Incidental Mutation 'IGL01084:Gars'
ID51272
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Gars
Ensembl Gene ENSMUSG00000029777
Gene Nameglycyl-tRNA synthetase
SynonymsGENA202, Sgrp23, Gena201
Accession Numbers
Is this an essential gene? Essential (E-score: 1.000) question?
Stock #IGL01084
Quality Score
Status
Chromosome6
Chromosomal Location55038007-55079500 bp(+) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) C to A at 55055827 bp
ZygosityHeterozygous
Amino Acid Change Aspartic acid to Glutamic Acid at position 261 (D261E)
Ref Sequence ENSEMBL: ENSMUSP00000003572 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000003572]
Predicted Effect probably benign
Transcript: ENSMUST00000003572
AA Change: D261E

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
SMART Domains Protein: ENSMUSP00000003572
Gene: ENSMUSG00000029777
AA Change: D261E

DomainStartEndE-ValueType
low complexity region 4 27 N/A INTRINSIC
low complexity region 31 46 N/A INTRINSIC
WHEP-TRS 57 112 1.58e-8 SMART
Pfam:tRNA-synt_2b 281 582 2.1e-10 PFAM
Pfam:HGTP_anticodon 605 699 7.7e-24 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000203334
Predicted Effect noncoding transcript
Transcript: ENSMUST00000205258
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes glycyl-tRNA synthetase, one of the aminoacyl-tRNA synthetases that charge tRNAs with their cognate amino acids. The encoded enzyme is an (alpha)2 dimer which belongs to the class II family of tRNA synthetases. It has been shown to be a target of autoantibodies in the human autoimmune diseases, polymyositis or dermatomyositis. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Oct 2015]
PHENOTYPE: A dominant mutation results in sensory and motor axon degeneration in affected mice, with defects in synaptic transmission, nerve conduction and premature death. A loss of function mutation results in embryonic lethality in homozygous mice, and no discernable phenotype in heterozygous mice. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 40 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4930412O13Rik A G 2: 9,883,073 probably benign Het
Aagab C A 9: 63,639,619 Q284K probably damaging Het
Adgrd1 A T 5: 129,139,592 N341I probably benign Het
Arhgap40 T C 2: 158,543,218 F457S probably damaging Het
Cacng5 C T 11: 107,881,705 V106I probably benign Het
Catsper1 G A 19: 5,337,772 V360M probably damaging Het
Cdc42bpa T A 1: 180,142,274 probably benign Het
Cep250 C T 2: 155,998,393 H2424Y probably benign Het
Cln3 T C 7: 126,575,254 E304G probably damaging Het
Eml2 T A 7: 19,190,738 C177* probably null Het
Epha5 G A 5: 84,071,087 R917* probably null Het
Gabra2 A G 5: 71,006,233 F244L probably damaging Het
Keg1 A G 19: 12,714,612 K98E probably damaging Het
Kif13a A G 13: 46,750,634 probably benign Het
Matn1 A G 4: 130,951,934 K300E probably benign Het
Mesp1 A G 7: 79,793,083 S149P probably benign Het
Mmp10 T C 9: 7,505,650 V305A possibly damaging Het
Muc5b T C 7: 141,843,449 probably benign Het
Myof T C 19: 37,936,436 T1181A probably damaging Het
Olfr1161 T C 2: 88,025,003 S94P probably benign Het
Olfr1504 G T 19: 13,887,502 T236N probably damaging Het
Olfr398 A T 11: 73,984,527 L27Q probably damaging Het
Osbpl11 T C 16: 33,226,851 probably benign Het
Prune2 T C 19: 17,118,209 V359A probably benign Het
Ptch1 T A 13: 63,543,637 E267D probably damaging Het
Rbl2 A G 8: 91,122,313 E1049G probably damaging Het
Ruvbl2 A T 7: 45,422,523 probably null Het
Sec23b A G 2: 144,564,589 I101M possibly damaging Het
Srms A C 2: 181,206,384 probably null Het
Svep1 T A 4: 58,111,419 T1067S possibly damaging Het
Tedc1 C T 12: 113,163,188 R357* probably null Het
Tmem127 T C 2: 127,257,086 V180A probably damaging Het
Trpm7 A G 2: 126,846,072 probably null Het
Trpv3 G A 11: 73,294,000 probably null Het
Tti1 C T 2: 157,982,459 V1025I probably damaging Het
Vmn2r80 A G 10: 79,194,599 Y753C probably damaging Het
Vps13d A G 4: 145,154,955 L1350S probably benign Het
Zfp287 G T 11: 62,713,890 Y730* probably null Het
Zfp583 A G 7: 6,317,185 F276S probably damaging Het
Zfp638 T C 6: 83,944,798 Y636H probably benign Het
Other mutations in Gars
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00818:Gars APN 6 55050353 missense probably damaging 1.00
IGL01514:Gars APN 6 55065520 missense probably benign 0.01
IGL02104:Gars APN 6 55077697 missense probably damaging 1.00
IGL02349:Gars APN 6 55048064 splice site probably benign
IGL02371:Gars APN 6 55065467 missense probably benign 0.08
IGL02932:Gars APN 6 55060944 missense probably damaging 1.00
BB006:Gars UTSW 6 55063117 missense probably damaging 1.00
BB016:Gars UTSW 6 55063117 missense probably damaging 1.00
IGL02799:Gars UTSW 6 55063099 missense probably damaging 1.00
R0637:Gars UTSW 6 55069487 critical splice donor site probably null
R0762:Gars UTSW 6 55077580 splice site probably null
R1451:Gars UTSW 6 55053123 splice site probably benign
R1846:Gars UTSW 6 55063168 missense probably benign 0.05
R1988:Gars UTSW 6 55077772 missense probably null 0.00
R2033:Gars UTSW 6 55077723 missense probably benign 0.02
R2566:Gars UTSW 6 55065563 missense probably damaging 1.00
R4706:Gars UTSW 6 55069378 missense probably damaging 0.99
R4854:Gars UTSW 6 55046418 missense probably damaging 0.99
R5055:Gars UTSW 6 55068092 missense probably damaging 1.00
R5558:Gars UTSW 6 55065607 missense probably damaging 1.00
R6306:Gars UTSW 6 55055824 missense probably damaging 1.00
R6821:Gars UTSW 6 55079338 missense probably benign 0.00
R7376:Gars UTSW 6 55073359 missense probably benign 0.00
R7505:Gars UTSW 6 55052177 missense probably benign 0.00
R7579:Gars UTSW 6 55077703 missense probably damaging 1.00
R7605:Gars UTSW 6 55077750 missense probably damaging 1.00
R7728:Gars UTSW 6 55050386 missense probably damaging 1.00
R7929:Gars UTSW 6 55063117 missense probably damaging 1.00
R8014:Gars UTSW 6 55073407 missense probably benign
R8391:Gars UTSW 6 55048142 missense probably damaging 1.00
R8418:Gars UTSW 6 55065461 missense probably damaging 0.99
R8704:Gars UTSW 6 55063230 missense probably damaging 0.98
Posted On2013-06-21