Incidental Mutation 'R6388:Fam3b'
| ID |
515654 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Fam3b
|
| Ensembl Gene |
ENSMUSG00000022938 |
| Gene Name |
FAM3 metabolism regulating signaling molecule B |
| Synonyms |
9030624C24Rik, ORF9, D16Jhu19e, Pander |
| MMRRC Submission |
044537-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.054)
|
| Stock # |
R6388 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Validated
|
| Chromosome |
16 |
| Chromosomal Location |
97272165-97306136 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to C
at 97279591 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Threonine to Alanine
at position 113
(T113A)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000155878
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000049721]
[ENSMUST00000231414]
[ENSMUST00000231641]
[ENSMUST00000231999]
[ENSMUST00000232018]
|
| AlphaFold |
Q9D309 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000049721
AA Change: T102A
PolyPhen 2
Score 0.145 (Sensitivity: 0.92; Specificity: 0.87)
|
| SMART Domains |
Protein: ENSMUSP00000062006
Gene: ENSMUSG00000022938
AA Change: T102A
| Domain | Start | End | E-Value | Type |
|---|
|
transmembrane domain
|
7 |
29 |
N/A |
INTRINSIC |
|
Pfam:ILEI
|
107 |
200 |
3.6e-31 |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000125475
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000231414
AA Change: T113A
PolyPhen 2
Score 0.226 (Sensitivity: 0.91; Specificity: 0.88)
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000231641
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000231999
AA Change: T54A
PolyPhen 2
Score 0.136 (Sensitivity: 0.92; Specificity: 0.86)
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000232018
|
| Coding Region Coverage |
- 1x: 100.0%
- 3x: 99.9%
- 10x: 99.1%
- 20x: 96.8%
|
| Validation Efficiency |
100% (35/35) |
| MGI Phenotype |
PHENOTYPE: Mice homozygous for a deletion of this gene display elevated blood glucose in glucose tolerance tests and elevated blood insulin after glucose injection, probably due to impaired insulin clearance. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 36 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 2210408I21Rik |
C |
T |
13: 77,410,230 (GRCm39) |
R560W |
probably benign |
Het |
| Abi3 |
A |
G |
11: 95,724,464 (GRCm39) |
|
probably null |
Het |
| Ap1b1 |
T |
C |
11: 4,976,319 (GRCm39) |
I449T |
probably damaging |
Het |
| Atpaf2 |
C |
A |
11: 60,307,833 (GRCm39) |
|
probably benign |
Het |
| Car5a |
T |
C |
8: 122,653,910 (GRCm39) |
Y118C |
probably damaging |
Het |
| Ccdc18 |
A |
G |
5: 108,349,214 (GRCm39) |
D1002G |
possibly damaging |
Het |
| Ciao1 |
A |
T |
2: 127,088,396 (GRCm39) |
C142* |
probably null |
Het |
| Clec14a |
A |
G |
12: 58,314,243 (GRCm39) |
*460R |
probably null |
Het |
| Defb30 |
T |
A |
14: 63,287,213 (GRCm39) |
|
probably benign |
Het |
| Dnah10 |
A |
G |
5: 124,906,710 (GRCm39) |
K4247R |
probably benign |
Het |
| Eif5b |
G |
A |
1: 38,058,081 (GRCm39) |
A128T |
unknown |
Het |
| Fam98c |
C |
T |
7: 28,854,728 (GRCm39) |
R126Q |
probably damaging |
Het |
| Fastkd3 |
C |
T |
13: 68,738,319 (GRCm39) |
L623F |
probably damaging |
Het |
| Golga1 |
T |
C |
2: 38,913,183 (GRCm39) |
D543G |
probably benign |
Het |
| Gpatch8 |
A |
T |
11: 102,369,314 (GRCm39) |
V1408E |
probably damaging |
Het |
| Icosl |
T |
A |
10: 77,905,366 (GRCm39) |
L3Q |
possibly damaging |
Homo |
| Igf2r |
A |
G |
17: 12,902,787 (GRCm39) |
V2421A |
probably benign |
Het |
| Iglon5 |
T |
C |
7: 43,127,556 (GRCm39) |
T165A |
possibly damaging |
Het |
| Map3k11 |
A |
G |
19: 5,740,279 (GRCm39) |
E2G |
probably damaging |
Het |
| Nipbl |
A |
T |
15: 8,330,268 (GRCm39) |
C2386S |
probably damaging |
Het |
| Nos1 |
A |
G |
5: 118,052,501 (GRCm39) |
E837G |
possibly damaging |
Het |
| Npc1l1 |
T |
C |
11: 6,174,145 (GRCm39) |
E720G |
probably damaging |
Het |
| Or1e35 |
A |
G |
11: 73,798,118 (GRCm39) |
S67P |
probably damaging |
Het |
| Pla1a |
T |
A |
16: 38,217,834 (GRCm39) |
M385L |
probably benign |
Het |
| Saxo4 |
A |
G |
19: 10,459,665 (GRCm39) |
V14A |
probably damaging |
Het |
| Setdb2 |
T |
C |
14: 59,662,146 (GRCm39) |
T82A |
probably benign |
Het |
| Smarcd3 |
A |
G |
5: 24,801,024 (GRCm39) |
F128L |
possibly damaging |
Het |
| St3gal1 |
A |
G |
15: 66,983,195 (GRCm39) |
V187A |
possibly damaging |
Het |
| Syvn1 |
T |
A |
19: 6,102,381 (GRCm39) |
V483E |
probably damaging |
Het |
| Timm22 |
G |
A |
11: 76,297,945 (GRCm39) |
V19I |
probably benign |
Het |
| Ttn |
C |
A |
2: 76,621,189 (GRCm39) |
D15716Y |
probably damaging |
Het |
| Ube3a |
C |
T |
7: 58,954,669 (GRCm39) |
|
probably null |
Het |
| Ugp2 |
A |
G |
11: 21,272,051 (GRCm39) |
|
probably null |
Het |
| Vmn1r13 |
T |
A |
6: 57,186,903 (GRCm39) |
F21I |
probably benign |
Het |
| Vps13d |
T |
C |
4: 144,882,144 (GRCm39) |
S1150G |
probably benign |
Het |
| Zp3 |
T |
C |
5: 136,011,548 (GRCm39) |
V122A |
probably benign |
Het |
|
| Other mutations in Fam3b |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00648:Fam3b
|
APN |
16 |
97,279,599 (GRCm39) |
missense |
probably damaging |
0.99 |
|
IGL01754:Fam3b
|
APN |
16 |
97,277,607 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL02582:Fam3b
|
APN |
16 |
97,272,391 (GRCm39) |
nonsense |
probably null |
|
|
R4393:Fam3b
|
UTSW |
16 |
97,282,986 (GRCm39) |
critical splice donor site |
probably null |
|
|
R4394:Fam3b
|
UTSW |
16 |
97,282,986 (GRCm39) |
critical splice donor site |
probably null |
|
|
R4395:Fam3b
|
UTSW |
16 |
97,282,986 (GRCm39) |
critical splice donor site |
probably null |
|
|
R6115:Fam3b
|
UTSW |
16 |
97,276,568 (GRCm39) |
missense |
possibly damaging |
0.47 |
|
R6500:Fam3b
|
UTSW |
16 |
97,302,101 (GRCm39) |
missense |
possibly damaging |
0.78 |
|
R8031:Fam3b
|
UTSW |
16 |
97,283,052 (GRCm39) |
nonsense |
probably null |
|
|
R8411:Fam3b
|
UTSW |
16 |
97,283,053 (GRCm39) |
missense |
probably benign |
0.29 |
|
R8811:Fam3b
|
UTSW |
16 |
97,313,715 (GRCm39) |
intron |
probably benign |
|
|
R8992:Fam3b
|
UTSW |
16 |
97,277,594 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R9128:Fam3b
|
UTSW |
16 |
97,302,200 (GRCm39) |
missense |
probably benign |
|
|
R9220:Fam3b
|
UTSW |
16 |
97,302,111 (GRCm39) |
missense |
probably benign |
0.02 |
|
Z1176:Fam3b
|
UTSW |
16 |
97,283,044 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Z1177:Fam3b
|
UTSW |
16 |
97,313,687 (GRCm39) |
missense |
probably benign |
0.03 |
|
| Predicted Primers |
PCR Primer
(F):5'- ATGTGTCCACACCATATGAATATGC -3'
(R):5'- AGTCCCAGCTACTGCATACC -3'
Sequencing Primer
(F):5'- TGGAACTCACTCTGTAGTCCAGG -3'
(R):5'- CTGCATACCAGTGGAGGAGC -3'
|
| Posted On |
2018-05-04 |
Incidental Mutation