Incidental Mutation 'R6388:Clec14a'
| ID |
515646 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Clec14a
|
| Ensembl Gene |
ENSMUSG00000045930 |
| Gene Name |
C-type lectin domain family 14, member a |
| Synonyms |
1200003C23Rik |
| MMRRC Submission |
044537-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.056)
|
| Stock # |
R6388 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Validated
|
| Chromosome |
12 |
| Chromosomal Location |
58311506-58316044 bp(-) (GRCm39) |
| Type of Mutation |
makesense |
| DNA Base Change (assembly) |
A to G
at 58314243 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Stop codon to Arginine
at position 460
(*460R)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000054451
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000062254]
|
| AlphaFold |
Q8VCP9 |
| Predicted Effect |
probably null
Transcript: ENSMUST00000062254
AA Change: *460R
|
| SMART Domains |
Protein: ENSMUSP00000054451
Gene: ENSMUSG00000045930
AA Change: *460R
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
21 |
N/A |
INTRINSIC |
|
CLECT
|
31 |
172 |
1.4e-5 |
SMART |
|
EGF
|
246 |
288 |
1.85e0 |
SMART |
|
transmembrane domain
|
388 |
410 |
N/A |
INTRINSIC |
|
| Coding Region Coverage |
- 1x: 100.0%
- 3x: 99.9%
- 10x: 99.1%
- 20x: 96.8%
|
| Validation Efficiency |
100% (35/35) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the C-type lectin/C-type lectin-like domain (CTL/CTLD) superfamily. Members of this family share a common protein fold and have diverse functions, such as cell adhesion, cell-cell signalling, glycoprotein turnover, and roles in inflammation and immune response. This family member plays a role in cell-cell adhesion and angiogenesis. It functions in filopodia formation, cell migration and tube formation. Due to its presence at higher levels in tumor endothelium than in normal tissue endothelium, it is considered to be a candidate for tumor vascular targeting. [provided by RefSeq, Jan 2012]
PHENOTYPE: No notable pheontype was detected in a high-throughput screen of homozygous mutant mice. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 36 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 2210408I21Rik |
C |
T |
13: 77,410,230 (GRCm39) |
R560W |
probably benign |
Het |
| Abi3 |
A |
G |
11: 95,724,464 (GRCm39) |
|
probably null |
Het |
| Ap1b1 |
T |
C |
11: 4,976,319 (GRCm39) |
I449T |
probably damaging |
Het |
| Atpaf2 |
C |
A |
11: 60,307,833 (GRCm39) |
|
probably benign |
Het |
| Car5a |
T |
C |
8: 122,653,910 (GRCm39) |
Y118C |
probably damaging |
Het |
| Ccdc18 |
A |
G |
5: 108,349,214 (GRCm39) |
D1002G |
possibly damaging |
Het |
| Ciao1 |
A |
T |
2: 127,088,396 (GRCm39) |
C142* |
probably null |
Het |
| Defb30 |
T |
A |
14: 63,287,213 (GRCm39) |
|
probably benign |
Het |
| Dnah10 |
A |
G |
5: 124,906,710 (GRCm39) |
K4247R |
probably benign |
Het |
| Eif5b |
G |
A |
1: 38,058,081 (GRCm39) |
A128T |
unknown |
Het |
| Fam3b |
T |
C |
16: 97,279,591 (GRCm39) |
T113A |
probably benign |
Het |
| Fam98c |
C |
T |
7: 28,854,728 (GRCm39) |
R126Q |
probably damaging |
Het |
| Fastkd3 |
C |
T |
13: 68,738,319 (GRCm39) |
L623F |
probably damaging |
Het |
| Golga1 |
T |
C |
2: 38,913,183 (GRCm39) |
D543G |
probably benign |
Het |
| Gpatch8 |
A |
T |
11: 102,369,314 (GRCm39) |
V1408E |
probably damaging |
Het |
| Icosl |
T |
A |
10: 77,905,366 (GRCm39) |
L3Q |
possibly damaging |
Homo |
| Igf2r |
A |
G |
17: 12,902,787 (GRCm39) |
V2421A |
probably benign |
Het |
| Iglon5 |
T |
C |
7: 43,127,556 (GRCm39) |
T165A |
possibly damaging |
Het |
| Map3k11 |
A |
G |
19: 5,740,279 (GRCm39) |
E2G |
probably damaging |
Het |
| Nipbl |
A |
T |
15: 8,330,268 (GRCm39) |
C2386S |
probably damaging |
Het |
| Nos1 |
A |
G |
5: 118,052,501 (GRCm39) |
E837G |
possibly damaging |
Het |
| Npc1l1 |
T |
C |
11: 6,174,145 (GRCm39) |
E720G |
probably damaging |
Het |
| Or1e35 |
A |
G |
11: 73,798,118 (GRCm39) |
S67P |
probably damaging |
Het |
| Pla1a |
T |
A |
16: 38,217,834 (GRCm39) |
M385L |
probably benign |
Het |
| Saxo4 |
A |
G |
19: 10,459,665 (GRCm39) |
V14A |
probably damaging |
Het |
| Setdb2 |
T |
C |
14: 59,662,146 (GRCm39) |
T82A |
probably benign |
Het |
| Smarcd3 |
A |
G |
5: 24,801,024 (GRCm39) |
F128L |
possibly damaging |
Het |
| St3gal1 |
A |
G |
15: 66,983,195 (GRCm39) |
V187A |
possibly damaging |
Het |
| Syvn1 |
T |
A |
19: 6,102,381 (GRCm39) |
V483E |
probably damaging |
Het |
| Timm22 |
G |
A |
11: 76,297,945 (GRCm39) |
V19I |
probably benign |
Het |
| Ttn |
C |
A |
2: 76,621,189 (GRCm39) |
D15716Y |
probably damaging |
Het |
| Ube3a |
C |
T |
7: 58,954,669 (GRCm39) |
|
probably null |
Het |
| Ugp2 |
A |
G |
11: 21,272,051 (GRCm39) |
|
probably null |
Het |
| Vmn1r13 |
T |
A |
6: 57,186,903 (GRCm39) |
F21I |
probably benign |
Het |
| Vps13d |
T |
C |
4: 144,882,144 (GRCm39) |
S1150G |
probably benign |
Het |
| Zp3 |
T |
C |
5: 136,011,548 (GRCm39) |
V122A |
probably benign |
Het |
|
| Other mutations in Clec14a |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01933:Clec14a
|
APN |
12 |
58,315,104 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02109:Clec14a
|
APN |
12 |
58,314,934 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL02121:Clec14a
|
APN |
12 |
58,315,223 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02136:Clec14a
|
APN |
12 |
58,315,415 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02818:Clec14a
|
APN |
12 |
58,314,888 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0379:Clec14a
|
UTSW |
12 |
58,315,580 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
R0382:Clec14a
|
UTSW |
12 |
58,315,403 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0419:Clec14a
|
UTSW |
12 |
58,314,451 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R2972:Clec14a
|
UTSW |
12 |
58,314,360 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3796:Clec14a
|
UTSW |
12 |
58,314,695 (GRCm39) |
missense |
probably benign |
0.34 |
|
R3797:Clec14a
|
UTSW |
12 |
58,314,695 (GRCm39) |
missense |
probably benign |
0.34 |
|
R3876:Clec14a
|
UTSW |
12 |
58,315,430 (GRCm39) |
missense |
possibly damaging |
0.79 |
|
R4602:Clec14a
|
UTSW |
12 |
58,314,767 (GRCm39) |
missense |
probably benign |
0.03 |
|
R4708:Clec14a
|
UTSW |
12 |
58,314,489 (GRCm39) |
missense |
probably benign |
0.00 |
|
R4994:Clec14a
|
UTSW |
12 |
58,315,070 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5193:Clec14a
|
UTSW |
12 |
58,315,400 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5489:Clec14a
|
UTSW |
12 |
58,315,035 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5671:Clec14a
|
UTSW |
12 |
58,314,612 (GRCm39) |
missense |
probably benign |
0.05 |
|
R6318:Clec14a
|
UTSW |
12 |
58,315,001 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6828:Clec14a
|
UTSW |
12 |
58,315,290 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7065:Clec14a
|
UTSW |
12 |
58,315,580 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
R7418:Clec14a
|
UTSW |
12 |
58,315,433 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R7635:Clec14a
|
UTSW |
12 |
58,315,314 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7666:Clec14a
|
UTSW |
12 |
58,314,543 (GRCm39) |
missense |
probably benign |
0.05 |
|
R7908:Clec14a
|
UTSW |
12 |
58,314,465 (GRCm39) |
missense |
possibly damaging |
0.63 |
|
R8844:Clec14a
|
UTSW |
12 |
58,315,599 (GRCm39) |
missense |
possibly damaging |
0.59 |
|
R9294:Clec14a
|
UTSW |
12 |
58,315,536 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9477:Clec14a
|
UTSW |
12 |
58,314,620 (GRCm39) |
missense |
probably benign |
0.01 |
|
R9711:Clec14a
|
UTSW |
12 |
58,314,432 (GRCm39) |
missense |
probably damaging |
0.97 |
|
X0024:Clec14a
|
UTSW |
12 |
58,315,112 (GRCm39) |
missense |
probably damaging |
1.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- CCTTTCAGGGAACAAGTGTCTC -3'
(R):5'- CCACGGTGGTCTTCATACTTG -3'
Sequencing Primer
(F):5'- CAGGGAACAAGTGTCTCTTTCAG -3'
(R):5'- GTCTTCATACTTGTGAGCATAGCAG -3'
|
| Posted On |
2018-05-04 |
Incidental Mutation