Mutagenetix > Incidental Mutation

Incidental Mutation 'R6338:Fam13a'

514320

Institutional Source

Beutler Lab

Gene Symbol

Fam13a

Ensembl Gene

ENSMUSG00000037709

Gene Name

family with sequence similarity 13, member A

Synonyms

D430015B01Rik

MMRRC Submission

Accession Numbers

Is this an essential gene?

Non essential (E-score: 0.000) question?

Stock #

R6338 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

58932090-59024549 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 58953499 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Valine to Alanine at position 476 (V476A)

Ref Sequence

ENSEMBL: ENSMUSP00000134135 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000089860] [ENSMUST00000173193]

AlphaFold

Q8BGI4

Predicted Effect

probably damaging
Transcript: ENSMUST00000089860
AA Change: V476A

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000087304
Gene: ENSMUSG00000037709
AA Change: V476A

Domain	Start	End	E-Value	Type
Blast:RhoGAP	19	128	6e-27	BLAST
low complexity region	136	147	N/A	INTRINSIC
low complexity region	159	171	N/A	INTRINSIC
low complexity region	173	185	N/A	INTRINSIC
coiled coil region	336	363	N/A	INTRINSIC
low complexity region	419	433	N/A	INTRINSIC
coiled coil region	620	645	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000173193
AA Change: V476A

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000134135
Gene: ENSMUSG00000037709
AA Change: V476A

Domain	Start	End	E-Value	Type
Blast:RhoGAP	21	128	6e-27	BLAST
low complexity region	136	147	N/A	INTRINSIC
low complexity region	159	171	N/A	INTRINSIC
low complexity region	173	185	N/A	INTRINSIC
coiled coil region	336	363	N/A	INTRINSIC
low complexity region	419	433	N/A	INTRINSIC
coiled coil region	592	617	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.7%
10x: 98.1%
20x: 93.8%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 56 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acer3	T	C	7: 98,257,715	Y128C	probably damaging	Het
Adam30	T	G	3: 98,161,541	I102S	probably damaging	Het
Adcy8	A	T	15: 64,920,617	D163E	possibly damaging	Het
Agrn	C	T	4: 156,170,585	E1614K	probably benign	Het
Aldh16a1	A	T	7: 45,141,961	W107R	probably damaging	Het
Arfgef2	A	G	2: 166,845,570	D238G	probably damaging	Het
Arhgap11a	T	C	2: 113,833,725	S738G	probably benign	Het
Arid5b	C	A	10: 68,098,561	G504*	probably null	Het
Carmil3	T	C	14: 55,499,849	V763A	possibly damaging	Het
Cd209e	T	A	8: 3,849,154	D186V	probably damaging	Het
Cdh23	T	C	10: 60,413,151	D882G	probably damaging	Het
Cdh4	T	C	2: 179,890,812	V689A	probably damaging	Het
Cntn6	T	A	6: 104,726,139	V174E	probably damaging	Het
Col7a1	C	T	9: 108,956,633	T390M	unknown	Het
Crybg1	T	C	10: 43,992,509	D1017G	probably damaging	Het
Csmd1	T	G	8: 15,932,492	K2725T	possibly damaging	Het
Dnaaf2	T	C	12: 69,198,122	E55G	probably damaging	Het
Fem1b	A	T	9: 62,797,011	D322E	probably benign	Het
Frmpd1	G	A	4: 45,274,489	V466I	probably benign	Het
Gm11639	C	T	11: 104,843,208	R2027*	probably null	Het
Gm20671	A	T	5: 32,820,647	D1794E	probably damaging	Het
Gpatch2	G	T	1: 187,225,514	R22L	probably damaging	Het
Gtf2h1	A	G	7: 46,816,456	T450A	probably benign	Het
Kcnc2	G	C	10: 112,271,856	G51R	probably benign	Het
Krit1	T	G	5: 3,836,857	M702R	probably benign	Het
Krt34	T	C	11: 100,038,490	N298S	probably benign	Het
Lrrcc1	T	A	3: 14,547,316	N376K	possibly damaging	Het
Myo15	A	G	11: 60,478,133	E573G	probably damaging	Het
Olfr1224-ps1	T	A	2: 89,156,371	K268I	probably damaging	Het
Olfr1390	A	G	11: 49,340,867	S112G	probably benign	Het
Olfr366	A	T	2: 37,219,822	D111V	probably damaging	Het
Olfr391-ps	A	T	11: 73,799,319	L146Q	possibly damaging	Het
Olfr661	T	A	7: 104,688,171	V52E	possibly damaging	Het
Olfr736	T	A	14: 50,393,400	F215I	possibly damaging	Het
Phf20	A	T	2: 156,273,686	Q309L	possibly damaging	Het
Plcd1	G	A	9: 119,074,991	R292C	probably damaging	Het
Pold3	A	G	7: 100,088,105	V342A	possibly damaging	Het
Polr2a	A	T	11: 69,739,679		probably null	Het
Ptprcap	A	G	19: 4,156,224	E102G	probably benign	Het
Rab11fip5	T	C	6: 85,341,378	E843G	possibly damaging	Het
Rai14	T	C	15: 10,574,976	D632G	probably damaging	Het
Rnf149	A	T	1: 39,560,742	C268S	probably null	Het
Slc6a13	T	A	6: 121,334,839	F392I	probably damaging	Het
Slc7a11	C	T	3: 50,384,043		probably null	Het
Slf1	T	A	13: 77,084,462		probably null	Het
Stard9	G	A	2: 120,697,485	V1408I	probably benign	Het
Suclg1	T	C	6: 73,264,246	I183T	probably damaging	Het
Syne1	T	C	10: 5,255,475	E3497G	probably benign	Het
Tax1bp1	C	T	6: 52,729,376	R121*	probably null	Het
Tdpoz2	C	T	3: 93,652,336	V110I	probably benign	Het
Ubn2	A	G	6: 38,490,714	T788A	probably benign	Het
Unc13c	T	A	9: 73,734,447	I1255F	probably damaging	Het
Usp44	G	T	10: 93,846,513	R275I	probably damaging	Het
Uspl1	A	G	5: 149,215,034	N1015D	probably benign	Het
Wbp2nl	G	T	15: 82,299,045	W13C	possibly damaging	Het
Zc3h14	T	A	12: 98,758,590	D170E	possibly damaging	Het

Other mutations in Fam13a

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00265:Fam13a	APN	6	58946126	missense	probably benign	0.03
IGL00467:Fam13a	APN	6	58940113	splice site	probably benign
IGL01288:Fam13a	APN	6	58956727	missense	probably damaging	1.00
IGL01503:Fam13a	APN	6	58956080	missense	probably damaging	1.00
IGL01532:Fam13a	APN	6	58940295	missense	probably damaging	0.96
IGL02197:Fam13a	APN	6	58935601	missense	possibly damaging	0.65
IGL02206:Fam13a	APN	6	58987219	missense	probably benign	0.00
IGL03189:Fam13a	APN	6	58956858	missense	probably damaging	0.99
BB009:Fam13a	UTSW	6	58983888	critical splice donor site	probably null
BB019:Fam13a	UTSW	6	58983888	critical splice donor site	probably null
R0361:Fam13a	UTSW	6	58987174	missense	probably benign
R0512:Fam13a	UTSW	6	58956699	missense	probably damaging	1.00
R0801:Fam13a	UTSW	6	58984012	missense	probably benign	0.01
R1222:Fam13a	UTSW	6	58935722	splice site	probably benign
R1378:Fam13a	UTSW	6	58956751	missense	probably benign	0.04
R1535:Fam13a	UTSW	6	58939347	missense	probably damaging	0.99
R1614:Fam13a	UTSW	6	58940184	missense	probably damaging	1.00
R1663:Fam13a	UTSW	6	58954372	nonsense	probably null
R1809:Fam13a	UTSW	6	58965060	critical splice donor site	probably null
R1905:Fam13a	UTSW	6	58953490	missense	probably damaging	1.00
R2568:Fam13a	UTSW	6	58935609	missense	probably damaging	1.00
R3771:Fam13a	UTSW	6	58987186	missense	probably benign	0.11
R4654:Fam13a	UTSW	6	58987167	missense	probably benign
R5244:Fam13a	UTSW	6	58953474	nonsense	probably null
R5488:Fam13a	UTSW	6	59024318	missense	probably null	1.00
R5489:Fam13a	UTSW	6	59024318	missense	probably null	1.00
R5712:Fam13a	UTSW	6	58956699	missense	probably damaging	1.00
R5729:Fam13a	UTSW	6	58939307	missense	probably damaging	0.99
R5969:Fam13a	UTSW	6	58965198	missense	probably damaging	1.00
R6074:Fam13a	UTSW	6	58989738	splice site	probably null
R6275:Fam13a	UTSW	6	58954257	missense	probably damaging	0.98
R6306:Fam13a	UTSW	6	58940254	missense	probably benign	0.02
R6603:Fam13a	UTSW	6	58987189	missense	probably benign	0.31
R7508:Fam13a	UTSW	6	58987284	missense	probably damaging	1.00
R7516:Fam13a	UTSW	6	58955263	missense	probably damaging	1.00
R7688:Fam13a	UTSW	6	58935707	missense	probably benign	0.05
R7728:Fam13a	UTSW	6	58954299	missense	possibly damaging	0.79
R7932:Fam13a	UTSW	6	58983888	critical splice donor site	probably null
R8080:Fam13a	UTSW	6	58956805	missense	probably damaging	1.00
R9494:Fam13a	UTSW	6	58953523	missense	probably benign	0.00
R9671:Fam13a	UTSW	6	58974029	critical splice donor site	probably null

Predicted Primers

PCR Primer
(F):5'- GGTGTGAATATGCATTAAGCTTCC -3'
(R):5'- GGTAGCTGATTACAATGGTCATCTG -3'

Sequencing Primer
(F):5'- GCATTAAGCTTCCTTTCTTGTACAAG -3'
(R):5'- GATTACAATGGTCATCTGCACTCTG -3'

Posted On

2018-04-27