Mutagenetix > Incidental Mutation

Incidental Mutation 'R6337:Irf9'

513772

Institutional Source

Beutler Lab

Gene Symbol

Irf9

Ensembl Gene

ENSMUSG00000002325

Gene Name

interferon regulatory factor 9

Synonyms

p48, Isgf3g, Irf-9

MMRRC Submission

044491-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.210) question?

Stock #

R6337 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

55841442-55847487 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 55843799 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Isoleucine at position 221 (V221I)

Ref Sequence

ENSEMBL: ENSMUSP00000120525 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000019443] [ENSMUST00000130697] [ENSMUST00000134863] [ENSMUST00000138037]

AlphaFold

Q61179

Predicted Effect

probably benign
Transcript: ENSMUST00000019443

SMART Domains

Protein: ENSMUSP00000019443
Gene: ENSMUSG00000047098

Domain	Start	End	E-Value	Type
low complexity region	10	21	N/A	INTRINSIC
Pfam:PUB	68	148	7.1e-17	PFAM
low complexity region	262	294	N/A	INTRINSIC
ZnF_RBZ	298	322	2.56e-1	SMART
ZnF_RBZ	346	370	6.93e-5	SMART
ZnF_RBZ	405	429	4.86e-1	SMART
Pfam:HOIP-UBA	477	622	2.4e-54	PFAM
Blast:RING	693	741	7e-25	BLAST
IBR	773	835	3.18e-14	SMART
IBR	847	924	5.35e-1	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000126269

Predicted Effect

probably benign
Transcript: ENSMUST00000130697
AA Change: V155I

PolyPhen 2 Score 0.253 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000120359
Gene: ENSMUSG00000002325
AA Change: V155I

Domain	Start	End	E-Value	Type
IRF	5	117	1.19e-53	SMART
low complexity region	158	182	N/A	INTRINSIC
low complexity region	185	194	N/A	INTRINSIC
IRF-3	211	377	1.13e-59	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000133903

Predicted Effect

possibly damaging
Transcript: ENSMUST00000134863
AA Change: V221I

PolyPhen 2 Score 0.623 (Sensitivity: 0.87; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000120525
Gene: ENSMUSG00000002325
AA Change: V221I

Domain	Start	End	E-Value	Type
low complexity region	34	58	N/A	INTRINSIC
IRF	71	183	1.19e-53	SMART
low complexity region	224	248	N/A	INTRINSIC
low complexity region	251	260	N/A	INTRINSIC
IRF-3	277	443	1.13e-59	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000136109

Predicted Effect

probably benign
Transcript: ENSMUST00000138037
AA Change: V173I

PolyPhen 2 Score 0.253 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000119477
Gene: ENSMUSG00000002325
AA Change: V173I

Domain	Start	End	E-Value	Type
IRF	23	135	1.19e-53	SMART
low complexity region	176	200	N/A	INTRINSIC
low complexity region	203	212	N/A	INTRINSIC
IRF-3	229	395	1.13e-59	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000227708

Predicted Effect

probably benign
Transcript: ENSMUST00000226275

Predicted Effect

probably benign
Transcript: ENSMUST00000140178

SMART Domains

Protein: ENSMUSP00000118215
Gene: ENSMUSG00000047098

Domain	Start	End	E-Value	Type
PDB:4OYJ\|M	2	85	1e-29	PDB
low complexity region	164	196	N/A	INTRINSIC
ZnF_RBZ	200	224	2.56e-1	SMART
ZnF_RBZ	248	272	6.93e-5	SMART
ZnF_RBZ	307	331	4.86e-1	SMART
Pfam:HOIP-UBA	369	468	1.1e-31	PFAM
Blast:RING	539	587	9e-25	BLAST
IBR	619	681	3.18e-14	SMART
IBR	693	770	5.35e-1	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000145680

Meta Mutation Damage Score

0.1795

Coding Region Coverage

1x: 99.9%
3x: 99.6%
10x: 98.0%
20x: 94.1%

Validation Efficiency

98% (61/62)

MGI Phenotype

PHENOTYPE: Mice homozygous for disruptions in this gene display an apparently normal phenotype. However, antivirus response induced by Ifn alfpha and Ifn gamma are impaired. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 62 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4933434E20Rik	T	G	3: 89,969,040 (GRCm39)	V221G	probably benign	Het
Abca12	G	A	1: 71,334,172 (GRCm39)	A1110V	probably damaging	Het
Acsl6	C	A	11: 54,231,368 (GRCm39)	P462T	probably damaging	Het
Acsm5	G	A	7: 119,133,458 (GRCm39)	A208T	probably benign	Het
Adcyap1	T	A	17: 93,509,709 (GRCm39)	Y53*	probably null	Het
Adgrg7	T	A	16: 56,572,788 (GRCm39)	I343F	probably damaging	Het
Agl	T	A	3: 116,580,426 (GRCm39)	K376M	possibly damaging	Het
Akna	A	G	4: 63,292,240 (GRCm39)	Y1142H	probably benign	Het
Anks1b	A	T	10: 90,757,158 (GRCm39)	T182S	probably benign	Het
Apol7e	T	A	15: 77,598,582 (GRCm39)	Y16N	possibly damaging	Het
Bptf	G	T	11: 106,949,605 (GRCm39)	T2238K	possibly damaging	Het
Ccdc87	A	G	19: 4,889,829 (GRCm39)	E107G	probably benign	Het
Ccng2	C	T	5: 93,418,780 (GRCm39)	A135V	probably benign	Het
Chd8	C	A	14: 52,441,566 (GRCm39)	R842L	probably damaging	Het
Cldn18	T	A	9: 99,591,995 (GRCm39)	T3S	probably benign	Het
Dhcr7	T	C	7: 143,390,468 (GRCm39)		probably null	Het
Dnah8	G	A	17: 30,967,542 (GRCm39)	D2585N	probably benign	Het
Dusp26	T	C	8: 31,586,325 (GRCm39)	V182A	probably damaging	Het
Eif3e	T	C	15: 43,115,692 (GRCm39)	D358G	possibly damaging	Het
Epha3	A	T	16: 63,388,806 (GRCm39)	L814H	probably damaging	Het
Flnc	A	G	6: 29,454,318 (GRCm39)	N1877S	probably damaging	Het
Fpgs	A	T	2: 32,577,953 (GRCm39)	Y156*	probably null	Het
Gm10549	C	A	18: 33,597,358 (GRCm39)		probably benign	Het
Gm11595	G	A	11: 99,663,381 (GRCm39)	R100C	unknown	Het
Gm5591	T	C	7: 38,221,319 (GRCm39)	D250G	probably benign	Het
Gtf2e2	C	T	8: 34,266,043 (GRCm39)	R240*	probably null	Het
Hells	G	T	19: 38,943,254 (GRCm39)	Q519H	probably benign	Het
Hscb	A	G	5: 110,987,360 (GRCm39)		probably null	Het
Inpp5k	T	A	11: 75,537,640 (GRCm39)	I350N	probably damaging	Het
Itga8	A	T	2: 12,258,280 (GRCm39)	Y261*	probably null	Het
Itprid2	G	A	2: 79,485,463 (GRCm39)	D506N	probably damaging	Het
Lama1	C	T	17: 68,093,014 (GRCm39)	T1684M	probably benign	Het
Lrp2	A	T	2: 69,268,811 (GRCm39)	H4157Q	probably damaging	Het
Nceh1	G	T	3: 27,276,956 (GRCm39)	R93L	probably damaging	Het
Nell2	A	G	15: 95,283,025 (GRCm39)	F339S	probably damaging	Het
Or2t49	A	T	11: 58,392,838 (GRCm39)	C181*	probably null	Het
Phf11a	C	A	14: 59,521,817 (GRCm39)	C118F	probably damaging	Het
Purg	A	G	8: 33,876,451 (GRCm39)	K30E	possibly damaging	Het
Qprt	C	T	7: 126,708,101 (GRCm39)	R110H	probably damaging	Het
Robo2	T	C	16: 73,725,039 (GRCm39)	T1055A	probably benign	Het
Serpina3a	T	C	12: 104,079,137 (GRCm39)	F10L	probably benign	Het
Sidt1	A	T	16: 44,121,298 (GRCm39)		probably null	Het
Slc4a4	T	A	5: 89,194,231 (GRCm39)	M237K	probably benign	Het
Slitrk5	A	T	14: 111,917,684 (GRCm39)	D436V	probably damaging	Het
Snd1	T	C	6: 28,888,288 (GRCm39)	Y908H	probably damaging	Het
Sorcs1	A	G	19: 50,132,562 (GRCm39)	V1132A	probably benign	Het
Speer3	A	G	5: 13,843,369 (GRCm39)	E92G	probably damaging	Het
Strada	T	C	11: 106,064,143 (GRCm39)	E58G	possibly damaging	Het
Tbx10	A	T	19: 4,047,312 (GRCm39)	K139*	probably null	Het
Tcf4	T	C	18: 69,766,651 (GRCm39)	Y25H	probably damaging	Het
Tmem108	C	T	9: 103,376,960 (GRCm39)	R163H	possibly damaging	Het
Top2b	A	G	14: 16,399,026 (GRCm38)	T549A	possibly damaging	Het
Tpcn2	A	G	7: 144,833,080 (GRCm39)	I46T	probably damaging	Het
Uox	C	T	3: 146,330,332 (GRCm39)	R163*	probably null	Het
Vipr2	T	A	12: 116,086,363 (GRCm39)	Y129*	probably null	Het
Vps37a	A	T	8: 40,993,749 (GRCm39)	Q248L	probably benign	Het
Wrap53	T	C	11: 69,468,511 (GRCm39)	I179V	probably benign	Het
Zan	G	A	5: 137,450,750 (GRCm39)	A1609V	unknown	Het
Zbtb17	G	A	4: 141,190,694 (GRCm39)	G171S	probably benign	Het
Zbtb5	G	A	4: 44,993,459 (GRCm39)	R642W	probably damaging	Het
Zfyve27	A	G	19: 42,171,096 (GRCm39)		probably null	Het
Zup1	T	C	10: 33,825,252 (GRCm39)	N77D	probably benign	Het

Other mutations in Irf9

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01285:Irf9	APN	14	55,845,058 (GRCm39)	missense	probably damaging	0.98
IGL02283:Irf9	APN	14	55,845,196 (GRCm39)	missense	probably damaging	1.00
IGL02317:Irf9	APN	14	55,845,196 (GRCm39)	missense	probably damaging	1.00
IGL02407:Irf9	APN	14	55,842,678 (GRCm39)	missense	possibly damaging	0.92
Adjunctive	UTSW	14	55,843,255 (GRCm39)	nonsense	probably null
Long_lost	UTSW	14	55,843,367 (GRCm39)	splice site	probably null
supportive	UTSW	14	55,846,247 (GRCm39)	missense	probably damaging	1.00
R0233:Irf9	UTSW	14	55,843,551 (GRCm39)	missense	probably benign	0.00
R0233:Irf9	UTSW	14	55,843,551 (GRCm39)	missense	probably benign	0.00
R1959:Irf9	UTSW	14	55,845,174 (GRCm39)	missense	possibly damaging	0.93
R2324:Irf9	UTSW	14	55,843,367 (GRCm39)	splice site	probably null
R4669:Irf9	UTSW	14	55,843,223 (GRCm39)	missense	probably benign
R4882:Irf9	UTSW	14	55,846,496 (GRCm39)	utr 3 prime	probably benign
R5393:Irf9	UTSW	14	55,843,914 (GRCm39)	unclassified	probably benign
R6072:Irf9	UTSW	14	55,843,284 (GRCm39)	missense	probably damaging	1.00
R6277:Irf9	UTSW	14	55,845,109 (GRCm39)	missense	probably benign	0.04
R6545:Irf9	UTSW	14	55,842,684 (GRCm39)	missense	probably damaging	1.00
R6993:Irf9	UTSW	14	55,846,414 (GRCm39)	missense	probably benign	0.06
R7956:Irf9	UTSW	14	55,846,481 (GRCm39)	missense	probably benign	0.00
R8145:Irf9	UTSW	14	55,843,255 (GRCm39)	nonsense	probably null
R8326:Irf9	UTSW	14	55,843,210 (GRCm39)	missense	probably benign	0.02
R9002:Irf9	UTSW	14	55,845,140 (GRCm39)	missense	possibly damaging	0.79
R9293:Irf9	UTSW	14	55,846,247 (GRCm39)	missense	probably damaging	1.00
R9672:Irf9	UTSW	14	55,842,129 (GRCm39)	missense	probably benign	0.05
R9747:Irf9	UTSW	14	55,844,045 (GRCm39)	missense	probably benign	0.00
RF014:Irf9	UTSW	14	55,843,334 (GRCm39)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- AGTATCAGTTGTGTGTCACCTGAG -3'
(R):5'- GAGGCAAAGGCACTGATCAC -3'

Sequencing Primer
(F):5'- TGTGTGTCACCTGAGAGGGAAG -3'
(R):5'- CACTCAGAGTGGGACTGAAGAGTC -3'

Posted On

2018-04-27