Mutagenetix > Incidental Mutations

Incidental Mutation 'R6364:Otud4'

513419

Institutional Source

Beutler Lab

Gene Symbol

Otud4

Ensembl Gene

ENSMUSG00000036990

Gene Name

OTU domain containing 4

Synonyms

4930431L18Rik, D8Ertd69e

MMRRC Submission

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.117) question?

Stock #

R6364 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

79639618-79677724 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 79646341 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Serine at position 96 (N96S)

Ref Sequence

ENSEMBL: ENSMUSP00000134097 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000173078] [ENSMUST00000173286]

AlphaFold

B2RRE7

Predicted Effect

possibly damaging
Transcript: ENSMUST00000173078
AA Change: N96S

PolyPhen 2 Score 0.806 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000133939
Gene: ENSMUSG00000036990
AA Change: N96S

Domain	Start	End	E-Value	Type
Pfam:OTU	40	154	3.4e-17	PFAM
low complexity region	189	213	N/A	INTRINSIC
Blast:TUDOR	280	335	2e-7	BLAST
low complexity region	392	405	N/A	INTRINSIC
low complexity region	473	486	N/A	INTRINSIC
low complexity region	543	555	N/A	INTRINSIC
low complexity region	1014	1025	N/A	INTRINSIC
low complexity region	1082	1104	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000173286
AA Change: N96S

PolyPhen 2 Score 0.990 (Sensitivity: 0.72; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000134097
Gene: ENSMUSG00000036990
AA Change: N96S

Domain	Start	End	E-Value	Type
Pfam:OTU	40	149	5.3e-21	PFAM
low complexity region	189	213	N/A	INTRINSIC
Blast:TUDOR	280	334	9e-9	BLAST
low complexity region	391	404	N/A	INTRINSIC
low complexity region	472	485	N/A	INTRINSIC
low complexity region	542	554	N/A	INTRINSIC
low complexity region	1013	1024	N/A	INTRINSIC
low complexity region	1081	1103	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000173300

Meta Mutation Damage Score

0.0618

Coding Region Coverage

1x: 99.9%
3x: 99.5%
10x: 97.7%
20x: 92.8%

Validation Efficiency

99% (69/70)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Alternatively spliced transcript variants have been found for this gene. The smaller protein isoform encoded by the shorter transcript variant is found only in HIV-1 infected cells. [provided by RefSeq, Jul 2010]

Allele List at MGI

Other mutations in this stock

Total: 72 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adamts3	T	C	5: 89,721,814	Y234C	possibly damaging	Het
Als2cr12	G	T	1: 58,658,372	A403D	probably damaging	Het
Ambra1	C	A	2: 91,773,316	H548Q	possibly damaging	Het
Ap3d1	T	C	10: 80,710,494		probably null	Het
Apol11b	A	G	15: 77,638,058	V13A	possibly damaging	Het
Arhgdib	C	T	6: 136,932,255		probably null	Het
B3galt1	T	A	2: 68,118,672	S244T	probably damaging	Het
Bace2	A	G	16: 97,413,433	I274V	probably benign	Het
Bfsp2	A	T	9: 103,448,628	V272D	probably damaging	Het
Blm	A	T	7: 80,494,526	C782*	probably null	Het
Cfi	G	A	3: 129,872,846	S406N	probably benign	Het
Chd1l	G	A	3: 97,587,167	A399V	probably damaging	Het
Cic	C	A	7: 25,272,823	H660N	possibly damaging	Het
Cops3	A	G	11: 59,835,404		probably benign	Het
Dlec1	G	A	9: 119,121,871	V502I	possibly damaging	Het
Epop	A	G	11: 97,628,687	S199P	probably benign	Het
Evi5	G	T	5: 107,842,113	P80Q	probably damaging	Het
Faf1	T	C	4: 109,961,800	V623A	possibly damaging	Het
Fam129c	G	A	8: 71,599,089	G23S	probably benign	Het
Fam83c	T	C	2: 155,834,523	D109G	probably damaging	Het
Fam83d	T	C	2: 158,783,259		probably null	Het
Foxn3	T	C	12: 99,388,693	N71D	probably benign	Het
Gm7298	A	G	6: 121,779,443	R1016G	possibly damaging	Het
Grin2d	T	C	7: 45,858,454	E396G	possibly damaging	Het
Htra2	C	A	6: 83,053,046	V311F	probably damaging	Het
Kif6	A	T	17: 49,620,623	T33S	probably benign	Het
Kmt2c	T	C	5: 25,309,636	I3070V	probably null	Het
Krtap5-2	A	T	7: 142,175,063	C293*	probably null	Het
Lrp3	T	A	7: 35,203,709	D404V	probably benign	Het
Mc2r	T	G	18: 68,407,536	I229L	probably benign	Het
Mtnr1b	A	G	9: 15,863,004	M253T	possibly damaging	Het
Nfat5	A	G	8: 107,368,277	N531S	probably benign	Het
Npr2	T	A	4: 43,643,622	I550N	probably damaging	Het
Npy6r	T	C	18: 44,276,511	I333T	possibly damaging	Het
Nup88	C	T	11: 70,947,786	R468Q	probably benign	Het
Nup98	G	A	7: 102,176,315	T422I	probably damaging	Het
Olfr433	T	A	1: 174,042,212	H87Q	possibly damaging	Het
Oraov1	A	G	7: 144,919,268	D105G	probably benign	Het
Paqr6	T	C	3: 88,365,958	F86L	probably damaging	Het
Ppp4r3b	A	T	11: 29,188,035	T90S	probably benign	Het
Ptbp2	A	T	3: 119,740,442	N23K	probably damaging	Het
Ralgapb	G	T	2: 158,462,109	G596V	probably damaging	Het
Rdm1	G	A	11: 101,630,242	R94H	probably benign	Het
Rergl	A	T	6: 139,500,748	F28I	probably damaging	Het
Rif1	G	T	2: 52,107,669	S1000I	probably damaging	Het
Rnf141	C	T	7: 110,821,309	A163T	possibly damaging	Het
Scaf4	G	A	16: 90,260,248	Q72*	probably null	Het
Sdk1	G	T	5: 141,962,709	S603I	probably benign	Het
Sdsl	T	C	5: 120,460,609	I147M	probably damaging	Het
Serpina6	T	C	12: 103,654,236	N85D	probably benign	Het
Serpinf2	A	G	11: 75,436,489	I204T	probably damaging	Het
Shank2	A	G	7: 144,410,409	S795G	probably benign	Het
Simc1	C	T	13: 54,524,600	Q254*	probably null	Het
Slc30a3	G	A	5: 31,088,739	P216S	possibly damaging	Het
Smim14	T	A	5: 65,453,296	I53F	probably benign	Het
Sp3	T	C	2: 72,970,941	T243A	probably benign	Het
Srpk2	A	G	5: 23,540,467	F164L	probably damaging	Het
Stard9	T	C	2: 120,713,429	F4403L	probably damaging	Het
Tbc1d30	T	C	10: 121,294,725	T267A	possibly damaging	Het
Tgm7	T	A	2: 121,096,397	R424*	probably null	Het
Tmbim6	T	C	15: 99,406,185	L113P	probably damaging	Het
Tmcc1	G	A	6: 116,043,761		probably benign	Het
Tomm7	A	G	5: 23,844,030	L15P	probably damaging	Het
Tpcn1	T	C	5: 120,553,810	Y263C	probably damaging	Het
Trim34b	T	C	7: 104,336,526	F456S	probably damaging	Het
Uox	C	T	3: 146,624,577	R163*	probably null	Het
Vmn2r108	A	G	17: 20,470,998	I421T	probably benign	Het
Wdr43	A	G	17: 71,657,654	E676G	probably damaging	Het
Wdr60	A	T	12: 116,241,732	D412E	probably damaging	Het
Zcchc14	G	T	8: 121,604,859		probably benign	Het
Zfp64	C	A	2: 168,912,266	G25V	probably damaging	Het
Zswim8	C	A	14: 20,713,011	P326H	probably damaging	Het

Other mutations in Otud4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00088:Otud4	APN	8	79672881	missense	probably damaging	0.99
IGL01353:Otud4	APN	8	79665021	missense	probably benign
IGL01371:Otud4	APN	8	79673761	missense	probably damaging	1.00
IGL01782:Otud4	APN	8	79673011	missense	possibly damaging	0.95
IGL01912:Otud4	APN	8	79673837	missense	probably benign
IGL02294:Otud4	APN	8	79664977	splice site	probably benign
IGL02830:Otud4	APN	8	79673301	missense	probably benign	0.00
IGL03063:Otud4	APN	8	79663790	missense	probably benign	0.01
IGL03077:Otud4	APN	8	79673458	missense	probably damaging	0.97
R0437:Otud4	UTSW	8	79669997	missense	probably benign	0.02
R1024:Otud4	UTSW	8	79664093	missense	probably benign	0.01
R1118:Otud4	UTSW	8	79653351	splice site	probably benign
R1296:Otud4	UTSW	8	79673974	missense	unknown
R1321:Otud4	UTSW	8	79669950	missense	probably benign	0.03
R1674:Otud4	UTSW	8	79673147	missense	probably benign	0.12
R1736:Otud4	UTSW	8	79651665	splice site	probably benign
R1815:Otud4	UTSW	8	79639989	nonsense	probably null
R1950:Otud4	UTSW	8	79646332	missense	probably damaging	0.99
R1985:Otud4	UTSW	8	79640012	missense	probably damaging	1.00
R2173:Otud4	UTSW	8	79668464	missense	probably damaging	1.00
R2869:Otud4	UTSW	8	79661073	missense	possibly damaging	0.82
R2869:Otud4	UTSW	8	79661073	missense	possibly damaging	0.82
R2870:Otud4	UTSW	8	79661073	missense	possibly damaging	0.82
R2870:Otud4	UTSW	8	79661073	missense	possibly damaging	0.82
R2872:Otud4	UTSW	8	79661073	missense	possibly damaging	0.82
R2872:Otud4	UTSW	8	79661073	missense	possibly damaging	0.82
R2907:Otud4	UTSW	8	79673068	missense	probably benign	0.02
R3545:Otud4	UTSW	8	79665055	missense	probably damaging	1.00
R4628:Otud4	UTSW	8	79639968	missense	possibly damaging	0.73
R4790:Otud4	UTSW	8	79666773	missense	possibly damaging	0.82
R4989:Otud4	UTSW	8	79655689	missense	probably damaging	1.00
R5133:Otud4	UTSW	8	79655689	missense	probably damaging	1.00
R5134:Otud4	UTSW	8	79655689	missense	probably damaging	1.00
R5294:Otud4	UTSW	8	79672892	missense	possibly damaging	0.54
R5410:Otud4	UTSW	8	79672997	missense	probably benign	0.04
R5454:Otud4	UTSW	8	79651042	missense	possibly damaging	0.94
R5579:Otud4	UTSW	8	79664108	missense	probably benign
R5738:Otud4	UTSW	8	79673461	missense	probably benign	0.02
R5886:Otud4	UTSW	8	79672807	missense	probably damaging	1.00
R6062:Otud4	UTSW	8	79673896	missense	probably damaging	1.00
R6427:Otud4	UTSW	8	79668497	missense	probably benign	0.00
R6450:Otud4	UTSW	8	79672997	missense	probably benign	0.04
R6744:Otud4	UTSW	8	79673778	nonsense	probably null
R6773:Otud4	UTSW	8	79643806	missense	possibly damaging	0.95
R7046:Otud4	UTSW	8	79651042	missense	possibly damaging	0.94
R7142:Otud4	UTSW	8	79672762	splice site	probably null
R7420:Otud4	UTSW	8	79664108	missense	probably benign	0.11
R7470:Otud4	UTSW	8	79673360	missense	probably benign	0.00
R7670:Otud4	UTSW	8	79655864	splice site	probably null
R7736:Otud4	UTSW	8	79655765	missense	possibly damaging	0.53
R8229:Otud4	UTSW	8	79673975	missense	unknown
R8397:Otud4	UTSW	8	79669298	missense	probably benign	0.06
R8520:Otud4	UTSW	8	79659267	missense	probably damaging	1.00
R9041:Otud4	UTSW	8	79673812	missense	probably damaging	0.98
R9291:Otud4	UTSW	8	79646323	missense	probably damaging	1.00
X0024:Otud4	UTSW	8	79646310	missense	probably benign	0.01
Z1176:Otud4	UTSW	8	79658929	missense	probably benign
Z1177:Otud4	UTSW	8	79643811	nonsense	probably null
Z1177:Otud4	UTSW	8	79643812	missense	probably damaging	0.99
Z1177:Otud4	UTSW	8	79665027	missense	possibly damaging	0.80

Predicted Primers

PCR Primer
(F):5'- AGTAAATCTGTTGCTGCTTGGC -3'
(R):5'- GCTACATTCATATGCCATGACAAAC -3'

Sequencing Primer
(F):5'- AGATCACCTGGAGCTGGGTTC -3'
(R):5'- ACTAGCTCTGTAGACCAGACTGG -3'

Posted On

2018-04-27