Mutagenetix > Incidental Mutations

Incidental Mutation 'R6364:Scaf4'

513440

Institutional Source

Beutler Lab

Gene Symbol

Scaf4

Ensembl Gene

ENSMUSG00000022983

Gene Name

SR-related CTD-associated factor 4

Synonyms

Sfrs15, Sra4, Srsf15

MMRRC Submission

Accession Numbers

Is this an essential gene?

Possibly essential (E-score: 0.638) question?

Stock #

R6364 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

90225680-90284503 bp(-) (GRCm38)

Type of Mutation

nonsense

DNA Base Change (assembly)

G to A at 90260248 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Glutamine to Stop codon at position 72 (Q72*)

Ref Sequence

ENSEMBL: ENSMUSP00000156174 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000039280] [ENSMUST00000163419] [ENSMUST00000232371]

AlphaFold

Q7TSH6

Predicted Effect

probably null
Transcript: ENSMUST00000039280
AA Change: Q72*

SMART Domains

Protein: ENSMUSP00000044472
Gene: ENSMUSG00000022983
AA Change: Q72*

Domain	Start	End	E-Value	Type
RPR	6	136	7.8e-48	SMART
low complexity region	190	214	N/A	INTRINSIC
low complexity region	272	313	N/A	INTRINSIC
low complexity region	360	389	N/A	INTRINSIC
low complexity region	390	418	N/A	INTRINSIC
low complexity region	420	448	N/A	INTRINSIC
low complexity region	496	558	N/A	INTRINSIC
RRM	574	643	7.47e-14	SMART
low complexity region	719	757	N/A	INTRINSIC
low complexity region	762	829	N/A	INTRINSIC
low complexity region	871	886	N/A	INTRINSIC
low complexity region	937	980	N/A	INTRINSIC
low complexity region	983	997	N/A	INTRINSIC
low complexity region	1006	1046	N/A	INTRINSIC
low complexity region	1082	1096	N/A	INTRINSIC
low complexity region	1111	1145	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000163419
AA Change: Q72*

SMART Domains

Protein: ENSMUSP00000132250
Gene: ENSMUSG00000022983
AA Change: Q72*

Domain	Start	End	E-Value	Type
RPR	6	136	7.8e-48	SMART
low complexity region	190	214	N/A	INTRINSIC
low complexity region	272	313	N/A	INTRINSIC
low complexity region	360	389	N/A	INTRINSIC
low complexity region	390	418	N/A	INTRINSIC
low complexity region	420	448	N/A	INTRINSIC
low complexity region	496	554	N/A	INTRINSIC
RRM	570	639	7.47e-14	SMART
low complexity region	715	753	N/A	INTRINSIC
low complexity region	758	825	N/A	INTRINSIC
low complexity region	845	860	N/A	INTRINSIC
low complexity region	911	954	N/A	INTRINSIC
low complexity region	957	971	N/A	INTRINSIC
low complexity region	980	1020	N/A	INTRINSIC
low complexity region	1056	1070	N/A	INTRINSIC
low complexity region	1085	1119	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000231572

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000231776

Predicted Effect

probably null
Transcript: ENSMUST00000232371
AA Change: Q72*

Coding Region Coverage

1x: 99.9%
3x: 99.5%
10x: 97.7%
20x: 92.8%

Validation Efficiency

99% (69/70)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene likely encodes a member of the arginine/serine-rich splicing factor family. A similar protein in Rat appears to bind the large subunit of RNA polymerase II and provide a link between transcription and pre-mRNA splicing. Alternatively spliced transcript variants have been described. [provided by RefSeq, Feb 2009]

Allele List at MGI

Other mutations in this stock

Total: 72 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adamts3	T	C	5: 89,721,814	Y234C	possibly damaging	Het
Als2cr12	G	T	1: 58,658,372	A403D	probably damaging	Het
Ambra1	C	A	2: 91,773,316	H548Q	possibly damaging	Het
Ap3d1	T	C	10: 80,710,494		probably null	Het
Apol11b	A	G	15: 77,638,058	V13A	possibly damaging	Het
Arhgdib	C	T	6: 136,932,255		probably null	Het
B3galt1	T	A	2: 68,118,672	S244T	probably damaging	Het
Bace2	A	G	16: 97,413,433	I274V	probably benign	Het
Bfsp2	A	T	9: 103,448,628	V272D	probably damaging	Het
Blm	A	T	7: 80,494,526	C782*	probably null	Het
Cfi	G	A	3: 129,872,846	S406N	probably benign	Het
Chd1l	G	A	3: 97,587,167	A399V	probably damaging	Het
Cic	C	A	7: 25,272,823	H660N	possibly damaging	Het
Cops3	A	G	11: 59,835,404		probably benign	Het
Dlec1	G	A	9: 119,121,871	V502I	possibly damaging	Het
Epop	A	G	11: 97,628,687	S199P	probably benign	Het
Evi5	G	T	5: 107,842,113	P80Q	probably damaging	Het
Faf1	T	C	4: 109,961,800	V623A	possibly damaging	Het
Fam129c	G	A	8: 71,599,089	G23S	probably benign	Het
Fam83c	T	C	2: 155,834,523	D109G	probably damaging	Het
Fam83d	T	C	2: 158,783,259		probably null	Het
Foxn3	T	C	12: 99,388,693	N71D	probably benign	Het
Gm7298	A	G	6: 121,779,443	R1016G	possibly damaging	Het
Grin2d	T	C	7: 45,858,454	E396G	possibly damaging	Het
Htra2	C	A	6: 83,053,046	V311F	probably damaging	Het
Kif6	A	T	17: 49,620,623	T33S	probably benign	Het
Kmt2c	T	C	5: 25,309,636	I3070V	probably null	Het
Krtap5-2	A	T	7: 142,175,063	C293*	probably null	Het
Lrp3	T	A	7: 35,203,709	D404V	probably benign	Het
Mc2r	T	G	18: 68,407,536	I229L	probably benign	Het
Mtnr1b	A	G	9: 15,863,004	M253T	possibly damaging	Het
Nfat5	A	G	8: 107,368,277	N531S	probably benign	Het
Npr2	T	A	4: 43,643,622	I550N	probably damaging	Het
Npy6r	T	C	18: 44,276,511	I333T	possibly damaging	Het
Nup88	C	T	11: 70,947,786	R468Q	probably benign	Het
Nup98	G	A	7: 102,176,315	T422I	probably damaging	Het
Olfr433	T	A	1: 174,042,212	H87Q	possibly damaging	Het
Oraov1	A	G	7: 144,919,268	D105G	probably benign	Het
Otud4	A	G	8: 79,646,341	N96S	probably damaging	Het
Paqr6	T	C	3: 88,365,958	F86L	probably damaging	Het
Ppp4r3b	A	T	11: 29,188,035	T90S	probably benign	Het
Ptbp2	A	T	3: 119,740,442	N23K	probably damaging	Het
Ralgapb	G	T	2: 158,462,109	G596V	probably damaging	Het
Rdm1	G	A	11: 101,630,242	R94H	probably benign	Het
Rergl	A	T	6: 139,500,748	F28I	probably damaging	Het
Rif1	G	T	2: 52,107,669	S1000I	probably damaging	Het
Rnf141	C	T	7: 110,821,309	A163T	possibly damaging	Het
Sdk1	G	T	5: 141,962,709	S603I	probably benign	Het
Sdsl	T	C	5: 120,460,609	I147M	probably damaging	Het
Serpina6	T	C	12: 103,654,236	N85D	probably benign	Het
Serpinf2	A	G	11: 75,436,489	I204T	probably damaging	Het
Shank2	A	G	7: 144,410,409	S795G	probably benign	Het
Simc1	C	T	13: 54,524,600	Q254*	probably null	Het
Slc30a3	G	A	5: 31,088,739	P216S	possibly damaging	Het
Smim14	T	A	5: 65,453,296	I53F	probably benign	Het
Sp3	T	C	2: 72,970,941	T243A	probably benign	Het
Srpk2	A	G	5: 23,540,467	F164L	probably damaging	Het
Stard9	T	C	2: 120,713,429	F4403L	probably damaging	Het
Tbc1d30	T	C	10: 121,294,725	T267A	possibly damaging	Het
Tgm7	T	A	2: 121,096,397	R424*	probably null	Het
Tmbim6	T	C	15: 99,406,185	L113P	probably damaging	Het
Tmcc1	G	A	6: 116,043,761		probably benign	Het
Tomm7	A	G	5: 23,844,030	L15P	probably damaging	Het
Tpcn1	T	C	5: 120,553,810	Y263C	probably damaging	Het
Trim34b	T	C	7: 104,336,526	F456S	probably damaging	Het
Uox	C	T	3: 146,624,577	R163*	probably null	Het
Vmn2r108	A	G	17: 20,470,998	I421T	probably benign	Het
Wdr43	A	G	17: 71,657,654	E676G	probably damaging	Het
Wdr60	A	T	12: 116,241,732	D412E	probably damaging	Het
Zcchc14	G	T	8: 121,604,859		probably benign	Het
Zfp64	C	A	2: 168,912,266	G25V	probably damaging	Het
Zswim8	C	A	14: 20,713,011	P326H	probably damaging	Het

Other mutations in Scaf4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00465:Scaf4	APN	16	90247281	missense	unknown
IGL00536:Scaf4	APN	16	90257362	missense	unknown
IGL01122:Scaf4	APN	16	90248630	missense	unknown
IGL02015:Scaf4	APN	16	90258846	missense	unknown
IGL02074:Scaf4	APN	16	90242920	missense	unknown
IGL02555:Scaf4	APN	16	90250305	missense	unknown
IGL02735:Scaf4	APN	16	90245515	missense	unknown
FR4304:Scaf4	UTSW	16	90229854	small deletion	probably benign
FR4589:Scaf4	UTSW	16	90229854	small deletion	probably benign
R0217:Scaf4	UTSW	16	90242682	missense	probably damaging	0.99
R0410:Scaf4	UTSW	16	90260170	missense	unknown
R0681:Scaf4	UTSW	16	90249694	missense	unknown
R1099:Scaf4	UTSW	16	90263098	missense	unknown
R1510:Scaf4	UTSW	16	90245394	missense	unknown
R1694:Scaf4	UTSW	16	90229857	small deletion	probably benign
R2077:Scaf4	UTSW	16	90252435	missense	unknown
R2087:Scaf4	UTSW	16	90252425	missense	unknown
R2182:Scaf4	UTSW	16	90230140	missense	probably benign	0.15
R2698:Scaf4	UTSW	16	90244356	missense	unknown
R2925:Scaf4	UTSW	16	90250289	missense	unknown
R3025:Scaf4	UTSW	16	90251938	missense	unknown
R3236:Scaf4	UTSW	16	90260217	missense	unknown
R4207:Scaf4	UTSW	16	90260215	missense	unknown
R4584:Scaf4	UTSW	16	90229515	unclassified	probably benign
R4735:Scaf4	UTSW	16	90252432	missense	unknown
R4835:Scaf4	UTSW	16	90250307	missense	unknown
R4969:Scaf4	UTSW	16	90251943	nonsense	probably null
R5174:Scaf4	UTSW	16	90247174	missense	unknown
R5568:Scaf4	UTSW	16	90229857	small deletion	probably benign
R5615:Scaf4	UTSW	16	90251960	missense	unknown
R5638:Scaf4	UTSW	16	90244310	missense	unknown
R6470:Scaf4	UTSW	16	90229638	nonsense	probably null
R7049:Scaf4	UTSW	16	90260187	missense	unknown
R7198:Scaf4	UTSW	16	90252430	missense	unknown
R7446:Scaf4	UTSW	16	90258770	missense	unknown
R7501:Scaf4	UTSW	16	90230076	missense	unknown
R7580:Scaf4	UTSW	16	90229852	nonsense	probably null
R7631:Scaf4	UTSW	16	90229557	missense	unknown
R8380:Scaf4	UTSW	16	90260245	missense	unknown
R8963:Scaf4	UTSW	16	90229857	small deletion	probably benign
R9149:Scaf4	UTSW	16	90230166	missense	probably damaging	0.99
X0013:Scaf4	UTSW	16	90252291	missense	unknown

Predicted Primers

PCR Primer
(F):5'- CGTGAACGTAAGCATTGTGTG -3'
(R):5'- CGAGCTGATGTGTGACATAGTG -3'

Sequencing Primer
(F):5'- AGCATTGTGTGAGAAATATAAAGAGG -3'
(R):5'- AGACAGTTTTACTCTGTAGCCCTGG -3'

Posted On

2018-04-27