Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL01123:Lrrc23'

51349

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Lrrc23

Ensembl Gene

ENSMUSG00000030125

Gene Name

leucine rich repeat containing 23

Synonyms

Lrpb7, 4921537K05Rik

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

IGL01123

Quality Score

Status

Chromosome

Chromosomal Location

124746826-124756690 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to T at 124755782 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glutamic Acid at position 75 (D75E)

Ref Sequence

ENSEMBL: ENSMUSP00000122362 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000032218] [ENSMUST00000112475] [ENSMUST00000128697] [ENSMUST00000147669]

AlphaFold

O35125

Predicted Effect

probably benign
Transcript: ENSMUST00000032218
AA Change: D75E

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000032218
Gene: ENSMUSG00000030125
AA Change: D75E

Domain	Start	End	E-Value	Type
coiled coil region	12	40	N/A	INTRINSIC
Pfam:LRR_1	89	109	1.2e-2	PFAM
LRR	196	217	1.33e2	SMART
LRR	218	239	4.97e0	SMART
LRR	241	263	3.27e1	SMART
low complexity region	305	314	N/A	INTRINSIC
low complexity region	323	332	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000112475
AA Change: D75E

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000108094
Gene: ENSMUSG00000030125
AA Change: D75E

Domain	Start	End	E-Value	Type
coiled coil region	12	40	N/A	INTRINSIC
internal_repeat_1	90	182	7.1e-5	PROSPERO
LRR	196	217	1.33e2	SMART
LRR	218	239	4.97e0	SMART
LRR	241	263	3.27e1	SMART
low complexity region	305	314	N/A	INTRINSIC
low complexity region	323	332	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000128697
AA Change: D75E

PolyPhen 2 Score 0.035 (Sensitivity: 0.94; Specificity: 0.82)

SMART Domains

Protein: ENSMUSP00000122362
Gene: ENSMUSG00000030125
AA Change: D75E

Domain	Start	End	E-Value	Type
coiled coil region	12	40	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000132492

Predicted Effect

probably benign
Transcript: ENSMUST00000147669

Coding Region Coverage

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 46 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2310057J18Rik	G	T	10: 28,849,934 (GRCm39)	D167E	probably damaging	Het
Aadat	A	T	8: 60,979,648 (GRCm39)	E170V	probably benign	Het
Acsf2	T	C	11: 94,461,276 (GRCm39)	E300G	probably benign	Het
Agbl3	C	T	6: 34,823,911 (GRCm39)	Q859*	probably null	Het
Arhgap11a	T	C	2: 113,665,118 (GRCm39)		probably benign	Het
Arhgef40	C	A	14: 52,231,803 (GRCm39)	Q730K	probably damaging	Het
Armc3	C	T	2: 19,206,616 (GRCm39)	P13L	possibly damaging	Het
B3gnt2	T	A	11: 22,786,490 (GRCm39)	T233S	probably benign	Het
Bnc1	G	A	7: 81,623,455 (GRCm39)	Q591*	probably null	Het
Bsn	A	T	9: 107,993,185 (GRCm39)	F856I	probably damaging	Het
CK137956	T	A	4: 127,829,643 (GRCm39)	T558S	probably benign	Het
Coq8b	G	A	7: 26,939,509 (GRCm39)	V180I	probably damaging	Het
Csmd1	A	T	8: 17,584,944 (GRCm39)	L16Q	possibly damaging	Het
Dhx37	A	G	5: 125,496,152 (GRCm39)	S769P	possibly damaging	Het
Diras1	T	A	10: 80,858,249 (GRCm39)	M1L	probably damaging	Het
Fam161b	A	G	12: 84,404,438 (GRCm39)	W81R	probably benign	Het
Fat4	A	T	3: 39,011,418 (GRCm39)	I2173L	probably benign	Het
Fbn2	T	C	18: 58,237,153 (GRCm39)	T617A	possibly damaging	Het
Gabrq	G	A	X: 71,880,439 (GRCm39)	D311N	probably benign	Het
Isl2	G	T	9: 55,452,746 (GRCm39)	G335C	probably damaging	Het
Kbtbd7	T	C	14: 79,666,052 (GRCm39)	V628A	probably damaging	Het
Kmt2d	T	C	15: 98,735,029 (GRCm39)	M5378V	unknown	Het
Mab21l3	G	A	3: 101,742,446 (GRCm39)	T38M	probably benign	Het
Matn1	T	C	4: 130,677,322 (GRCm39)	I177T	possibly damaging	Het
Mtor	T	C	4: 148,537,494 (GRCm39)	S60P	probably benign	Het
Naip6	T	C	13: 100,440,946 (GRCm39)	E278G	probably benign	Het
Nsun6	T	C	2: 15,053,789 (GRCm39)	I7V	possibly damaging	Het
Pabpc6	A	T	17: 9,887,076 (GRCm39)	S492T	probably benign	Het
Pakap	C	T	4: 57,757,627 (GRCm39)	Q188*	probably null	Het
Pom121	A	T	5: 135,420,560 (GRCm39)	V287D	unknown	Het
Ptprq	A	T	10: 107,522,079 (GRCm39)	F624Y	probably damaging	Het
Ptprr	A	G	10: 116,024,222 (GRCm39)	T178A	probably benign	Het
Pygm	A	G	19: 6,441,424 (GRCm39)	N473S	probably benign	Het
Ros1	A	T	10: 51,996,905 (GRCm39)	Y1256N	probably damaging	Het
Scpep1	T	C	11: 88,832,154 (GRCm39)	N192S	possibly damaging	Het
Serpina1f	A	G	12: 103,660,265 (GRCm39)	S6P	possibly damaging	Het
Sgca	T	A	11: 94,863,113 (GRCm39)	Q80L	probably damaging	Het
Skint6	A	G	4: 112,661,879 (GRCm39)	L1235P	possibly damaging	Het
Slc23a2	A	C	2: 131,898,736 (GRCm39)	N600K	probably benign	Het
Spata20	T	C	11: 94,374,221 (GRCm39)	T350A	probably benign	Het
Syne1	G	T	10: 5,294,921 (GRCm39)	Y1227*	probably null	Het
Unc13c	T	C	9: 73,840,479 (GRCm39)	Y124C	probably benign	Het
Usp40	G	A	1: 87,913,845 (GRCm39)	T416I	probably benign	Het
Vmn1r200	T	C	13: 22,579,571 (GRCm39)	W116R	probably benign	Het
Vps4a	T	C	8: 107,765,851 (GRCm39)		probably benign	Het
Zfyve16	A	G	13: 92,629,030 (GRCm39)	V1469A	probably damaging	Het

Other mutations in Lrrc23

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00336:Lrrc23	APN	6	124,755,889 (GRCm39)	missense	probably damaging	1.00
IGL02429:Lrrc23	APN	6	124,755,130 (GRCm39)	missense	probably damaging	0.99
IGL02892:Lrrc23	APN	6	124,751,399 (GRCm39)	missense	probably benign	0.03
R0440:Lrrc23	UTSW	6	124,747,667 (GRCm39)	missense	probably benign	0.00
R0637:Lrrc23	UTSW	6	124,755,321 (GRCm39)	unclassified	probably benign
R1055:Lrrc23	UTSW	6	124,755,114 (GRCm39)	missense	probably damaging	1.00
R1125:Lrrc23	UTSW	6	124,753,145 (GRCm39)	missense	probably benign	0.06
R1531:Lrrc23	UTSW	6	124,753,077 (GRCm39)	missense	possibly damaging	0.91
R4156:Lrrc23	UTSW	6	124,747,804 (GRCm39)	nonsense	probably null
R4838:Lrrc23	UTSW	6	124,755,152 (GRCm39)	missense	probably benign	0.16
R5296:Lrrc23	UTSW	6	124,751,445 (GRCm39)	missense	probably damaging	0.98
R7211:Lrrc23	UTSW	6	124,755,152 (GRCm39)	missense	probably benign	0.16
R7426:Lrrc23	UTSW	6	124,756,088 (GRCm39)	missense	unknown
R7488:Lrrc23	UTSW	6	124,756,075 (GRCm39)	missense	unknown
R7583:Lrrc23	UTSW	6	124,756,541 (GRCm39)	start gained	probably benign
R7829:Lrrc23	UTSW	6	124,747,711 (GRCm39)	missense	probably benign	0.00
R8289:Lrrc23	UTSW	6	124,755,267 (GRCm39)	missense	probably damaging	1.00
R8726:Lrrc23	UTSW	6	124,753,043 (GRCm39)	missense	probably benign	0.03
R9196:Lrrc23	UTSW	6	124,755,189 (GRCm39)	missense	possibly damaging	0.77
R9384:Lrrc23	UTSW	6	124,755,189 (GRCm39)	missense	possibly damaging	0.77

Posted On

2013-06-21