Mutagenetix > Incidental Mutation

Incidental Mutation 'R6363:Ptgfrn'

512571

Institutional Source

Beutler Lab

Gene Symbol

Ptgfrn

Ensembl Gene

ENSMUSG00000027864

Gene Name

prostaglandin F2 receptor negative regulator

Synonyms

4833445A08Rik, CD9P-1

MMRRC Submission

044513-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R6363 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

100947548-101017594 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 100952894 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Alanine at position 780 (V780A)

Ref Sequence

ENSEMBL: ENSMUSP00000099755 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000102694]

AlphaFold

Q9WV91

Predicted Effect

possibly damaging
Transcript: ENSMUST00000102694
AA Change: V780A

PolyPhen 2 Score 0.928 (Sensitivity: 0.81; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000099755
Gene: ENSMUSG00000027864
AA Change: V780A

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
IGv	38	121	3.01e-7	SMART
IG	154	264	1.54e-4	SMART
IG	284	390	1.11e-5	SMART
IG	414	532	1.72e-2	SMART
IG	556	676	9.71e-2	SMART
IG	696	822	5.21e-2	SMART
transmembrane domain	831	853	N/A	INTRINSIC
low complexity region	862	872	N/A	INTRINSIC

Meta Mutation Damage Score

0.2216

Coding Region Coverage

1x: 99.9%
3x: 99.5%
10x: 97.4%
20x: 91.9%

Validation Efficiency

98% (51/52)

MGI Phenotype

PHENOTYPE: Homozygous mice for a null gene trap mutation exhibit a decreased depressive-like response during tail suspension testing when compared with their wild-type littermates, [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 51 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Agbl4	A	G	4: 111,423,982 (GRCm39)		probably benign	Het
Antxrl	G	T	14: 33,791,244 (GRCm39)	C379F	probably damaging	Het
Camsap3	T	C	8: 3,651,971 (GRCm39)	C256R	probably damaging	Het
Ccdc33	T	C	9: 58,021,618 (GRCm39)	E254G	probably benign	Het
Ccndbp1	C	T	2: 120,843,454 (GRCm39)	P282L	probably damaging	Het
Col5a1	C	T	2: 27,818,207 (GRCm39)	T144I	unknown	Het
Csmd2	A	T	4: 128,294,172 (GRCm39)	H1167L	probably benign	Het
Ctsk	A	T	3: 95,408,862 (GRCm39)	T82S	probably damaging	Het
Cyp3a41b	A	T	5: 145,507,197 (GRCm39)	F248I	probably damaging	Het
Dchs1	A	G	7: 105,407,679 (GRCm39)	I2051T	probably benign	Het
Dnah17	A	G	11: 118,001,331 (GRCm39)	F871L	probably benign	Het
Eif2b4	A	G	5: 31,348,583 (GRCm39)	V210A	probably damaging	Het
Eral1	A	G	11: 77,965,143 (GRCm39)	I385T	probably damaging	Het
Ercc8	T	C	13: 108,320,404 (GRCm39)	L330P	probably damaging	Het
Etfa	A	G	9: 55,407,417 (GRCm39)	V24A	probably damaging	Het
Fcrl1	A	T	3: 87,292,475 (GRCm39)	I156F	probably damaging	Het
Gm7298	A	G	6: 121,765,565 (GRCm39)	Y1465C	probably damaging	Het
Gpr17	A	G	18: 32,080,625 (GRCm39)	L146P	probably damaging	Het
Gpr171	A	G	3: 59,005,313 (GRCm39)	I154T	possibly damaging	Het
Hid1	T	A	11: 115,243,422 (GRCm39)	Y542F	probably damaging	Het
Hspa8	T	C	9: 40,714,361 (GRCm39)	V219A	probably damaging	Het
Klhl24	C	T	16: 19,938,933 (GRCm39)	T496I	possibly damaging	Het
Krtcap2	T	C	3: 89,156,413 (GRCm39)	S64P	probably damaging	Het
Msh3	C	A	13: 92,349,032 (GRCm39)	D1066Y	probably damaging	Het
Naaladl2	C	T	3: 24,389,481 (GRCm39)	G323R	possibly damaging	Het
Nbas	A	G	12: 13,532,577 (GRCm39)	T1762A	probably benign	Het
Nr4a1	C	T	15: 101,171,996 (GRCm39)	R557C	probably damaging	Het
Ogfrl1	T	A	1: 23,409,194 (GRCm39)	H344L	probably benign	Het
Or13a25	T	A	7: 140,247,995 (GRCm39)	F265Y	possibly damaging	Het
Or5a1	T	A	19: 12,097,530 (GRCm39)	H182L	possibly damaging	Het
Or5p55	A	G	7: 107,566,957 (GRCm39)	M118V	possibly damaging	Het
Or9k7	A	C	10: 130,046,906 (GRCm39)	V31G	possibly damaging	Het
Orm2	G	A	4: 63,280,841 (GRCm39)		probably null	Het
Patj	T	A	4: 98,320,097 (GRCm39)	S455T	probably benign	Het
Pdgfra	G	T	5: 75,331,497 (GRCm39)	V336L	possibly damaging	Het
Prkaa1	T	C	15: 5,206,437 (GRCm39)	L431S	probably damaging	Het
Rb1	A	T	14: 73,525,081 (GRCm39)	V184E	probably benign	Het
Rev1	T	A	1: 38,110,570 (GRCm39)	H560L	probably damaging	Het
Serpinb13	A	T	1: 106,928,504 (GRCm39)	R375*	probably null	Het
Slc8a2	C	A	7: 15,867,970 (GRCm39)	D67E	probably benign	Het
Sos2	A	T	12: 69,678,885 (GRCm39)	N307K	probably benign	Het
Srgap2	G	A	1: 131,226,206 (GRCm39)	R36W	probably damaging	Het
Tas2r119	G	T	15: 32,178,034 (GRCm39)	W200L	possibly damaging	Het
Tep1	T	G	14: 51,062,005 (GRCm39)	K2575T	probably benign	Het
Ttc36	T	A	9: 44,710,936 (GRCm39)	R131S	probably damaging	Het
Ttyh3	A	T	5: 140,620,979 (GRCm39)	L195Q	probably damaging	Het
Uba7	G	A	9: 107,857,382 (GRCm39)		probably null	Het
Utp20	A	C	10: 88,592,942 (GRCm39)	V2249G	probably damaging	Het
Wwc2	A	T	8: 48,340,197 (GRCm39)		probably null	Het
Zdhhc21	A	T	4: 82,765,911 (GRCm39)	V8D	probably damaging	Het
Zfp719	A	G	7: 43,239,290 (GRCm39)	T293A	probably benign	Het

Other mutations in Ptgfrn

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00949:Ptgfrn	APN	3	100,980,161 (GRCm39)	missense	probably benign	0.01
IGL01710:Ptgfrn	APN	3	100,980,404 (GRCm39)	missense	probably damaging	0.98
IGL02557:Ptgfrn	APN	3	100,967,952 (GRCm39)	critical splice donor site	probably null
IGL02740:Ptgfrn	APN	3	100,980,253 (GRCm39)	missense	possibly damaging	0.84
IGL02817:Ptgfrn	APN	3	100,968,068 (GRCm39)	missense	probably benign
IGL02948:Ptgfrn	APN	3	100,980,135 (GRCm39)	missense	probably benign	0.21
R1540:Ptgfrn	UTSW	3	100,967,970 (GRCm39)	missense	probably benign	0.41
R1563:Ptgfrn	UTSW	3	100,967,967 (GRCm39)	missense	possibly damaging	0.67
R1730:Ptgfrn	UTSW	3	100,963,758 (GRCm39)	missense	possibly damaging	0.71
R1766:Ptgfrn	UTSW	3	100,957,438 (GRCm39)	missense	probably benign	0.00
R1783:Ptgfrn	UTSW	3	100,963,758 (GRCm39)	missense	possibly damaging	0.71
R1918:Ptgfrn	UTSW	3	100,963,623 (GRCm39)	missense	probably benign
R2113:Ptgfrn	UTSW	3	100,984,625 (GRCm39)	missense	probably benign	0.00
R2290:Ptgfrn	UTSW	3	100,984,677 (GRCm39)	missense	possibly damaging	0.77
R3522:Ptgfrn	UTSW	3	100,950,718 (GRCm39)	missense	probably damaging	1.00
R5223:Ptgfrn	UTSW	3	100,952,909 (GRCm39)	missense	probably benign	0.13
R5600:Ptgfrn	UTSW	3	100,963,566 (GRCm39)	missense	probably damaging	0.99
R5642:Ptgfrn	UTSW	3	100,950,678 (GRCm39)	missense	probably damaging	1.00
R5927:Ptgfrn	UTSW	3	100,967,968 (GRCm39)	missense	possibly damaging	0.92
R5984:Ptgfrn	UTSW	3	100,957,459 (GRCm39)	missense	probably damaging	0.99
R6124:Ptgfrn	UTSW	3	100,980,405 (GRCm39)	missense	probably damaging	0.98
R6331:Ptgfrn	UTSW	3	100,952,936 (GRCm39)	missense	possibly damaging	0.64
R6473:Ptgfrn	UTSW	3	100,952,955 (GRCm39)	missense	probably damaging	1.00
R6856:Ptgfrn	UTSW	3	100,952,762 (GRCm39)	missense	probably damaging	1.00
R7151:Ptgfrn	UTSW	3	100,987,511 (GRCm39)	nonsense	probably null
R7313:Ptgfrn	UTSW	3	100,980,363 (GRCm39)	missense	possibly damaging	0.84
R7361:Ptgfrn	UTSW	3	100,984,760 (GRCm39)	missense	probably benign	0.03
R7806:Ptgfrn	UTSW	3	100,984,448 (GRCm39)	missense	possibly damaging	0.50
R7823:Ptgfrn	UTSW	3	100,950,725 (GRCm39)	missense	probably damaging	1.00
R7841:Ptgfrn	UTSW	3	100,968,126 (GRCm39)	missense	probably damaging	0.98
R8093:Ptgfrn	UTSW	3	100,980,257 (GRCm39)	missense	probably benign	0.09
R8093:Ptgfrn	UTSW	3	100,963,753 (GRCm39)	missense	probably benign	0.19
R8490:Ptgfrn	UTSW	3	100,963,686 (GRCm39)	missense	probably damaging	0.99
R8856:Ptgfrn	UTSW	3	100,963,927 (GRCm39)	missense	possibly damaging	0.86
Z1088:Ptgfrn	UTSW	3	100,963,753 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GTATGTGCTGCAGTACAACTCG -3'
(R):5'- ACACTCTGACCTCAGCATTTGG -3'

Sequencing Primer
(F):5'- CTCGGGAAGATACTTAGATACCCAG -3'
(R):5'- TGGCTCCGTAATCCACAGATG -3'

Posted On

2018-04-27