Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL01066:Lypd5'

51434

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Lypd5

Ensembl Gene

ENSMUSG00000030484

Gene Name

Ly6/Plaur domain containing 5

Synonyms

2210003I03Rik, 2310011E23Rik

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

IGL01066

Quality Score

Status

Chromosome

Chromosomal Location

24048621-24053672 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 24052910 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Isoleucine at position 189 (T189I)

Ref Sequence

ENSEMBL: ENSMUSP00000032683 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000032683]

AlphaFold

Q9D7Z7

Predicted Effect

probably benign
Transcript: ENSMUST00000032683
AA Change: T189I

PolyPhen 2 Score 0.096 (Sensitivity: 0.93; Specificity: 0.85)

SMART Domains

Protein: ENSMUSP00000032683
Gene: ENSMUSG00000030484
AA Change: T189I

Domain	Start	End	E-Value	Type
signal peptide	1	23	N/A	INTRINSIC
Blast:LU	24	119	7e-38	BLAST
LU	132	225	1.19e-1	SMART
low complexity region	230	248	N/A	INTRINSIC

Coding Region Coverage

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 58 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1110038F14Rik	G	A	15: 76,834,475 (GRCm39)	V124I	probably damaging	Het
2300003K06Rik	T	A	11: 99,728,454 (GRCm39)	R130*	probably null	Het
Abca12	T	A	1: 71,392,889 (GRCm39)	R117W	possibly damaging	Het
Agrn	A	G	4: 156,261,800 (GRCm39)	S497P	probably benign	Het
Alpk1	A	T	3: 127,473,874 (GRCm39)	S710T	probably benign	Het
Anapc4	T	A	5: 53,014,551 (GRCm39)	N471K	probably benign	Het
Ano3	A	T	2: 110,491,790 (GRCm39)	M879K	probably null	Het
Apoe	A	G	7: 19,430,525 (GRCm39)	L239P	probably damaging	Het
Ash1l	T	C	3: 88,891,942 (GRCm39)	Y1274H	probably damaging	Het
B3glct	C	T	5: 149,632,890 (GRCm39)	T80I	possibly damaging	Het
Ccdc146	T	C	5: 21,524,540 (GRCm39)	T271A	probably benign	Het
Chd8	T	A	14: 52,455,223 (GRCm39)	N1088I	probably damaging	Het
Csnk1g2	T	C	10: 80,470,481 (GRCm39)		probably benign	Het
Daxx	T	A	17: 34,132,867 (GRCm39)	V627D	probably benign	Het
Dnai7	C	T	6: 145,121,948 (GRCm39)	G624S	probably damaging	Het
Dpy19l3	A	G	7: 35,392,192 (GRCm39)		probably benign	Het
Enc1	A	G	13: 97,381,822 (GRCm39)	I111V	probably benign	Het
Ep400	A	G	5: 110,816,065 (GRCm39)		probably benign	Het
Fig4	T	C	10: 41,161,413 (GRCm39)		probably benign	Het
Fkbp7	A	T	2: 76,503,252 (GRCm39)	L36*	probably null	Het
Fxn	A	T	19: 24,244,662 (GRCm39)		probably benign	Het
Gm10152	C	T	7: 144,316,993 (GRCm39)	P16L	unknown	Het
Hivep2	T	C	10: 14,024,768 (GRCm39)	V2194A	possibly damaging	Het
Hook3	T	G	8: 26,538,326 (GRCm39)	E525A	probably damaging	Het
Icam1	A	G	9: 20,927,401 (GRCm39)		probably null	Het
Ifngr1	C	T	10: 19,484,946 (GRCm39)	T315I	probably damaging	Het
Igsf10	A	G	3: 59,235,203 (GRCm39)		probably null	Het
Irag2	T	C	6: 145,106,681 (GRCm39)	S222P	probably damaging	Het
Krt87	A	G	15: 101,336,266 (GRCm39)		probably null	Het
Lama1	T	A	17: 68,050,321 (GRCm39)	C311S	probably damaging	Het
Lig3	T	A	11: 82,688,141 (GRCm39)	M714K	possibly damaging	Het
Mapk8ip3	C	T	17: 25,120,692 (GRCm39)	G807D	probably benign	Het
Met	T	C	6: 17,535,104 (GRCm39)		probably null	Het
Nlrp4g	C	A	9: 124,349,526 (GRCm38)		noncoding transcript	Het
Nlrp6	T	A	7: 140,501,709 (GRCm39)	V62D	possibly damaging	Het
Nme7	A	G	1: 164,172,999 (GRCm39)		probably null	Het
Or2y1f	T	C	11: 49,184,457 (GRCm39)	I103T	possibly damaging	Het
Or5m9	A	G	2: 85,877,602 (GRCm39)	R259G	probably damaging	Het
Or5p79	T	C	7: 108,221,064 (GRCm39)	F15S	probably damaging	Het
Pcnx1	G	A	12: 82,038,795 (GRCm39)	R2020Q	possibly damaging	Het
Pdzd2	T	A	15: 12,402,718 (GRCm39)		probably benign	Het
Pi4ka	A	G	16: 17,166,637 (GRCm39)		probably benign	Het
Pkdrej	T	G	15: 85,700,360 (GRCm39)	I1859L	probably benign	Het
Plcg1	A	T	2: 160,596,318 (GRCm39)	H638L	probably damaging	Het
Polr1b	C	T	2: 128,961,072 (GRCm39)	S677L	probably damaging	Het
Ppef2	A	G	5: 92,382,096 (GRCm39)	L533P	probably damaging	Het
Sh3rf1	T	A	8: 61,782,370 (GRCm39)	W171R	probably damaging	Het
Son	T	C	16: 91,457,024 (GRCm39)		probably benign	Het
Sycp1	A	G	3: 102,827,950 (GRCm39)	S266P	probably damaging	Het
Tedc1	A	G	12: 113,126,770 (GRCm39)	E344G	probably damaging	Het
Tkfc	T	C	19: 10,571,892 (GRCm39)	I381M	probably benign	Het
Tmprss6	T	C	15: 78,326,634 (GRCm39)	D1G	probably null	Het
Ttn	T	C	2: 76,582,770 (GRCm39)	T22708A	probably damaging	Het
Ubtf	T	C	11: 102,199,710 (GRCm39)		probably benign	Het
Vps35l	T	A	7: 118,372,234 (GRCm39)		probably null	Het
Vwc2l	T	C	1: 70,768,070 (GRCm39)	F45L	probably damaging	Het
Xpo7	T	C	14: 70,939,195 (GRCm39)	T154A	probably benign	Het
Yars2	C	T	16: 16,124,406 (GRCm39)	R338*	probably null	Het

Other mutations in Lypd5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01121:Lypd5	APN	7	24,050,976 (GRCm39)	missense	probably benign
IGL01689:Lypd5	APN	7	24,052,054 (GRCm39)	splice site	probably benign
IGL02584:Lypd5	APN	7	24,052,993 (GRCm39)	missense	possibly damaging	0.59
IGL02888:Lypd5	APN	7	24,052,044 (GRCm39)	missense	probably damaging	0.98
R5167:Lypd5	UTSW	7	24,051,889 (GRCm39)	missense	possibly damaging	0.79
R5982:Lypd5	UTSW	7	24,052,462 (GRCm39)	missense	probably damaging	1.00
R6746:Lypd5	UTSW	7	24,052,531 (GRCm39)	splice site	probably null
R7951:Lypd5	UTSW	7	24,051,060 (GRCm39)	missense	probably damaging	0.96
R8704:Lypd5	UTSW	7	24,050,982 (GRCm39)	missense	possibly damaging	0.62
R8725:Lypd5	UTSW	7	24,053,101 (GRCm39)	missense	probably damaging	1.00
R8727:Lypd5	UTSW	7	24,053,101 (GRCm39)	missense	probably damaging	1.00
R8897:Lypd5	UTSW	7	24,051,015 (GRCm39)	missense	probably benign	0.13
X0057:Lypd5	UTSW	7	24,048,646 (GRCm39)	utr 5 prime	probably benign
Z1177:Lypd5	UTSW	7	24,052,038 (GRCm39)	missense	probably damaging	1.00

Posted On

2013-06-21