Incidental Mutation 'R6384:Hmga2'
ID515511
Institutional Source Beutler Lab
Gene Symbol Hmga2
Ensembl Gene ENSMUSG00000056758
Gene Namehigh mobility group AT-hook 2
SynonymsHmgic, HMGI-C, 9430083A20Rik
MMRRC Submission
Accession Numbers
Is this an essential gene? Possibly essential (E-score: 0.502) question?
Stock #R6384 (G1)
Quality Score208.009
Status Not validated
Chromosome10
Chromosomal Location120361275-120476469 bp(-) (GRCm38)
Type of Mutationintron
DNA Base Change (assembly) G to A at 120370707 bp
ZygosityHeterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000072556 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000072777] [ENSMUST00000159699]
Predicted Effect noncoding transcript
Transcript: ENSMUST00000041178
Predicted Effect probably benign
Transcript: ENSMUST00000072777
SMART Domains Protein: ENSMUSP00000072556
Gene: ENSMUSG00000056758

DomainStartEndE-ValueType
AT_hook 26 38 1.26e-1 SMART
AT_hook 46 58 1.86e0 SMART
AT_hook 74 86 1.61e-1 SMART
low complexity region 93 107 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000159621
Predicted Effect unknown
Transcript: ENSMUST00000159699
AA Change: R101C
SMART Domains Protein: ENSMUSP00000123998
Gene: ENSMUSG00000056758
AA Change: R101C

DomainStartEndE-ValueType
AT_hook 26 38 1.26e-1 SMART
AT_hook 46 58 1.86e0 SMART
AT_hook 74 86 1.61e-1 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000160091
Predicted Effect noncoding transcript
Transcript: ENSMUST00000161511
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.4%
  • 20x: 98.2%
Validation Efficiency
MGI Phenotype PHENOTYPE: Homozygotes for null mutations exhibit proportionate dwarfing with a significant reduction in body weight, reduced amounts of fat tissue, and infertility in both sexes. Mutants have normal growth hormone levels. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 47 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Acad10 T A 5: 121,652,003 T97S probably benign Het
Adam34 T A 8: 43,650,799 D603V probably benign Het
Adamts5 C T 16: 85,862,828 V859I probably benign Het
Alb T A 5: 90,472,640 D536E possibly damaging Het
Amz2 A G 11: 109,429,034 Y82C probably damaging Het
Asxl1 T C 2: 153,391,824 probably null Het
Bach1 C T 16: 87,719,857 Q429* probably null Het
Bcl6 A G 16: 23,974,865 Y111H probably damaging Het
Ccnj T C 19: 40,846,007 V338A probably benign Het
Cdca3 C T 6: 124,832,419 P174L probably damaging Het
Cdk17 T C 10: 93,211,965 L25P probably damaging Het
Cdr2 G A 7: 120,982,128 probably null Het
Cyp2c38 A T 19: 39,392,293 probably null Het
Ednra T C 8: 77,689,094 N175D probably damaging Het
Elp3 T C 14: 65,560,211 Y337C probably damaging Het
Eml2 G A 7: 19,201,163 V432I probably damaging Het
Eps15l1 A T 8: 72,368,710 probably null Het
F11r A G 1: 171,460,940 N117S probably benign Het
Foxp2 C T 6: 15,437,948 T716I probably damaging Het
Gnaq A G 19: 16,316,013 probably null Het
Gpat2 G C 2: 127,431,918 G294R possibly damaging Het
Gpr158 T C 2: 21,826,288 M733T probably damaging Het
Hdac7 G A 15: 97,811,506 Q48* probably null Het
Itgb7 A G 15: 102,224,451 V142A probably benign Het
Kif5a T C 10: 127,242,775 N334D probably damaging Het
Lrrc47 T C 4: 154,015,860 S298P probably benign Het
Map3k1 A T 13: 111,750,530 S1415R probably damaging Het
Mdn1 T A 4: 32,670,607 L424Q probably damaging Het
Numb A C 12: 83,803,974 L154R probably damaging Het
Olfr1076 A G 2: 86,509,037 K193E probably benign Het
Olfr944 T C 9: 39,217,978 V207A probably benign Het
Pdcd5 G T 7: 35,646,909 A92E possibly damaging Het
Pdcl2 C T 5: 76,331,008 probably null Het
Rbfa T C 18: 80,192,781 Y251C probably damaging Het
Rgsl1 G A 1: 153,827,545 T120I possibly damaging Het
Serpina3g A G 12: 104,240,396 Q152R probably null Het
Setx T C 2: 29,173,558 S2289P probably damaging Het
Slc6a16 A G 7: 45,257,593 probably null Het
Slco1a6 C T 6: 142,109,379 D280N probably benign Het
Syde2 T A 3: 145,998,813 Y240N probably damaging Het
Synpo2 G A 3: 123,113,049 Q873* probably null Het
Tlr2 A G 3: 83,836,994 V594A probably benign Het
Ttc16 C T 2: 32,767,549 A512T probably damaging Het
Tubb5 T C 17: 35,838,046 E3G probably damaging Het
Vmn2r112 T C 17: 22,605,155 Y464H probably damaging Het
Xcr1 T A 9: 123,855,782 H305L probably damaging Het
Yars T G 4: 129,196,978 probably null Het
Other mutations in Hmga2
AlleleSourceChrCoordTypePredicted EffectPPH Score
R4332:Hmga2 UTSW 10 120364212 utr 3 prime probably benign
R4395:Hmga2 UTSW 10 120476051 missense probably damaging 1.00
R5780:Hmga2 UTSW 10 120462678 nonsense probably null
R6823:Hmga2 UTSW 10 120476024 missense possibly damaging 0.88
Z1176:Hmga2 UTSW 10 120370671 missense unknown
Predicted Primers PCR Primer
(F):5'- GACTTTGCCGATTTGTAATCAGC -3'
(R):5'- CTGGTAAAGAGTGCTTGCAGTC -3'

Sequencing Primer
(F):5'- GCCGATTTGTAATCAGCTAGTTTC -3'
(R):5'- TAAAGAGTGCTTGCAGTCCCCTG -3'
Posted On2018-05-04