Incidental Mutation 'R6373:Vmn1r19'
ID |
513625 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Vmn1r19
|
Ensembl Gene |
ENSMUSG00000115799 |
Gene Name |
vomeronasal 1 receptor 19 |
Synonyms |
V1rc27 |
MMRRC Submission |
044523-MU
|
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.094)
|
Stock # |
R6373 (G1)
|
Quality Score |
225.009 |
Status
|
Validated
|
Chromosome |
6 |
Chromosomal Location |
57381449-57382375 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
T to C
at 57382317 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Isoleucine to Threonine
at position 290
(I290T)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000087264
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000089830]
|
AlphaFold |
Q8R2C7 |
Predicted Effect |
unknown
Transcript: ENSMUST00000089830
AA Change: I290T
|
SMART Domains |
Protein: ENSMUSP00000087264 Gene: ENSMUSG00000115799 AA Change: I290T
Domain | Start | End | E-Value | Type |
Pfam:V1R
|
28 |
293 |
6.6e-58 |
PFAM |
|
Meta Mutation Damage Score |
0.0869 |
Coding Region Coverage |
- 1x: 99.9%
- 3x: 99.6%
- 10x: 98.3%
- 20x: 95.2%
|
Validation Efficiency |
95% (37/39) |
Allele List at MGI |
|
Other mutations in this stock |
Total: 40 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Abhd13 |
T |
C |
8: 10,038,240 (GRCm39) |
L279P |
probably damaging |
Het |
Aldh16a1 |
C |
G |
7: 44,795,695 (GRCm39) |
V373L |
probably benign |
Het |
Btn2a2 |
T |
C |
13: 23,665,999 (GRCm39) |
K278E |
probably benign |
Het |
Carns1 |
G |
T |
19: 4,216,515 (GRCm39) |
Q556K |
probably benign |
Het |
Chd1 |
A |
T |
17: 15,958,898 (GRCm39) |
E650V |
probably damaging |
Het |
Cobl |
A |
G |
11: 12,203,118 (GRCm39) |
S1195P |
probably damaging |
Het |
Deup1 |
T |
C |
9: 15,472,638 (GRCm39) |
H464R |
probably damaging |
Het |
Eva1a |
T |
C |
6: 82,068,847 (GRCm39) |
L58S |
probably damaging |
Het |
Fign |
A |
C |
2: 63,809,989 (GRCm39) |
M427R |
probably benign |
Het |
Gm6309 |
A |
T |
5: 146,107,085 (GRCm39) |
I87N |
probably damaging |
Het |
H2ac7 |
A |
G |
13: 23,759,027 (GRCm39) |
K128R |
probably benign |
Het |
Helz |
A |
G |
11: 107,486,010 (GRCm39) |
T140A |
probably benign |
Het |
Helz2 |
C |
T |
2: 180,875,260 (GRCm39) |
E1745K |
probably damaging |
Het |
Kif16b |
A |
T |
2: 142,541,618 (GRCm39) |
H1227Q |
possibly damaging |
Het |
Mab21l1 |
A |
T |
3: 55,690,505 (GRCm39) |
I31F |
possibly damaging |
Het |
Mex3c |
T |
C |
18: 73,723,065 (GRCm39) |
M386T |
probably benign |
Het |
Myh11 |
T |
A |
16: 14,022,994 (GRCm39) |
I1644F |
possibly damaging |
Het |
Nav2 |
C |
T |
7: 49,102,923 (GRCm39) |
P513S |
probably damaging |
Het |
Ncoa3 |
C |
T |
2: 165,901,267 (GRCm39) |
S953F |
possibly damaging |
Het |
Nmt2 |
A |
G |
2: 3,325,988 (GRCm39) |
T462A |
probably benign |
Het |
Nrxn2 |
T |
C |
19: 6,559,860 (GRCm39) |
I163T |
probably damaging |
Het |
Nrxn3 |
G |
C |
12: 89,943,237 (GRCm39) |
G122R |
probably damaging |
Het |
Or1e26 |
A |
G |
11: 73,479,724 (GRCm39) |
V280A |
probably benign |
Het |
Or5d20-ps1 |
T |
C |
2: 87,932,189 (GRCm39) |
I47M |
possibly damaging |
Het |
Parg |
T |
G |
14: 31,931,454 (GRCm39) |
|
probably null |
Het |
Pcdhb7 |
T |
A |
18: 37,475,264 (GRCm39) |
C133* |
probably null |
Het |
Ppihl |
A |
G |
5: 44,070,893 (GRCm39) |
T127A |
probably damaging |
Het |
Rigi |
A |
G |
4: 40,216,487 (GRCm39) |
Y504H |
possibly damaging |
Het |
Rpe |
T |
C |
1: 66,755,139 (GRCm39) |
F174L |
probably benign |
Het |
Rxrb |
A |
G |
17: 34,252,533 (GRCm39) |
N40S |
probably benign |
Het |
Ryr3 |
C |
A |
2: 112,486,889 (GRCm39) |
G3840W |
probably damaging |
Het |
Smurf2 |
A |
G |
11: 106,724,595 (GRCm39) |
L529P |
probably damaging |
Het |
Sntg2 |
C |
T |
12: 30,308,040 (GRCm39) |
R215H |
probably benign |
Het |
Spata20 |
A |
G |
11: 94,374,226 (GRCm39) |
V348A |
probably benign |
Het |
Spink5 |
A |
G |
18: 44,123,739 (GRCm39) |
E342G |
probably damaging |
Het |
St3gal1 |
A |
G |
15: 66,983,195 (GRCm39) |
V187A |
possibly damaging |
Het |
Syce1l |
T |
A |
8: 114,376,143 (GRCm39) |
M31K |
probably benign |
Het |
Ttn |
C |
T |
2: 76,618,960 (GRCm39) |
V14394I |
probably damaging |
Het |
Twnk |
G |
A |
19: 44,997,820 (GRCm39) |
V450M |
probably damaging |
Het |
Vangl1 |
T |
C |
3: 102,065,764 (GRCm39) |
K407R |
probably benign |
Het |
|
Other mutations in Vmn1r19 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00948:Vmn1r19
|
APN |
6 |
57,382,247 (GRCm39) |
missense |
probably benign |
0.03 |
IGL01287:Vmn1r19
|
APN |
6 |
57,382,179 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01516:Vmn1r19
|
APN |
6 |
57,381,857 (GRCm39) |
missense |
probably benign |
0.03 |
IGL01895:Vmn1r19
|
APN |
6 |
57,382,245 (GRCm39) |
missense |
probably benign |
0.02 |
IGL02676:Vmn1r19
|
APN |
6 |
57,382,025 (GRCm39) |
missense |
possibly damaging |
0.94 |
IGL03040:Vmn1r19
|
APN |
6 |
57,382,347 (GRCm39) |
missense |
unknown |
|
IGL03087:Vmn1r19
|
APN |
6 |
57,381,476 (GRCm39) |
missense |
probably benign |
0.01 |
PIT4802001:Vmn1r19
|
UTSW |
6 |
57,382,037 (GRCm39) |
missense |
probably damaging |
1.00 |
R0319:Vmn1r19
|
UTSW |
6 |
57,381,600 (GRCm39) |
missense |
possibly damaging |
0.93 |
R1368:Vmn1r19
|
UTSW |
6 |
57,381,656 (GRCm39) |
missense |
probably benign |
0.01 |
R1997:Vmn1r19
|
UTSW |
6 |
57,382,033 (GRCm39) |
missense |
probably damaging |
1.00 |
R2920:Vmn1r19
|
UTSW |
6 |
57,381,909 (GRCm39) |
missense |
probably benign |
0.03 |
R3857:Vmn1r19
|
UTSW |
6 |
57,382,098 (GRCm39) |
missense |
possibly damaging |
0.68 |
R4090:Vmn1r19
|
UTSW |
6 |
57,381,720 (GRCm39) |
missense |
probably damaging |
1.00 |
R4547:Vmn1r19
|
UTSW |
6 |
57,381,774 (GRCm39) |
missense |
possibly damaging |
0.56 |
R4823:Vmn1r19
|
UTSW |
6 |
57,382,219 (GRCm39) |
nonsense |
probably null |
|
R4951:Vmn1r19
|
UTSW |
6 |
57,381,927 (GRCm39) |
missense |
probably benign |
0.36 |
R5077:Vmn1r19
|
UTSW |
6 |
57,382,026 (GRCm39) |
missense |
probably benign |
0.00 |
R5459:Vmn1r19
|
UTSW |
6 |
57,381,475 (GRCm39) |
nonsense |
probably null |
|
R5625:Vmn1r19
|
UTSW |
6 |
57,382,281 (GRCm39) |
missense |
probably damaging |
1.00 |
R5690:Vmn1r19
|
UTSW |
6 |
57,381,780 (GRCm39) |
missense |
probably benign |
0.10 |
R5761:Vmn1r19
|
UTSW |
6 |
57,382,338 (GRCm39) |
missense |
unknown |
|
R6124:Vmn1r19
|
UTSW |
6 |
57,381,602 (GRCm39) |
missense |
probably benign |
0.02 |
R6476:Vmn1r19
|
UTSW |
6 |
57,381,578 (GRCm39) |
missense |
probably damaging |
0.99 |
R6938:Vmn1r19
|
UTSW |
6 |
57,381,992 (GRCm39) |
missense |
possibly damaging |
0.94 |
R7027:Vmn1r19
|
UTSW |
6 |
57,381,475 (GRCm39) |
nonsense |
probably null |
|
R7359:Vmn1r19
|
UTSW |
6 |
57,382,080 (GRCm39) |
missense |
probably damaging |
0.99 |
R7568:Vmn1r19
|
UTSW |
6 |
57,381,813 (GRCm39) |
missense |
possibly damaging |
0.69 |
R7893:Vmn1r19
|
UTSW |
6 |
57,381,664 (GRCm39) |
missense |
probably damaging |
1.00 |
R8481:Vmn1r19
|
UTSW |
6 |
57,381,932 (GRCm39) |
missense |
probably damaging |
0.99 |
R8487:Vmn1r19
|
UTSW |
6 |
57,382,166 (GRCm39) |
missense |
probably benign |
0.03 |
R8812:Vmn1r19
|
UTSW |
6 |
57,381,436 (GRCm39) |
start gained |
probably benign |
|
R8907:Vmn1r19
|
UTSW |
6 |
57,381,991 (GRCm39) |
missense |
probably benign |
|
R8976:Vmn1r19
|
UTSW |
6 |
57,381,719 (GRCm39) |
missense |
probably benign |
0.01 |
R9277:Vmn1r19
|
UTSW |
6 |
57,382,322 (GRCm39) |
missense |
unknown |
|
|
Predicted Primers |
PCR Primer
(F):5'- ACCCAAAACATCTTGCTGCTAG -3'
(R):5'- TAGGACTTGGCATCAGTAATGTC -3'
Sequencing Primer
(F):5'- AACATCTTGCTGCTAGTAGTTTTC -3'
(R):5'- GCACCTACAGTCATTTGAAACTG -3'
|
Posted On |
2018-04-27 |