRCm39)		probably benign	Het
Fmn1	CC	CCCCCTGC	2: 113,356,126 (GRCm39)		probably benign	Het
G530012D18Rik	GA	GACAGAGATA	1: 85,504,899 (GRCm39)		probably null	Het
Gli3	G	A	13: 15,818,942 (GRCm39)	R248H	probably damaging	Het
Gm16503	G	A	4: 147,625,710 (GRCm39)	G68E	unknown	Het
Gm19345	GGATGGCAGGTG	GG	7: 19,591,527 (GRCm39)		probably null	Het
Gm4340	AGC	AGCTGC	10: 104,031,958 (GRCm39)		probably benign	Het
Gm4340	AG	AGCGG	10: 104,031,961 (GRCm39)		probably benign	Het
Gm4340	GCA	GCAACA	10: 104,031,938 (GRCm39)		probably benign	Het
Gm6309	C	T	5: 146,104,993 (GRCm39)	V307I	probably benign	Het
Gpatch11	AAGAGG	AAGAGGCAGAGG	17: 79,149,600 (GRCm39)		probably benign	Het
Gpatch11	AGGAA	AGGAAGCGGAA	17: 79,149,609 (GRCm39)		probably benign	Het
Hoxa10	T	A	6: 52,211,166 (GRCm39)	Q250L	possibly damaging	Homo
Hrh1	T	C	6: 114,458,084 (GRCm39)	I455T	possibly damaging	Het
Hspa1b	GCGCC	GC	17: 35,176,105 (GRCm39)		probably benign	Homo
Iba57	GAAA	GAAAAA	11: 59,052,331 (GRCm39)		probably null	Homo
Igf1r	TGGAGC	TGGAGCTGGAGAGGGAGC	7: 67,875,929 (GRCm39)		probably benign	Het
Il17rd	CGG	CGGAGG	14: 26,804,637 (GRCm39)		probably benign	Het
Il2	TGG	TGGGGCTTGAAGCGG	3: 37,179,977 (GRCm39)		probably benign	Het
Il2	AGGTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG	AGCTGCTGCTGCTGCTGCTGCTGCTG	3: 37,179,913 (GRCm39)		probably benign	Het
Kcng4	G	T	8: 120,360,258 (GRCm39)	Y39*	probably null	Homo
Klra2	G	GAAATCCACAT	6: 131,198,815 (GRCm39)		probably null	Het
Kmt2b	CCTCCT	CCTCCTTCTCCT	7: 30,285,792 (GRCm39)		probably benign	Het
Kmt2b	CCTCCT	CCTCCTGCTCCT	7: 30,285,795 (GRCm39)		probably benign	Het
Kmt2b	TCCTCC	TCCTCCCCCTCC	7: 30,285,803 (GRCm39)		probably benign	Het
Kmt2b	TCCTCC	TCCTCCCCCTCC	7: 30,285,791 (GRCm39)		probably benign	Het
Krt10	TCCTCC	TCCTCCGCCTCC	11: 99,280,099 (GRCm39)		probably benign	Het
Krt10	TCCGCC	TCCGCCGCC	11: 99,277,023 (GRCm39)		probably benign	Homo
Krt10	TCC	TCCTCCACC	11: 99,280,105 (GRCm39)		probably benign	Homo
Krtap28-10	TCCCACA	TCCCACACCCACA	1: 83,019,844 (GRCm39)		probably benign	Homo
Krtap4-2	A	ACAC	11: 99,525,839 (GRCm39)		probably benign	Het
Krtap9-3	AC	ACAGGTGTCGC	11: 99,488,830 (GRCm39)		probably benign	Het
Las1l	AGG	AGGGGG	X: 94,984,427 (GRCm39)		probably benign	Het
Las1l	GAG	GAGCAG	X: 94,984,435 (GRCm39)		probably benign	Het
Las1l	AGG	AGGCGG	X: 94,984,433 (GRCm39)		probably benign	Het
Luzp1	A	AGGTGGCCTCTTCAGT	4: 136,270,507 (GRCm39)		probably benign	Het
Mamld1	AGC	AGCCGC	X: 70,162,441 (GRCm39)		probably benign	Het
Mamld1	GCA	GCAACA	X: 70,162,445 (GRCm39)		probably benign	Het
Mapk8ip3	G	A	17: 25,121,093 (GRCm39)		probably null	Homo
Mbd1	TGTCTGCATCTGCGTCTTCGTCTGCATCTGCATCTGCGTCTTCGTCTGCATCTGCATCTGC	TATCTGCATCTGCGTCTTCGTCTGCATCTGCATCTGC	18: 74,406,644 (GRCm39)		probably benign	Het
Nat8f2	T	A	6: 85,844,668 (GRCm39)	L231F	possibly damaging	Homo
Nfxl1	CC	CCGGGGAC	5: 72,716,464 (GRCm39)		probably benign	Het
Noc2l	GCT	GCTTCT	4: 156,324,551 (GRCm39)		probably benign	Het
Noc2l	GGTAG	GG	4: 156,325,958 (GRCm39)		probably benign	Homo
Noc2l	CTG	CTGTTG	4: 156,324,552 (GRCm39)		probably benign	Het
Nxpe5	C	T	5: 138,228,196 (GRCm39)		probably benign	Het
Or10j2	GGGCTGCTTGTGGCAAT	G	1: 173,098,197 (GRCm39)		probably null	Het
Or51a43	G	C	7: 103,720,499 (GRCm39)		probably benign	Homo
Or51f2	CT	CTAATTGCCTT	7: 102,526,440 (GRCm39)		probably benign	Homo
Or8b41	A	G	9: 38,054,484 (GRCm39)	I13V	probably benign	Homo
Or8u3-ps	CAG	CAGAG	2: 85,953,104 (GRCm39)		probably null	Homo
Osmr	C	CTCA	15: 6,867,187 (GRCm39)		probably null	Homo
Patl2	GC	GCTAC	2: 121,956,625 (GRCm39)		probably null	Het
Patl2	C	CTGA	2: 121,956,626 (GRCm39)		probably benign	Het
Patl2	CTG	CTGTTG	2: 121,956,617 (GRCm39)		probably benign	Het
Pdik1l	GTTTTTGTTTT	GTTTTTGTTTTTTTTTTGTTTT	4: 134,006,678 (GRCm39)		probably null	Homo
Pdik1l	ACCACC	ACCACCCCCACC	4: 134,006,817 (GRCm39)		probably benign	Het
Phc1	GCTG	GCTGCTTCTG	6: 122,300,557 (GRCm39)		probably benign	Het
Piezo1	G	A	8: 123,222,308 (GRCm39)	R503W	probably damaging	Homo
Pitrm1	TTTTA	T	13: 6,610,632 (GRCm39)		probably benign	Homo
Pkdrej	TG	TGGGAGCG	15: 85,703,881 (GRCm39)		probably benign	Homo
Pla2g4e	AGGG	A	2: 120,075,205 (GRCm39)		probably benign	Homo
Plekhs1	AC	ACCTCCCCCGAGCC	19: 56,468,295 (GRCm39)		probably benign	Het
Pnma8a	CCTCATGATGCACCTGCTTCAACATC	CCTCATGATGCACCTGCTTCAACATCTCATGATGCACCTGCTTCAACATC	7: 16,695,350 (GRCm39)		probably benign	Homo
Pnma8b	TGGA	T	7: 16,679,931 (GRCm39)		probably benign	Het
Ppp1r3f	C	A	X: 7,426,575 (GRCm39)	G562V	probably damaging	Homo
Prr13	CTC	CTCATC	15: 102,370,608 (GRCm39)		probably benign	Het
Prss41	CACA	C	17: 24,063,071 (GRCm39)		probably benign	Het
Prtg	GTAAC	G	9: 72,764,363 (GRCm39)		probably benign	Het
Ptk2b	C	T	14: 66,411,298 (GRCm39)	R411Q	possibly damaging	Homo
Ptms	TCT	TCTGCT	6: 124,891,420 (GRCm39)		probably benign	Homo
Ptms	C	CTTG	6: 124,891,424 (GRCm39)		probably benign	Homo
Ptms	TTC	TTCGTC	6: 124,891,422 (GRCm39)		probably benign	Homo
Ptpn23	G	T	9: 110,216,701 (GRCm39)	P1052T	probably benign	Homo
Rab3il1	C	A	19: 10,011,115 (GRCm39)	A264E	probably damaging	Homo
Rbm6	GCTGT	G	9: 107,659,954 (GRCm39)		probably null	Homo
Rtbdn	TAG	TAGGGGCAG	8: 85,682,790 (GRCm39)		probably benign	Het
Rtbdn	GGC	GGCAGCTGC	8: 85,682,806 (GRCm39)		probably benign	Het
Rtbdn	CGGC	CGGCAGGGGC	8: 85,682,805 (GRCm39)		probably benign	Het
Rtbdn	AGCG	AGCGTCCGCG	8: 85,682,797 (GRCm39)		probably benign	Het
Sbp	CAAAG	CAAAGCTGCTGACAAAAAAG	17: 24,164,356 (GRCm39)		probably benign	Het
Sbp	G	GCTGACAACAAAGATC	17: 24,164,363 (GRCm39)		probably benign	Het
Setd1a	GTGGTAGTG	GTGGTAGTGTTGGTAGTG	7: 127,384,484 (GRCm39)		probably benign	Het
Sfswap	GCCCACTC	GCCCACTCATCCCACTC	5: 129,646,820 (GRCm39)		probably benign	Het
Six3	GGC	GGCAGC	17: 85,928,785 (GRCm39)		probably benign	Het
Six3	GCG	GCGCCG	17: 85,928,786 (GRCm39)		probably benign	Het
Six3	CGG	CGGGGG	17: 85,928,790 (GRCm39)		probably benign	Het
Six3	GGC	GGCAGC	17: 85,928,791 (GRCm39)		probably benign	Het
Six3	CGG	CGGGGG	17: 85,928,793 (GRCm39)		probably benign	Het
Six3	CGG	CGGGGG	17: 85,928,796 (GRCm39)		probably benign	Het
Slc12a1	ACC	ACCTTTGGCCACAACTCC	2: 124,996,134 (GRCm39)		probably benign	Homo
Smarca2	CAGCAGCAGCAGCAGCAGCA	CAGCAGCAGCAGCAGCAGCAGCAGCA	19: 26,608,399 (GRCm39)		probably benign	Homo
Spaca1	TCGCTC	TCGCTCGCGCTC	4: 34,049,836 (GRCm39)		probably benign	Het
Spag1	TTC	TTCGTC	15: 36,197,879 (GRCm39)		probably benign	Het
Spag17	AGG	AGGCGG	3: 99,963,573 (GRCm39)		probably benign	Het
Spata31h1	TTCA	T	10: 82,121,303 (GRCm39)		probably benign	Homo
Srebf2	G	T	15: 82,069,536 (GRCm39)	A693S	probably damaging	Homo
Srpk2	T	C	5: 23,750,194 (GRCm39)		probably null	Homo
Sry	AACTGCT	A	Y: 2,663,195 (GRCm39)		probably benign	Het
Sry	GTG	GTGTTG	Y: 2,662,837 (GRCm39)		probably benign	Homo
Sry	TGG	TGGGGG	Y: 2,662,838 (GRCm39)		probably benign	Homo
Stard9	C	CTAAGGGACTAGTAGG	2: 120,526,566 (GRCm39)		probably benign	Het
Supt20	CAGCAG	CAGCAGGAGCAG	3: 54,635,079 (GRCm39)		probably benign	Het
Supt20	CAGCAG	CAGCAGAAGCAG	3: 54,635,082 (GRCm39)		probably benign	Het
Supt20	GCAGCA	GCAGCAACAGCA	3: 54,635,078 (GRCm39)		probably benign	Het
Tcof1	GGGTA	G	18: 60,961,722 (GRCm39)		probably benign	Homo
Tdpoz3	A	C	3: 93,733,981 (GRCm39)	N219H	probably benign	Het
Tesk1	C	CCCCG	4: 43,447,004 (GRCm39)		probably null	Homo
Tob1	GCA	GCAACA	11: 94,105,290 (GRCm39)		probably benign	Het
Tob1	CACA	CACAACA	11: 94,105,277 (GRCm39)		probably benign	Het
Tob1	A	AGCC	11: 94,105,304 (GRCm39)		probably benign	Het
Trav15-2-dv6-2	AG	AGAGG	14: 53,887,213 (GRCm39)		probably benign	Homo
Trav15-2-dv6-2	G	GAAA	14: 53,887,214 (GRCm39)		probably benign	Homo
Trim63	GAGT	G	4: 134,055,036 (GRCm39)		probably benign	Het
Tsbp1	CAG	CAGAAG	17: 34,679,025 (GRCm39)		probably benign	Het
Tsbp1	GCA	GCATCA	17: 34,679,042 (GRCm39)		probably benign	Het
Tsen2	G	GAGA	6: 115,537,038 (GRCm39)		probably benign	Het
Ttf2	TC	TCCCC	3: 100,870,476 (GRCm39)		probably benign	Homo
Tusc1	ACCGCC	ACCGCCCCCGCC	4: 93,223,550 (GRCm39)		probably benign	Homo
Ubqlnl	TGAG	T	7: 103,799,042 (GRCm39)		probably benign	Homo
Ubtf	CCT	CCTACT	11: 102,197,774 (GRCm39)		probably null	Het
Ubtf	TCC	TCCACC	11: 102,197,776 (GRCm39)		probably benign	Het
Vps13b	G	T	15: 35,847,103 (GRCm39)	A2629S	probably damaging	Homo
Wasf3	G	T	5: 146,407,060 (GRCm39)	R460L	probably damaging	Het
Zc3h13	TGCGAGATG	TGCGAGATGAGCGAGATG	14: 75,561,039 (GRCm39)		probably benign	Homo
Zc3h13	ATGTGCGAG	ATGTGCGAGGTGTGCGAG	14: 75,561,036 (GRCm39)		probably benign	Homo
Zfhx3	GCAACA	GCAACAACAACAACA	8: 109,682,720 (GRCm39)		probably benign	Het
Zfhx3	GCA	GCAACAGCACCA	8: 109,682,735 (GRCm39)		probably benign	Het
Zfhx3	AGCA	AGCAACAGACGCA	8: 109,682,734 (GRCm39)		probably benign	Het
Zfp111	TCA	TCAACA	7: 23,899,230 (GRCm39)		probably benign	Homo
Zfp112	CATGA	CATGATGA	7: 23,824,832 (GRCm39)		probably benign	Homo
Zfp26	C	A	9: 20,349,842 (GRCm39)	A241S	probably benign	Homo
Zfp282	CGG	CGGGGG	6: 47,881,724 (GRCm39)		probably benign	Het
Zfp282	CGG	CGGGGG	6: 47,881,733 (GRCm39)		probably benign	Het
Zfp335	TC	TCCCC	2: 164,749,404 (GRCm39)		probably benign	Het
Zfp335	TCC	TCCGCC	2: 164,749,395 (GRCm39)		probably benign	Het
Zfp335	CTC	CTCGTC	2: 164,749,394 (GRCm39)		probably benign	Het
Zfp462	CCACC	CCACCTCAGCCACAGTCACC	4: 55,009,758 (GRCm39)		probably benign	Het
Zfp462	ACC	ACCTCAGCCACAGTCGCC	4: 55,009,760 (GRCm39)		probably benign	Het
Zfp598	ACCACC	ACCACCCCCACC	17: 24,899,750 (GRCm39)		probably benign	Het
Zfp598	AC	ACCACCGC	17: 24,899,765 (GRCm39)		probably benign	Het
Zfp598	ACCACC	ACCACCGCCACC	17: 24,899,756 (GRCm39)		probably benign	Het
Zfp831	TCC	TCCCCC	2: 174,487,264 (GRCm39)		probably benign	Het
Zfp831	TC	TCCGC	2: 174,487,276 (GRCm39)		probably benign	Het
Zfp831	CTC	CTCATC	2: 174,487,269 (GRCm39)		probably benign	Het
Zfp93	CAGGCATAG	CAG	7: 23,974,814 (GRCm39)		probably benign	Homo
Zscan10	TGACG	TG	17: 23,828,419 (GRCm39)		probably benign	Homo

Other mutations in Lrit3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
FR4304:Lrit3	UTSW	3	129,582,468 (GRCm39)	small insertion	probably benign
FR4340:Lrit3	UTSW	3	129,582,457 (GRCm39)	small insertion	probably benign
FR4548:Lrit3	UTSW	3	129,582,465 (GRCm39)	small insertion	probably benign
FR4548:Lrit3	UTSW	3	129,582,462 (GRCm39)	small insertion	probably benign
FR4589:Lrit3	UTSW	3	129,597,562 (GRCm39)	frame shift	probably null
FR4737:Lrit3	UTSW	3	129,582,459 (GRCm39)	small insertion	probably benign
FR4737:Lrit3	UTSW	3	129,582,455 (GRCm39)	small insertion	probably benign
FR4976:Lrit3	UTSW	3	129,597,559 (GRCm39)	unclassified	probably benign
R0555:Lrit3	UTSW	3	129,584,945 (GRCm39)	missense	probably damaging	1.00
R0629:Lrit3	UTSW	3	129,581,951 (GRCm39)	missense	probably damaging	1.00
R0631:Lrit3	UTSW	3	129,582,204 (GRCm39)	missense	probably damaging	1.00
R1690:Lrit3	UTSW	3	129,594,394 (GRCm39)	missense	probably damaging	0.99
R1902:Lrit3	UTSW	3	129,584,895 (GRCm39)	missense	probably benign	0.17
R1955:Lrit3	UTSW	3	129,594,130 (GRCm39)	missense	probably benign	0.11
R3155:Lrit3	UTSW	3	129,585,044 (GRCm39)	missense	probably benign	0.00
R4005:Lrit3	UTSW	3	129,585,021 (GRCm39)	missense	probably benign	0.14
R4445:Lrit3	UTSW	3	129,582,180 (GRCm39)	nonsense	probably null
R4675:Lrit3	UTSW	3	129,582,121 (GRCm39)	missense	probably damaging	1.00
R5104:Lrit3	UTSW	3	129,582,040 (GRCm39)	missense	possibly damaging	0.86
R5147:Lrit3	UTSW	3	129,597,574 (GRCm39)	missense	possibly damaging	0.78
R5271:Lrit3	UTSW	3	129,581,950 (GRCm39)	missense	probably damaging	1.00
R5505:Lrit3	UTSW	3	129,585,087 (GRCm39)	missense	possibly damaging	0.83
R5587:Lrit3	UTSW	3	129,582,547 (GRCm39)	missense	probably benign	0.25
R6056:Lrit3	UTSW	3	129,583,004 (GRCm39)	missense	probably damaging	1.00
R6239:Lrit3	UTSW	3	129,593,995 (GRCm39)	missense	probably damaging	0.98
R6280:Lrit3	UTSW	3	129,582,412 (GRCm39)	missense	probably damaging	0.99
R6305:Lrit3	UTSW	3	129,594,109 (GRCm39)	missense	probably damaging	0.98
R6441:Lrit3	UTSW	3	129,594,009 (GRCm39)	missense	probably benign
R6947:Lrit3	UTSW	3	129,582,883 (GRCm39)	missense	probably benign	0.01
R6949:Lrit3	UTSW	3	129,582,934 (GRCm39)	missense	probably damaging	1.00
R7850:Lrit3	UTSW	3	129,594,452 (GRCm39)	missense	probably damaging	1.00
R8157:Lrit3	UTSW	3	129,594,284 (GRCm39)	missense	probably benign	0.00
R8405:Lrit3	UTSW	3	129,582,301 (GRCm39)	missense	probably benign	0.26
R8896:Lrit3	UTSW	3	129,585,132 (GRCm39)	missense	probably damaging	1.00
R8937:Lrit3	UTSW	3	129,594,193 (GRCm39)	missense	probably damaging	1.00
R9794:Lrit3	UTSW	3	129,594,073 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TTGGAATTTCAGAAACCCGTGTG -3'
(R):5'- GTGGTAGCTTCCCCATGTTC -3'

Sequencing Primer
(F):5'- TCAGAAACCCGTGTGAGGCTTC -3'
(R):5'- GGTAGCTTCCCCATGTTCTTGTTTAG -3'

Posted On

2018-04-05