Mutagenetix > Incidental Mutation

Incidental Mutation 'R6337:Sidt1'

513778

Institutional Source

Beutler Lab

Gene Symbol

Sidt1

Ensembl Gene

ENSMUSG00000022696

Gene Name

SID1 transmembrane family, member 1

Synonyms

B830021E24Rik

MMRRC Submission

044491-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R6337 (G1)

Quality Score

181.009

Status

Validated

Chromosome

Chromosomal Location

44060543-44153559 bp(-) (GRCm39)

Type of Mutation

splice site (6 bp from exon)

DNA Base Change (assembly)

A to T at 44121298 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000115372 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000047446] [ENSMUST00000136381]

AlphaFold

Q6AXF6

Predicted Effect

probably null
Transcript: ENSMUST00000047446

SMART Domains

Protein: ENSMUSP00000038433
Gene: ENSMUSG00000022696

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
low complexity region	36	50	N/A	INTRINSIC
Pfam:SID-1_RNA_chan	184	832	1.8e-290	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000124651

Predicted Effect

probably null
Transcript: ENSMUST00000136381

SMART Domains

Protein: ENSMUSP00000115372
Gene: ENSMUSG00000022696

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
low complexity region	36	50	N/A	INTRINSIC
Pfam:SID-1_RNA_chan	184	827	1.3e-251	PFAM

Coding Region Coverage

1x: 99.9%
3x: 99.6%
10x: 98.0%
20x: 94.1%

Validation Efficiency

98% (61/62)

Allele List at MGI

Other mutations in this stock

Total: 62 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4933434E20Rik	T	G	3: 89,969,040 (GRCm39)	V221G	probably benign	Het
Abca12	G	A	1: 71,334,172 (GRCm39)	A1110V	probably damaging	Het
Acsl6	C	A	11: 54,231,368 (GRCm39)	P462T	probably damaging	Het
Acsm5	G	A	7: 119,133,458 (GRCm39)	A208T	probably benign	Het
Adcyap1	T	A	17: 93,509,709 (GRCm39)	Y53*	probably null	Het
Adgrg7	T	A	16: 56,572,788 (GRCm39)	I343F	probably damaging	Het
Agl	T	A	3: 116,580,426 (GRCm39)	K376M	possibly damaging	Het
Akna	A	G	4: 63,292,240 (GRCm39)	Y1142H	probably benign	Het
Anks1b	A	T	10: 90,757,158 (GRCm39)	T182S	probably benign	Het
Apol7e	T	A	15: 77,598,582 (GRCm39)	Y16N	possibly damaging	Het
Bptf	G	T	11: 106,949,605 (GRCm39)	T2238K	possibly damaging	Het
Ccdc87	A	G	19: 4,889,829 (GRCm39)	E107G	probably benign	Het
Ccng2	C	T	5: 93,418,780 (GRCm39)	A135V	probably benign	Het
Chd8	C	A	14: 52,441,566 (GRCm39)	R842L	probably damaging	Het
Cldn18	T	A	9: 99,591,995 (GRCm39)	T3S	probably benign	Het
Dhcr7	T	C	7: 143,390,468 (GRCm39)		probably null	Het
Dnah8	G	A	17: 30,967,542 (GRCm39)	D2585N	probably benign	Het
Dusp26	T	C	8: 31,586,325 (GRCm39)	V182A	probably damaging	Het
Eif3e	T	C	15: 43,115,692 (GRCm39)	D358G	possibly damaging	Het
Epha3	A	T	16: 63,388,806 (GRCm39)	L814H	probably damaging	Het
Flnc	A	G	6: 29,454,318 (GRCm39)	N1877S	probably damaging	Het
Fpgs	A	T	2: 32,577,953 (GRCm39)	Y156*	probably null	Het
Gm10549	C	A	18: 33,597,358 (GRCm39)		probably benign	Het
Gm11595	G	A	11: 99,663,381 (GRCm39)	R100C	unknown	Het
Gm5591	T	C	7: 38,221,319 (GRCm39)	D250G	probably benign	Het
Gtf2e2	C	T	8: 34,266,043 (GRCm39)	R240*	probably null	Het
Hells	G	T	19: 38,943,254 (GRCm39)	Q519H	probably benign	Het
Hscb	A	G	5: 110,987,360 (GRCm39)		probably null	Het
Inpp5k	T	A	11: 75,537,640 (GRCm39)	I350N	probably damaging	Het
Irf9	G	A	14: 55,843,799 (GRCm39)	V221I	possibly damaging	Het
Itga8	A	T	2: 12,258,280 (GRCm39)	Y261*	probably null	Het
Itprid2	G	A	2: 79,485,463 (GRCm39)	D506N	probably damaging	Het
Lama1	C	T	17: 68,093,014 (GRCm39)	T1684M	probably benign	Het
Lrp2	A	T	2: 69,268,811 (GRCm39)	H4157Q	probably damaging	Het
Nceh1	G	T	3: 27,276,956 (GRCm39)	R93L	probably damaging	Het
Nell2	A	G	15: 95,283,025 (GRCm39)	F339S	probably damaging	Het
Or2t49	A	T	11: 58,392,838 (GRCm39)	C181*	probably null	Het
Phf11a	C	A	14: 59,521,817 (GRCm39)	C118F	probably damaging	Het
Purg	A	G	8: 33,876,451 (GRCm39)	K30E	possibly damaging	Het
Qprt	C	T	7: 126,708,101 (GRCm39)	R110H	probably damaging	Het
Robo2	T	C	16: 73,725,039 (GRCm39)	T1055A	probably benign	Het
Serpina3a	T	C	12: 104,079,137 (GRCm39)	F10L	probably benign	Het
Slc4a4	T	A	5: 89,194,231 (GRCm39)	M237K	probably benign	Het
Slitrk5	A	T	14: 111,917,684 (GRCm39)	D436V	probably damaging	Het
Snd1	T	C	6: 28,888,288 (GRCm39)	Y908H	probably damaging	Het
Sorcs1	A	G	19: 50,132,562 (GRCm39)	V1132A	probably benign	Het
Speer3	A	G	5: 13,843,369 (GRCm39)	E92G	probably damaging	Het
Strada	T	C	11: 106,064,143 (GRCm39)	E58G	possibly damaging	Het
Tbx10	A	T	19: 4,047,312 (GRCm39)	K139*	probably null	Het
Tcf4	T	C	18: 69,766,651 (GRCm39)	Y25H	probably damaging	Het
Tmem108	C	T	9: 103,376,960 (GRCm39)	R163H	possibly damaging	Het
Top2b	A	G	14: 16,399,026 (GRCm38)	T549A	possibly damaging	Het
Tpcn2	A	G	7: 144,833,080 (GRCm39)	I46T	probably damaging	Het
Uox	C	T	3: 146,330,332 (GRCm39)	R163*	probably null	Het
Vipr2	T	A	12: 116,086,363 (GRCm39)	Y129*	probably null	Het
Vps37a	A	T	8: 40,993,749 (GRCm39)	Q248L	probably benign	Het
Wrap53	T	C	11: 69,468,511 (GRCm39)	I179V	probably benign	Het
Zan	G	A	5: 137,450,750 (GRCm39)	A1609V	unknown	Het
Zbtb17	G	A	4: 141,190,694 (GRCm39)	G171S	probably benign	Het
Zbtb5	G	A	4: 44,993,459 (GRCm39)	R642W	probably damaging	Het
Zfyve27	A	G	19: 42,171,096 (GRCm39)		probably null	Het
Zup1	T	C	10: 33,825,252 (GRCm39)	N77D	probably benign	Het

Other mutations in Sidt1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00709:Sidt1	APN	16	44,082,374 (GRCm39)	splice site	probably benign
IGL01103:Sidt1	APN	16	44,063,906 (GRCm39)	nonsense	probably null
IGL01725:Sidt1	APN	16	44,104,645 (GRCm39)	missense	probably benign	0.06
IGL02000:Sidt1	APN	16	44,106,732 (GRCm39)	missense	probably damaging	0.98
IGL02266:Sidt1	APN	16	44,075,348 (GRCm39)	missense	possibly damaging	0.90
IGL02309:Sidt1	APN	16	44,075,343 (GRCm39)	missense	probably benign	0.00
IGL02898:Sidt1	APN	16	44,102,858 (GRCm39)	missense	possibly damaging	0.87
R0282:Sidt1	UTSW	16	44,102,249 (GRCm39)	missense	possibly damaging	0.79
R0525:Sidt1	UTSW	16	44,079,809 (GRCm39)	missense	possibly damaging	0.64
R0927:Sidt1	UTSW	16	44,063,895 (GRCm39)	missense	probably benign	0.00
R1806:Sidt1	UTSW	16	44,102,234 (GRCm39)	missense	possibly damaging	0.46
R1911:Sidt1	UTSW	16	44,102,234 (GRCm39)	missense	possibly damaging	0.81
R3843:Sidt1	UTSW	16	44,104,587 (GRCm39)	missense	probably benign	0.04
R3848:Sidt1	UTSW	16	44,076,322 (GRCm39)	intron	probably benign
R4023:Sidt1	UTSW	16	44,102,249 (GRCm39)	missense	possibly damaging	0.79
R4026:Sidt1	UTSW	16	44,102,249 (GRCm39)	missense	possibly damaging	0.79
R4495:Sidt1	UTSW	16	44,102,841 (GRCm39)	missense	probably damaging	1.00
R4603:Sidt1	UTSW	16	44,075,389 (GRCm39)	missense	probably damaging	0.98
R4707:Sidt1	UTSW	16	44,090,221 (GRCm39)	nonsense	probably null
R5322:Sidt1	UTSW	16	44,101,985 (GRCm39)	intron	probably benign
R5921:Sidt1	UTSW	16	44,094,098 (GRCm39)	splice site	probably benign
R5980:Sidt1	UTSW	16	44,083,675 (GRCm39)	nonsense	probably null
R5982:Sidt1	UTSW	16	44,082,071 (GRCm39)	missense	probably damaging	1.00
R6063:Sidt1	UTSW	16	44,079,829 (GRCm39)	missense	probably benign	0.01
R6392:Sidt1	UTSW	16	44,111,657 (GRCm39)	missense	possibly damaging	0.47
R6855:Sidt1	UTSW	16	44,065,706 (GRCm39)	missense	probably null	1.00
R7092:Sidt1	UTSW	16	44,120,192 (GRCm39)	missense	possibly damaging	0.89
R7099:Sidt1	UTSW	16	44,063,860 (GRCm39)	missense	probably damaging	1.00
R7448:Sidt1	UTSW	16	44,106,763 (GRCm39)	nonsense	probably null
R7574:Sidt1	UTSW	16	44,079,848 (GRCm39)	missense	probably damaging	1.00
R8265:Sidt1	UTSW	16	44,088,250 (GRCm39)	missense	possibly damaging	0.79
R8379:Sidt1	UTSW	16	44,106,755 (GRCm39)	missense	probably benign	0.14
R8460:Sidt1	UTSW	16	44,107,705 (GRCm39)	nonsense	probably null
R8480:Sidt1	UTSW	16	44,065,529 (GRCm39)	missense	probably damaging	1.00
R8762:Sidt1	UTSW	16	44,152,707 (GRCm39)	missense	probably benign	0.16
R8954:Sidt1	UTSW	16	44,082,390 (GRCm39)	missense	probably benign	0.04
R8974:Sidt1	UTSW	16	44,101,980 (GRCm39)	makesense	probably null
R9362:Sidt1	UTSW	16	44,078,316 (GRCm39)	missense	possibly damaging	0.96
R9451:Sidt1	UTSW	16	44,075,392 (GRCm39)	critical splice acceptor site	probably null
R9669:Sidt1	UTSW	16	44,102,243 (GRCm39)	missense	probably damaging	1.00
R9737:Sidt1	UTSW	16	44,102,243 (GRCm39)	missense	probably damaging	1.00
Z1176:Sidt1	UTSW	16	44,079,845 (GRCm39)	missense	possibly damaging	0.90
Z1191:Sidt1	UTSW	16	44,078,294 (GRCm39)	critical splice donor site	probably null

Predicted Primers

PCR Primer
(F):5'- TATACCACTGATCAGCCTTGGG -3'
(R):5'- AAGACAACTTGGGGCGTTTGG -3'

Sequencing Primer
(F):5'- GGGCATCCACTGTTTGCAC -3'
(R):5'- TGCCTGTCATGAGAAGAAATGTCTG -3'

Posted On

2018-04-27