Mutagenetix > Incidental Mutation

Incidental Mutation 'R6377:Ncbp1'

515032

Institutional Source

Beutler Lab

Gene Symbol

Ncbp1

Ensembl Gene

ENSMUSG00000028330

Gene Name

nuclear cap binding protein subunit 1

Synonyms

MMRRC Submission

044527-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R6377 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

46138613-46172403 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 46150703 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Cysteine at position 185 (Y185C)

Ref Sequence

ENSEMBL: ENSMUSP00000030014 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000030014] [ENSMUST00000058232]

AlphaFold

Q3UYV9

PDB Structure

Mouse importin alpha: mouse CBP80 cNLS complex [X-RAY DIFFRACTION]
Mouse importin alpha: mouse CBP80Y8D cNLS complex [X-RAY DIFFRACTION]

Predicted Effect

probably damaging
Transcript: ENSMUST00000030014
AA Change: Y185C

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000030014
Gene: ENSMUSG00000028330
AA Change: Y185C

Domain	Start	End	E-Value	Type
MIF4G	28	240	1.33e-38	SMART
Pfam:MIF4G_like	309	471	1.4e-37	PFAM
Pfam:MIF4G_like_2	485	754	4e-78	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000058232

SMART Domains

Protein: ENSMUSP00000050453
Gene: ENSMUSG00000028329

Domain	Start	End	E-Value	Type
low complexity region	32	55	N/A	INTRINSIC
Pfam:XPA_N	101	132	5.2e-18	PFAM
Pfam:XPA_C	134	185	3e-30	PFAM
low complexity region	212	223	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.4%
20x: 97.8%

Validation Efficiency

94% (59/63)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The product of this gene is a component of the nuclear cap-binding protein complex (CBC), which binds to the monomethylated 5' cap of nascent pre-mRNA in the nucleoplasm. The encoded protein promotes high-affinity mRNA-cap binding and associates with the CTD of RNA polymerase II. The CBC promotes pre-mRNA splicing, 3'-end processing, RNA nuclear export, and nonsense-mediated mRNA decay. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 63 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Ankib1	A	G	5: 3,743,855 (GRCm39)	S812P	possibly damaging	Het
Atp2c2	A	G	8: 120,453,093 (GRCm39)	E159G	probably benign	Het
Atrn	A	G	2: 130,821,889 (GRCm39)	I861V	probably damaging	Het
Clip1	A	G	5: 123,741,717 (GRCm39)	V1053A	possibly damaging	Het
Cngb1	C	A	8: 95,975,608 (GRCm39)	G629C	probably damaging	Het
Cntn5	A	T	9: 9,743,657 (GRCm39)	F540Y	probably damaging	Het
Cpb1	A	C	3: 20,329,748 (GRCm39)		probably null	Het
Cyp4a14	A	G	4: 115,353,280 (GRCm39)	Y11H	probably benign	Het
Dact2	A	G	17: 14,419,450 (GRCm39)	S103P	probably damaging	Het
Dcstamp	A	T	15: 39,618,317 (GRCm39)	Y242F	probably benign	Het
Drd3	G	T	16: 43,641,670 (GRCm39)	G329*	probably null	Het
Duxf1	T	C	10: 58,059,494 (GRCm39)		probably benign	Het
Dysf	T	A	6: 83,985,945 (GRCm39)	S17T	probably benign	Het
Eno1	A	T	4: 150,333,009 (GRCm39)	K366N	possibly damaging	Het
Ffar2	C	T	7: 30,518,971 (GRCm39)	V190I	probably benign	Het
Fkbp15	T	C	4: 62,242,429 (GRCm39)	T508A	probably damaging	Het
Fndc1	A	G	17: 7,988,567 (GRCm39)	V1165A	unknown	Het
Foxj3	A	T	4: 119,430,945 (GRCm39)		probably null	Het
Gabarap	T	C	11: 69,882,630 (GRCm39)		probably null	Het
Gm19410	T	A	8: 36,270,736 (GRCm39)	L1221*	probably null	Het
Gpat2	G	C	2: 127,273,838 (GRCm39)	G294R	possibly damaging	Het
Igf1r	A	T	7: 67,850,998 (GRCm39)	Y931F	probably benign	Het
Il23r	A	T	6: 67,400,636 (GRCm39)	S565T	probably damaging	Het
Ipo8	A	T	6: 148,717,995 (GRCm39)	Y209*	probably null	Het
Jph2	C	T	2: 163,181,632 (GRCm39)	G511R	probably benign	Het
Khdrbs1	C	A	4: 129,635,890 (GRCm39)	D22Y	probably damaging	Het
Kif5b	A	T	18: 6,212,562 (GRCm39)	L754Q	probably damaging	Het
Ksr1	C	T	11: 78,927,320 (GRCm39)		probably null	Het
L3mbtl4	G	T	17: 69,084,918 (GRCm39)	V610F	probably benign	Het
Lars2	A	G	9: 123,283,825 (GRCm39)	T698A	probably benign	Het
Lonp1	A	G	17: 56,928,961 (GRCm39)	V267A	possibly damaging	Het
Loxhd1	T	A	18: 77,468,128 (GRCm39)	D925E	probably damaging	Het
Lsg1	A	G	16: 30,393,386 (GRCm39)	L187P	possibly damaging	Het
Mki67	A	T	7: 135,298,050 (GRCm39)	V2328E	possibly damaging	Het
Mlh3	A	G	12: 85,315,271 (GRCm39)	I305T	probably damaging	Het
Mtbp	A	G	15: 55,421,016 (GRCm39)	M1V	probably null	Het
Myadml2	C	A	11: 120,538,538 (GRCm39)	C99F	probably benign	Het
Ndufaf7	A	T	17: 79,250,739 (GRCm39)	Q222L	probably null	Het
Nlrp4b	A	T	7: 10,449,339 (GRCm39)	Y147F	probably benign	Het
Or4c11c	C	T	2: 88,661,613 (GRCm39)	R51*	probably null	Het
Pet100	T	C	8: 3,672,370 (GRCm39)	V15A	probably benign	Het
Pot1a	A	G	6: 25,778,869 (GRCm39)	V75A	probably benign	Het
Ptprs	A	T	17: 56,725,935 (GRCm39)	M1043K	probably damaging	Het
Rnf31	A	G	14: 55,832,984 (GRCm39)	T413A	probably damaging	Het
Rsf1	ATGGCG	ATGGCGACGGTGGCG	7: 97,229,111 (GRCm39)		probably benign	Homo
Rsf1	CG	CGACGGCGGTG	7: 97,229,115 (GRCm39)		probably benign	Het
Rubcnl	A	T	14: 75,287,635 (GRCm39)		probably null	Het
Ryr3	A	T	2: 112,462,530 (GRCm39)	C4839S	probably damaging	Het
Scai	A	C	2: 38,992,340 (GRCm39)	D379E	probably benign	Het
Scd2	G	T	19: 44,288,198 (GRCm39)	G197*	probably null	Het
Sdr39u1	A	C	14: 56,135,166 (GRCm39)	I259S	probably benign	Het
Slco1a5	A	T	6: 142,187,906 (GRCm39)		probably null	Het
Sp1	A	T	15: 102,339,318 (GRCm39)	T733S	probably benign	Het
Tecta	A	G	9: 42,255,051 (GRCm39)	S1711P	probably damaging	Het
Tedc1	G	T	12: 113,124,975 (GRCm39)	W240L	probably damaging	Het
Trarg1	T	C	11: 76,571,355 (GRCm39)	S124P	probably damaging	Het
Trim50	A	G	5: 135,382,454 (GRCm39)	K102R	probably benign	Het
Utrn	A	G	10: 12,619,827 (GRCm39)	Y278H	probably damaging	Het
Vinac1	T	A	2: 128,878,731 (GRCm39)	D1065V	unknown	Het
Vmn2r109	A	C	17: 20,784,796 (GRCm39)		probably null	Het
Zbed5	T	C	5: 129,932,210 (GRCm39)	S720P	possibly damaging	Het
Zc3h3	A	G	15: 75,711,304 (GRCm39)	S386P	probably damaging	Het
Zscan4-ps1	C	T	7: 10,802,418 (GRCm39)		probably null	Het

Other mutations in Ncbp1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00840:Ncbp1	APN	4	46,161,307 (GRCm39)	missense	probably damaging	1.00
IGL02085:Ncbp1	APN	4	46,159,699 (GRCm39)	missense	probably damaging	0.96
IGL02230:Ncbp1	APN	4	46,165,272 (GRCm39)	missense	probably benign	0.03
IGL02561:Ncbp1	APN	4	46,159,711 (GRCm39)	missense	possibly damaging	0.80
IGL02574:Ncbp1	APN	4	46,168,449 (GRCm39)	critical splice acceptor site	probably null
IGL03371:Ncbp1	APN	4	46,171,991 (GRCm39)	nonsense	probably null
R0549:Ncbp1	UTSW	4	46,168,476 (GRCm39)	missense	possibly damaging	0.69
R0594:Ncbp1	UTSW	4	46,170,551 (GRCm39)	missense	probably benign	0.00
R0699:Ncbp1	UTSW	4	46,147,528 (GRCm39)	missense	probably benign	0.17
R0725:Ncbp1	UTSW	4	46,152,056 (GRCm39)	missense	probably benign	0.01
R0961:Ncbp1	UTSW	4	46,165,193 (GRCm39)	missense	possibly damaging	0.69
R1330:Ncbp1	UTSW	4	46,167,354 (GRCm39)	missense	probably benign	0.19
R1622:Ncbp1	UTSW	4	46,171,963 (GRCm39)	missense	possibly damaging	0.60
R1756:Ncbp1	UTSW	4	46,169,131 (GRCm39)	nonsense	probably null
R2417:Ncbp1	UTSW	4	46,168,530 (GRCm39)	missense	probably benign	0.20
R4050:Ncbp1	UTSW	4	46,147,483 (GRCm39)	missense	probably damaging	0.99
R4132:Ncbp1	UTSW	4	46,169,241 (GRCm39)	nonsense	probably null
R4516:Ncbp1	UTSW	4	46,157,824 (GRCm39)	missense	probably damaging	1.00
R4795:Ncbp1	UTSW	4	46,152,967 (GRCm39)	missense	possibly damaging	0.83
R4796:Ncbp1	UTSW	4	46,152,967 (GRCm39)	missense	possibly damaging	0.83
R4960:Ncbp1	UTSW	4	46,165,273 (GRCm39)	nonsense	probably null
R5557:Ncbp1	UTSW	4	46,165,259 (GRCm39)	missense	probably benign	0.01
R5626:Ncbp1	UTSW	4	46,161,290 (GRCm39)	missense	probably damaging	1.00
R5682:Ncbp1	UTSW	4	46,170,474 (GRCm39)	unclassified	probably benign
R5859:Ncbp1	UTSW	4	46,163,026 (GRCm39)	missense	probably benign	0.00
R6440:Ncbp1	UTSW	4	46,147,516 (GRCm39)	missense	probably damaging	1.00
R6793:Ncbp1	UTSW	4	46,157,827 (GRCm39)	missense	probably damaging	0.99
R7078:Ncbp1	UTSW	4	46,155,756 (GRCm39)	missense	probably benign	0.00
R7434:Ncbp1	UTSW	4	46,149,910 (GRCm39)	missense	probably damaging	1.00
R7445:Ncbp1	UTSW	4	46,149,914 (GRCm39)	missense	probably damaging	0.98
R7477:Ncbp1	UTSW	4	46,157,897 (GRCm39)	missense	probably damaging	1.00
R7670:Ncbp1	UTSW	4	46,170,015 (GRCm39)	missense	probably damaging	0.96
R8424:Ncbp1	UTSW	4	46,144,839 (GRCm39)	missense	probably benign
R8970:Ncbp1	UTSW	4	46,170,023 (GRCm39)	missense	probably damaging	0.99
R9712:Ncbp1	UTSW	4	46,144,837 (GRCm39)	missense	probably benign	0.03
X0013:Ncbp1	UTSW	4	46,150,702 (GRCm39)	missense	possibly damaging	0.94

Predicted Primers

PCR Primer
(F):5'- CAGTTATAGAATGCTTGCCTACC -3'
(R):5'- TAGTGAGTTATGGCAGCAGG -3'

Sequencing Primer
(F):5'- GAATGCTTGCCTACCATCTAACCATG -3'
(R):5'- TAGTGAGTTATGGCAGCAGGAGAATG -3'

Posted On

2018-05-04