Incidental Mutation 'R6338:Frmpd1'
| ID |
514313 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Frmpd1
|
| Ensembl Gene |
ENSMUSG00000035615 |
| Gene Name |
FERM and PDZ domain containing 1 |
| Synonyms |
|
| MMRRC Submission |
044492-MU
|
| Accession Numbers |
|
| Essential gene? |
Non essential
(E-score: 0.000)
|
| Stock # |
R6338 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Not validated
|
| Chromosome |
4 |
| Chromosomal Location |
45184875-45285936 bp(+) (GRCm38) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
G to A
at 45274489 bp (GRCm38)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Valine to Isoleucine
at position 466
(V466I)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000103434
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000044773]
[ENSMUST00000107804]
|
| AlphaFold |
A2AKB4 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000044773
AA Change: V466I
PolyPhen 2
Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)
|
| SMART Domains |
Protein: ENSMUSP00000047232
Gene: ENSMUSG00000035615
AA Change: V466I
| Domain | Start | End | E-Value | Type |
|---|
|
PDZ
|
67 |
135 |
5.72e-10 |
SMART |
|
B41
|
177 |
401 |
4.85e-30 |
SMART |
|
low complexity region
|
523 |
537 |
N/A |
INTRINSIC |
|
low complexity region
|
578 |
597 |
N/A |
INTRINSIC |
|
PDB:4G2V|B
|
901 |
938 |
2e-15 |
PDB |
|
low complexity region
|
962 |
980 |
N/A |
INTRINSIC |
|
low complexity region
|
1019 |
1030 |
N/A |
INTRINSIC |
|
low complexity region
|
1115 |
1130 |
N/A |
INTRINSIC |
|
Blast:B41
|
1264 |
1488 |
3e-44 |
BLAST |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000107804
AA Change: V466I
PolyPhen 2
Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)
|
| SMART Domains |
Protein: ENSMUSP00000103434
Gene: ENSMUSG00000035615
AA Change: V466I
| Domain | Start | End | E-Value | Type |
|---|
|
PDZ
|
67 |
135 |
5.72e-10 |
SMART |
|
B41
|
177 |
401 |
4.85e-30 |
SMART |
|
low complexity region
|
523 |
537 |
N/A |
INTRINSIC |
|
low complexity region
|
578 |
597 |
N/A |
INTRINSIC |
|
PDB:4G2V|B
|
901 |
938 |
2e-15 |
PDB |
|
low complexity region
|
962 |
980 |
N/A |
INTRINSIC |
|
low complexity region
|
1019 |
1030 |
N/A |
INTRINSIC |
|
low complexity region
|
1115 |
1130 |
N/A |
INTRINSIC |
|
Blast:B41
|
1264 |
1488 |
3e-44 |
BLAST |
|
| Coding Region Coverage |
- 1x: 100.0%
- 3x: 99.7%
- 10x: 98.1%
- 20x: 93.8%
|
| Validation Efficiency |
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 56 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Acer3 |
T |
C |
7: 98,257,715 (GRCm38) |
Y128C |
probably damaging |
Het |
| Adam30 |
T |
G |
3: 98,161,541 (GRCm38) |
I102S |
probably damaging |
Het |
| Adcy8 |
A |
T |
15: 64,920,617 (GRCm38) |
D163E |
possibly damaging |
Het |
| Agrn |
C |
T |
4: 156,170,585 (GRCm38) |
E1614K |
probably benign |
Het |
| Aldh16a1 |
A |
T |
7: 45,141,961 (GRCm38) |
W107R |
probably damaging |
Het |
| Arfgef2 |
A |
G |
2: 166,845,570 (GRCm38) |
D238G |
probably damaging |
Het |
| Arhgap11a |
T |
C |
2: 113,833,725 (GRCm38) |
S738G |
probably benign |
Het |
| Arid5b |
C |
A |
10: 68,098,561 (GRCm38) |
G504* |
probably null |
Het |
| Carmil3 |
T |
C |
14: 55,499,849 (GRCm38) |
V763A |
possibly damaging |
Het |
| Cd209e |
T |
A |
8: 3,849,154 (GRCm38) |
D186V |
probably damaging |
Het |
| Cdh23 |
T |
C |
10: 60,413,151 (GRCm38) |
D882G |
probably damaging |
Het |
| Cdh4 |
T |
C |
2: 179,890,812 (GRCm38) |
V689A |
probably damaging |
Het |
| Cntn6 |
T |
A |
6: 104,726,139 (GRCm38) |
V174E |
probably damaging |
Het |
| Col7a1 |
C |
T |
9: 108,956,633 (GRCm38) |
T390M |
unknown |
Het |
| Crybg1 |
T |
C |
10: 43,992,509 (GRCm38) |
D1017G |
probably damaging |
Het |
| Csmd1 |
T |
G |
8: 15,932,492 (GRCm38) |
K2725T |
possibly damaging |
Het |
| Dnaaf2 |
T |
C |
12: 69,198,122 (GRCm38) |
E55G |
probably damaging |
Het |
| Fam13a |
A |
G |
6: 58,953,499 (GRCm38) |
V476A |
probably damaging |
Het |
| Fem1b |
A |
T |
9: 62,797,011 (GRCm38) |
D322E |
probably benign |
Het |
| Gm11639 |
C |
T |
11: 104,843,208 (GRCm38) |
R2027* |
probably null |
Het |
| Gm20671 |
A |
T |
5: 32,820,647 (GRCm38) |
D1794E |
probably damaging |
Het |
| Gpatch2 |
G |
T |
1: 187,225,514 (GRCm38) |
R22L |
probably damaging |
Het |
| Gtf2h1 |
A |
G |
7: 46,816,456 (GRCm38) |
T450A |
probably benign |
Het |
| Kcnc2 |
G |
C |
10: 112,271,856 (GRCm38) |
G51R |
probably benign |
Het |
| Krit1 |
T |
G |
5: 3,836,857 (GRCm38) |
M702R |
probably benign |
Het |
| Krt34 |
T |
C |
11: 100,038,490 (GRCm38) |
N298S |
probably benign |
Het |
| Lrrcc1 |
T |
A |
3: 14,547,316 (GRCm38) |
N376K |
possibly damaging |
Het |
| Myo15 |
A |
G |
11: 60,478,133 (GRCm38) |
E573G |
probably damaging |
Het |
| Olfr1224-ps1 |
T |
A |
2: 89,156,371 (GRCm38) |
K268I |
probably damaging |
Het |
| Olfr1390 |
A |
G |
11: 49,340,867 (GRCm38) |
S112G |
probably benign |
Het |
| Olfr366 |
A |
T |
2: 37,219,822 (GRCm38) |
D111V |
probably damaging |
Het |
| Olfr391-ps |
A |
T |
11: 73,799,319 (GRCm38) |
L146Q |
possibly damaging |
Het |
| Olfr661 |
T |
A |
7: 104,688,171 (GRCm38) |
V52E |
possibly damaging |
Het |
| Olfr736 |
T |
A |
14: 50,393,400 (GRCm38) |
F215I |
possibly damaging |
Het |
| Phf20 |
A |
T |
2: 156,273,686 (GRCm38) |
Q309L |
possibly damaging |
Het |
| Plcd1 |
G |
A |
9: 119,074,991 (GRCm38) |
R292C |
probably damaging |
Het |
| Pold3 |
A |
G |
7: 100,088,105 (GRCm38) |
V342A |
possibly damaging |
Het |
| Polr2a |
A |
T |
11: 69,739,679 (GRCm38) |
|
probably null |
Het |
| Ptprcap |
A |
G |
19: 4,156,224 (GRCm38) |
E102G |
probably benign |
Het |
| Rab11fip5 |
T |
C |
6: 85,341,378 (GRCm38) |
E843G |
possibly damaging |
Het |
| Rai14 |
T |
C |
15: 10,574,976 (GRCm38) |
D632G |
probably damaging |
Het |
| Rnf149 |
A |
T |
1: 39,560,742 (GRCm38) |
C268S |
probably null |
Het |
| Slc6a13 |
T |
A |
6: 121,334,839 (GRCm38) |
F392I |
probably damaging |
Het |
| Slc7a11 |
C |
T |
3: 50,384,043 (GRCm38) |
|
probably null |
Het |
| Slf1 |
T |
A |
13: 77,084,462 (GRCm38) |
|
probably null |
Het |
| Stard9 |
G |
A |
2: 120,697,485 (GRCm38) |
V1408I |
probably benign |
Het |
| Suclg1 |
T |
C |
6: 73,264,246 (GRCm38) |
I183T |
probably damaging |
Het |
| Syne1 |
T |
C |
10: 5,255,475 (GRCm38) |
E3497G |
probably benign |
Het |
| Tax1bp1 |
C |
T |
6: 52,729,376 (GRCm38) |
R121* |
probably null |
Het |
| Tdpoz2 |
C |
T |
3: 93,652,336 (GRCm38) |
V110I |
probably benign |
Het |
| Ubn2 |
A |
G |
6: 38,490,714 (GRCm38) |
T788A |
probably benign |
Het |
| Unc13c |
T |
A |
9: 73,734,447 (GRCm38) |
I1255F |
probably damaging |
Het |
| Usp44 |
G |
T |
10: 93,846,513 (GRCm38) |
R275I |
probably damaging |
Het |
| Uspl1 |
A |
G |
5: 149,215,034 (GRCm38) |
N1015D |
probably benign |
Het |
| Wbp2nl |
G |
T |
15: 82,299,045 (GRCm38) |
W13C |
possibly damaging |
Het |
| Zc3h14 |
T |
A |
12: 98,758,590 (GRCm38) |
D170E |
possibly damaging |
Het |
|
| Other mutations in Frmpd1 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00095:Frmpd1
|
APN |
4 |
45,279,456 (GRCm38) |
missense |
possibly damaging |
0.61 |
|
IGL01678:Frmpd1
|
APN |
4 |
45,243,717 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL01815:Frmpd1
|
APN |
4 |
45,284,239 (GRCm38) |
missense |
probably benign |
|
|
IGL02305:Frmpd1
|
APN |
4 |
45,249,209 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL02347:Frmpd1
|
APN |
4 |
45,270,023 (GRCm38) |
splice site |
probably null |
|
|
IGL02586:Frmpd1
|
APN |
4 |
45,285,160 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL02704:Frmpd1
|
APN |
4 |
45,285,082 (GRCm38) |
missense |
possibly damaging |
0.83 |
|
IGL02942:Frmpd1
|
APN |
4 |
45,285,493 (GRCm38) |
missense |
probably damaging |
0.99 |
|
IGL03353:Frmpd1
|
APN |
4 |
45,261,926 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL03355:Frmpd1
|
APN |
4 |
45,279,140 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL03401:Frmpd1
|
APN |
4 |
45,284,383 (GRCm38) |
missense |
probably benign |
0.28 |
|
IGL03047:Frmpd1
|
UTSW |
4 |
45,283,993 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R0094:Frmpd1
|
UTSW |
4 |
45,284,899 (GRCm38) |
nonsense |
probably null |
|
|
R0103:Frmpd1
|
UTSW |
4 |
45,229,884 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R0103:Frmpd1
|
UTSW |
4 |
45,229,884 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R0109:Frmpd1
|
UTSW |
4 |
45,279,340 (GRCm38) |
missense |
probably benign |
0.03 |
|
R0109:Frmpd1
|
UTSW |
4 |
45,279,340 (GRCm38) |
missense |
probably benign |
0.03 |
|
R0375:Frmpd1
|
UTSW |
4 |
45,284,196 (GRCm38) |
missense |
probably benign |
0.00 |
|
R0508:Frmpd1
|
UTSW |
4 |
45,284,938 (GRCm38) |
missense |
unknown |
|
|
R0524:Frmpd1
|
UTSW |
4 |
45,283,774 (GRCm38) |
missense |
probably benign |
0.00 |
|
R0524:Frmpd1
|
UTSW |
4 |
45,256,902 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R0625:Frmpd1
|
UTSW |
4 |
45,284,055 (GRCm38) |
missense |
probably benign |
|
|
R0825:Frmpd1
|
UTSW |
4 |
45,285,394 (GRCm38) |
missense |
possibly damaging |
0.93 |
|
R0926:Frmpd1
|
UTSW |
4 |
45,268,497 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R0975:Frmpd1
|
UTSW |
4 |
45,279,000 (GRCm38) |
missense |
probably benign |
0.01 |
|
R1465:Frmpd1
|
UTSW |
4 |
45,273,197 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1465:Frmpd1
|
UTSW |
4 |
45,273,197 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1573:Frmpd1
|
UTSW |
4 |
45,283,932 (GRCm38) |
missense |
probably benign |
0.01 |
|
R1938:Frmpd1
|
UTSW |
4 |
45,283,711 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R2334:Frmpd1
|
UTSW |
4 |
45,285,408 (GRCm38) |
missense |
probably damaging |
0.97 |
|
R2413:Frmpd1
|
UTSW |
4 |
45,278,969 (GRCm38) |
missense |
probably benign |
0.02 |
|
R2760:Frmpd1
|
UTSW |
4 |
45,244,667 (GRCm38) |
missense |
possibly damaging |
0.77 |
|
R3856:Frmpd1
|
UTSW |
4 |
45,283,698 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R3876:Frmpd1
|
UTSW |
4 |
45,284,093 (GRCm38) |
missense |
probably benign |
0.01 |
|
R4080:Frmpd1
|
UTSW |
4 |
45,284,382 (GRCm38) |
missense |
probably benign |
|
|
R4597:Frmpd1
|
UTSW |
4 |
45,274,441 (GRCm38) |
missense |
probably benign |
0.12 |
|
R4714:Frmpd1
|
UTSW |
4 |
45,284,785 (GRCm38) |
missense |
probably benign |
0.11 |
|
R4779:Frmpd1
|
UTSW |
4 |
45,229,865 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4957:Frmpd1
|
UTSW |
4 |
45,273,099 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5000:Frmpd1
|
UTSW |
4 |
45,261,931 (GRCm38) |
splice site |
probably null |
|
|
R5041:Frmpd1
|
UTSW |
4 |
45,278,878 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5228:Frmpd1
|
UTSW |
4 |
45,284,322 (GRCm38) |
missense |
probably damaging |
0.98 |
|
R5413:Frmpd1
|
UTSW |
4 |
45,249,196 (GRCm38) |
missense |
probably benign |
0.00 |
|
R5560:Frmpd1
|
UTSW |
4 |
45,243,697 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6133:Frmpd1
|
UTSW |
4 |
45,284,915 (GRCm38) |
missense |
probably benign |
0.01 |
|
R6158:Frmpd1
|
UTSW |
4 |
45,285,401 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6329:Frmpd1
|
UTSW |
4 |
45,268,551 (GRCm38) |
missense |
possibly damaging |
0.80 |
|
R6544:Frmpd1
|
UTSW |
4 |
45,279,024 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6728:Frmpd1
|
UTSW |
4 |
45,284,664 (GRCm38) |
missense |
probably benign |
|
|
R6748:Frmpd1
|
UTSW |
4 |
45,274,397 (GRCm38) |
missense |
probably benign |
0.08 |
|
R6798:Frmpd1
|
UTSW |
4 |
45,284,850 (GRCm38) |
missense |
probably benign |
0.17 |
|
R6828:Frmpd1
|
UTSW |
4 |
45,275,383 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R7002:Frmpd1
|
UTSW |
4 |
45,284,200 (GRCm38) |
missense |
probably benign |
|
|
R7258:Frmpd1
|
UTSW |
4 |
45,269,974 (GRCm38) |
missense |
possibly damaging |
0.79 |
|
R7295:Frmpd1
|
UTSW |
4 |
45,285,700 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7382:Frmpd1
|
UTSW |
4 |
45,278,880 (GRCm38) |
missense |
probably benign |
0.00 |
|
R7423:Frmpd1
|
UTSW |
4 |
45,256,948 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7451:Frmpd1
|
UTSW |
4 |
45,279,558 (GRCm38) |
missense |
probably benign |
0.11 |
|
R7492:Frmpd1
|
UTSW |
4 |
45,285,237 (GRCm38) |
missense |
possibly damaging |
0.71 |
|
R7524:Frmpd1
|
UTSW |
4 |
45,271,181 (GRCm38) |
missense |
probably benign |
0.16 |
|
R7610:Frmpd1
|
UTSW |
4 |
45,279,098 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7719:Frmpd1
|
UTSW |
4 |
45,284,841 (GRCm38) |
missense |
possibly damaging |
0.52 |
|
R7724:Frmpd1
|
UTSW |
4 |
45,229,888 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7891:Frmpd1
|
UTSW |
4 |
45,284,478 (GRCm38) |
missense |
probably benign |
0.06 |
|
R8010:Frmpd1
|
UTSW |
4 |
45,284,272 (GRCm38) |
missense |
possibly damaging |
0.51 |
|
R8260:Frmpd1
|
UTSW |
4 |
45,244,638 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R8528:Frmpd1
|
UTSW |
4 |
45,285,034 (GRCm38) |
missense |
probably benign |
|
|
R8794:Frmpd1
|
UTSW |
4 |
45,279,632 (GRCm38) |
missense |
probably benign |
0.00 |
|
R8798:Frmpd1
|
UTSW |
4 |
45,285,424 (GRCm38) |
missense |
possibly damaging |
0.95 |
|
R8954:Frmpd1
|
UTSW |
4 |
45,284,702 (GRCm38) |
missense |
probably benign |
0.02 |
|
R9058:Frmpd1
|
UTSW |
4 |
45,283,948 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R9178:Frmpd1
|
UTSW |
4 |
45,285,367 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R9281:Frmpd1
|
UTSW |
4 |
45,284,127 (GRCm38) |
missense |
probably benign |
0.11 |
|
R9408:Frmpd1
|
UTSW |
4 |
45,279,182 (GRCm38) |
missense |
probably benign |
0.00 |
|
R9532:Frmpd1
|
UTSW |
4 |
45,278,886 (GRCm38) |
missense |
|
|
|
Z1088:Frmpd1
|
UTSW |
4 |
45,284,080 (GRCm38) |
missense |
possibly damaging |
0.93 |
|
Z1177:Frmpd1
|
UTSW |
4 |
45,275,272 (GRCm38) |
missense |
probably damaging |
1.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- TGCGAATAGAAACTGATTTCCCTTC -3'
(R):5'- AGAGCGTCTTGGGATGATGC -3'
Sequencing Primer
(F):5'- ACCCGTCTGCAGTTACAGGATAG -3'
(R):5'- ATGCAGGCTCCGTTTGC -3'
|
| Posted On |
2018-04-27 |
Incidental Mutation