Incidental Mutation 'IGL01152:Gsx2'
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Gsx2
Ensembl Gene ENSMUSG00000035946
Gene NameGS homeobox 2
SynonymsGsh-2, Gsh2
Accession Numbers
Is this an essential gene? Essential (E-score: 1.000) question?
Stock #IGL01152
Quality Score
Chromosomal Location75075601-75077893 bp(+) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) A to T at 75075791 bp
Amino Acid Change Isoleucine to Phenylalanine at position 11 (I11F)
Ref Sequence ENSEMBL: ENSMUSP00000036625 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000040477] [ENSMUST00000160104]
Predicted Effect probably damaging
Transcript: ENSMUST00000040477
AA Change: I11F

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000036625
Gene: ENSMUSG00000035946
AA Change: I11F

low complexity region 76 101 N/A INTRINSIC
low complexity region 124 172 N/A INTRINSIC
HOX 203 265 9.33e-27 SMART
Predicted Effect probably damaging
Transcript: ENSMUST00000160104
AA Change: I11F

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000123712
Gene: ENSMUSG00000035946
AA Change: I11F

low complexity region 76 101 N/A INTRINSIC
Coding Region Coverage
Validation Efficiency
MGI Phenotype PHENOTYPE: Mice homozygous for a targeted null mutation die within 24 hrs after birth, displaying an early misspecification of precursors in the lateral ganglionic eminence that leads to disruptions in striatal and olfactory bulb development. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 55 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
9530077C05Rik A T 9: 22,435,164 H356L probably benign Het
A730013G03Rik T G 1: 192,833,639 noncoding transcript Het
Abcb4 G A 5: 8,950,678 V1031M probably benign Het
Abcc4 A G 14: 118,599,385 S655P probably damaging Het
Actn1 T C 12: 80,199,046 K121R probably damaging Het
Aldh1l2 T A 10: 83,522,886 R82* probably null Het
Arhgap31 T A 16: 38,602,239 H1155L possibly damaging Het
Atp8a1 G T 5: 67,847,206 P2Q probably damaging Het
Bcs1l A G 1: 74,592,015 M401V possibly damaging Het
Brca2 A T 5: 150,542,390 N1873I probably damaging Het
Cenpj T C 14: 56,552,300 N764S probably benign Het
Cfap206 C T 4: 34,721,562 S162N probably damaging Het
Clk1 A T 1: 58,413,452 C359S possibly damaging Het
Clk2 T A 3: 89,176,511 F479I probably damaging Het
Cul4b T C X: 38,543,370 M709V probably damaging Het
D130052B06Rik G T 11: 33,623,620 probably null Het
Dgkb T A 12: 38,084,234 N46K probably damaging Het
Dnah9 C T 11: 66,072,056 R1811H probably damaging Het
Dnajc18 T C 18: 35,680,873 N281S probably benign Het
Galnt5 A T 2: 58,025,393 I654L probably benign Het
Gm9989 T G 3: 81,922,211 noncoding transcript Het
Gpr179 T C 11: 97,337,411 E1306G probably benign Het
Gsc C A 12: 104,471,605 K219N probably damaging Het
Igdcc4 A C 9: 65,135,164 E121A probably damaging Het
Lama2 C T 10: 27,208,429 R915H probably benign Het
Large2 A G 2: 92,370,639 L64P probably damaging Het
Lztr1 C A 16: 17,522,453 Q136K probably damaging Het
Mageb18 A G X: 92,119,824 W271R possibly damaging Het
Magoh A C 4: 107,885,006 probably benign Het
Mrgprx1 T C 7: 48,021,486 H171R probably benign Het
Muc1 C A 3: 89,230,754 T301K probably benign Het
Nbas C T 12: 13,360,958 L868F probably damaging Het
Nwd2 A G 5: 63,806,529 D1152G possibly damaging Het
Olfr493 C T 7: 108,346,949 A11T probably benign Het
Olfr77 G A 9: 19,920,949 V247M possibly damaging Het
Ovgp1 T A 3: 105,986,172 D420E possibly damaging Het
Pacsin3 A G 2: 91,263,776 D350G probably benign Het
Pcolce2 A T 9: 95,692,923 N309Y probably damaging Het
Pim2 C A X: 7,878,422 probably benign Het
Plcb1 A G 2: 134,813,659 Y53C probably damaging Het
Pogk T C 1: 166,408,478 E18G probably damaging Het
Pxdn T A 12: 30,001,937 D704E probably damaging Het
Rb1 C A 14: 73,205,870 S781I probably damaging Het
Rnpepl1 A G 1: 92,915,899 H247R possibly damaging Het
Scube1 A T 15: 83,613,570 F697I probably damaging Het
Sel1l3 G T 5: 53,116,333 H1064N probably damaging Het
Serinc3 A G 2: 163,636,911 Y99H probably damaging Het
Slc36a2 T A 11: 55,169,847 probably benign Het
Smarcc1 A C 9: 110,139,625 E130A possibly damaging Het
Strc A G 2: 121,370,795 M1273T probably benign Het
Tmem116 A G 5: 121,463,799 I21V probably benign Het
Tmem190 T C 7: 4,784,026 probably benign Het
Trim63 C T 4: 134,325,676 A316V probably benign Het
Ugt2b34 T C 5: 86,901,203 E321G probably damaging Het
Zfat T A 15: 68,110,504 R1053S probably damaging Het
Other mutations in Gsx2
AlleleSourceChrCoordTypePredicted EffectPPH Score
R0018:Gsx2 UTSW 5 75077167 missense probably damaging 1.00
R0018:Gsx2 UTSW 5 75077167 missense probably damaging 1.00
R0265:Gsx2 UTSW 5 75077068 missense probably damaging 1.00
R0496:Gsx2 UTSW 5 75077065 missense probably benign 0.26
R1017:Gsx2 UTSW 5 75077262 missense probably damaging 1.00
R2372:Gsx2 UTSW 5 75077052 missense probably damaging 1.00
R7226:Gsx2 UTSW 5 75075960 nonsense probably null
R7362:Gsx2 UTSW 5 75076104 missense possibly damaging 0.92
R7504:Gsx2 UTSW 5 75076399 splice site probably null
R8153:Gsx2 UTSW 5 75077055 missense probably damaging 1.00
R8725:Gsx2 UTSW 5 75076094 missense probably benign 0.00
R8852:Gsx2 UTSW 5 75076335 missense possibly damaging 0.81
Posted On2013-06-21