Incidental Mutation 'R6356:Lcn11'
ID 512996
Institutional Source Beutler Lab
Gene Symbol Lcn11
Ensembl Gene ENSMUSG00000069080
Gene Name lipocalin 11
Synonyms
Accession Numbers
Essential gene? Probably non essential (E-score: 0.066) question?
Stock # R6356 (G1)
Quality Score 225.009
Status Not validated
Chromosome 2
Chromosomal Location 25667029-25670291 bp(+) (GRCm39)
Type of Mutation nonsense
DNA Base Change (assembly) G to T at 25668132 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Glycine to Stop codon at position 97 (G97*)
Ref Sequence ENSEMBL: ENSMUSP00000088822 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000091278] [ENSMUST00000211245]
AlphaFold A2BHR2
Predicted Effect probably null
Transcript: ENSMUST00000091278
AA Change: G97*
SMART Domains Protein: ENSMUSP00000088822
Gene: ENSMUSG00000069080
AA Change: G97*

DomainStartEndE-ValueType
signal peptide 1 24 N/A INTRINSIC
Pfam:Lipocalin 34 172 7.5e-23 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000211245
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.4%
  • 10x: 97.4%
  • 20x: 91.9%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 47 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700017B05Rik A T 9: 57,161,292 (GRCm39) S152T probably benign Het
Aass A G 6: 23,093,901 (GRCm39) V140A probably damaging Het
Add1 A G 5: 34,776,740 (GRCm39) N32S probably null Het
Agap2 T C 10: 126,918,865 (GRCm39) S414P unknown Het
Arhgef38 A G 3: 132,846,638 (GRCm39) F376L probably benign Het
Cd22 A T 7: 30,577,127 (GRCm39) I60N probably damaging Het
Cdh23 T A 10: 60,274,626 (GRCm39) D488V probably damaging Het
Cfap251 G A 5: 123,392,729 (GRCm39) probably benign Het
Cox16 T G 12: 81,519,115 (GRCm39) D148A probably damaging Het
Dclre1b G A 3: 103,715,471 (GRCm39) T9I probably damaging Het
Dennd4c T C 4: 86,743,686 (GRCm39) V1176A probably benign Het
Echdc1 A C 10: 29,220,522 (GRCm39) probably null Het
Efcab3 A G 11: 104,784,533 (GRCm39) K2772E probably benign Het
Efnb3 G A 11: 69,446,966 (GRCm39) A248V probably benign Het
Glud1 A G 14: 34,033,173 (GRCm39) R107G probably benign Het
Gtf2h4 A G 17: 35,980,647 (GRCm39) S279P probably damaging Het
Hectd1 A G 12: 51,791,402 (GRCm39) C2579R probably damaging Het
Igkv15-103 A G 6: 68,414,441 (GRCm39) probably benign Het
Ivl CCTGCTGCTGCTGCT CCTGCTGCTGCT 3: 92,479,217 (GRCm39) probably benign Het
Krtap5-2 T C 7: 141,729,119 (GRCm39) probably benign Het
Lrrtm3 G A 10: 63,765,943 (GRCm39) T548M probably benign Het
Map3k2 A T 18: 32,345,023 (GRCm39) T283S probably damaging Het
Mast4 T C 13: 102,872,493 (GRCm39) K2292E possibly damaging Het
Med23 G T 10: 24,764,311 (GRCm39) C98F probably damaging Het
Morc1 T A 16: 48,257,652 (GRCm39) F26Y probably damaging Het
Muc5ac T A 7: 141,366,416 (GRCm39) M2160K probably benign Het
Myocd T C 11: 65,109,396 (GRCm39) probably null Het
Nup160 T A 2: 90,542,279 (GRCm39) probably null Het
Obi1 A G 14: 104,716,313 (GRCm39) S687P probably damaging Het
Olr1 A T 6: 129,470,522 (GRCm39) L215Q probably benign Het
Or5ak23 T A 2: 85,245,031 (GRCm39) Q64L probably damaging Het
Or6c216 T A 10: 129,678,477 (GRCm39) S145C probably benign Het
Pik3c2a T C 7: 115,947,440 (GRCm39) K1414R possibly damaging Het
Ppfibp2 T C 7: 107,280,976 (GRCm39) V96A probably benign Het
Prim1 T A 10: 127,859,704 (GRCm39) Y299N probably damaging Het
Rsf1 T C 7: 97,311,141 (GRCm39) S624P probably benign Het
Samd4b A T 7: 28,101,018 (GRCm39) I687N probably damaging Het
Sbf2 A T 7: 109,971,830 (GRCm39) F801L probably damaging Het
St6gal2 T C 17: 55,789,014 (GRCm39) I16T probably damaging Het
Tiam2 CGGG CGGGG 17: 3,464,897 (GRCm39) probably null Het
Trim8 T G 19: 46,503,797 (GRCm39) S450A probably benign Het
Trp53bp2 A G 1: 182,276,562 (GRCm39) T848A probably benign Het
Vmn2r24 A G 6: 123,783,368 (GRCm39) S523G possibly damaging Het
Vmn2r52 T A 7: 9,902,926 (GRCm39) M501L probably benign Het
Vmn2r68 C T 7: 84,883,048 (GRCm39) V235M possibly damaging Het
Zfhx3 G A 8: 109,673,251 (GRCm39) V1434M probably damaging Het
Zmym5 A T 14: 57,031,622 (GRCm39) N495K possibly damaging Het
Other mutations in Lcn11
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02904:Lcn11 APN 2 25,669,278 (GRCm39) missense probably null 0.00
R0220:Lcn11 UTSW 2 25,667,843 (GRCm39) missense probably benign 0.02
R0607:Lcn11 UTSW 2 25,669,305 (GRCm39) missense probably benign 0.00
R1104:Lcn11 UTSW 2 25,669,115 (GRCm39) unclassified probably benign
R2021:Lcn11 UTSW 2 25,668,097 (GRCm39) missense probably benign 0.34
R2331:Lcn11 UTSW 2 25,670,188 (GRCm39) missense possibly damaging 0.79
R4295:Lcn11 UTSW 2 25,668,111 (GRCm39) missense possibly damaging 0.83
R6109:Lcn11 UTSW 2 25,669,308 (GRCm39) missense possibly damaging 0.78
R6502:Lcn11 UTSW 2 25,669,103 (GRCm39) missense probably benign 0.08
R7754:Lcn11 UTSW 2 25,667,830 (GRCm39) missense probably benign 0.06
R7920:Lcn11 UTSW 2 25,669,343 (GRCm39) missense possibly damaging 0.70
R8389:Lcn11 UTSW 2 25,669,043 (GRCm39) missense probably damaging 0.97
R8752:Lcn11 UTSW 2 25,668,138 (GRCm39) missense probably damaging 1.00
R8765:Lcn11 UTSW 2 25,668,139 (GRCm39) missense probably damaging 1.00
R8881:Lcn11 UTSW 2 25,669,296 (GRCm39) missense probably benign 0.33
R8954:Lcn11 UTSW 2 25,669,265 (GRCm39) missense probably benign 0.01
Z1176:Lcn11 UTSW 2 25,667,736 (GRCm39) missense probably benign 0.00
Predicted Primers PCR Primer
(F):5'- ACTCTGAGAAGGCCTTGATGATC -3'
(R):5'- GACTGAGGGAGCACAGTTTG -3'

Sequencing Primer
(F):5'- AGAAGGCCTTGATGATCCTGTTG -3'
(R):5'- ACAGTTTGGAGCCACATCGTG -3'
Posted On 2018-04-27