Incidental Mutation 'R6389:Clu'
ID |
515711 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Clu
|
Ensembl Gene |
ENSMUSG00000022037 |
Gene Name |
clusterin |
Synonyms |
D14Ucla3, Sgp2, Sgp-2, Cli, ApoJ, testosterone repressed prostate message-2, SP-40, complement lysis inhibitor, Apolipoprotein J, Sugp-2 |
MMRRC Submission |
044538-MU
|
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.195)
|
Stock # |
R6389 (G1)
|
Quality Score |
225.009 |
Status
|
Validated
|
Chromosome |
14 |
Chromosomal Location |
66205932-66218996 bp(+) (GRCm39) |
Type of Mutation |
intron |
DNA Base Change (assembly) |
G to C
at 66208771 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
|
Ref Sequence |
ENSEMBL: ENSMUSP00000121633
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000022616]
[ENSMUST00000127387]
[ENSMUST00000128539]
[ENSMUST00000138191]
[ENSMUST00000138665]
[ENSMUST00000144619]
[ENSMUST00000153460]
|
AlphaFold |
Q06890 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000022616
|
SMART Domains |
Protein: ENSMUSP00000022616 Gene: ENSMUSG00000022037
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
21 |
N/A |
INTRINSIC |
CLb
|
22 |
226 |
9.93e-152 |
SMART |
CLa
|
227 |
442 |
2.3e-156 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000127387
|
SMART Domains |
Protein: ENSMUSP00000114720 Gene: ENSMUSG00000022037
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
21 |
N/A |
INTRINSIC |
CLb
|
22 |
226 |
9.93e-152 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000128539
|
SMART Domains |
Protein: ENSMUSP00000121485 Gene: ENSMUSG00000022037
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
21 |
N/A |
INTRINSIC |
CLb
|
22 |
203 |
3.48e-124 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000138191
|
SMART Domains |
Protein: ENSMUSP00000117555 Gene: ENSMUSG00000022037
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
21 |
N/A |
INTRINSIC |
CLb
|
22 |
225 |
2.18e-148 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000138665
|
Predicted Effect |
unknown
Transcript: ENSMUST00000144619
AA Change: R5S
|
SMART Domains |
Protein: ENSMUSP00000117953 Gene: ENSMUSG00000022037 AA Change: R5S
Domain | Start | End | E-Value | Type |
low complexity region
|
92 |
100 |
N/A |
INTRINSIC |
CLb
|
110 |
209 |
1.16e-20 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000153460
|
SMART Domains |
Protein: ENSMUSP00000121633 Gene: ENSMUSG00000022037
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
21 |
N/A |
INTRINSIC |
CLb
|
22 |
226 |
9.93e-152 |
SMART |
Blast:CLa
|
227 |
265 |
2e-19 |
BLAST |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000146990
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000152903
|
Meta Mutation Damage Score |
0.0898 |
Coding Region Coverage |
- 1x: 100.0%
- 3x: 99.9%
- 10x: 99.2%
- 20x: 96.9%
|
Validation Efficiency |
100% (57/57) |
MGI Phenotype |
FUNCTION: The protein encoded by this gene is a secreted chaperone that can, under some stress conditions, also be found in the cell cytosol. It has been suggested to be involved in several basic biological events such as cell death, tumor progression, and neurodegenerative disorders. The encoded preproprotein undergoes proteolytic processing to generate a disulfide-linked heterodimeric mature protein comprised of alpha and beta subunits. Mice lacking the encoded protein exhibit increased severity of autoimmune myocarditis, faster progression of the acute inflammation to myocardial scarring and decreased brain injury following neonatal hypoxic-ischemic injury. [provided by RefSeq, Nov 2015] PHENOTYPE: Homozygous inactivation of this gene leads to progressive renal glomerulopathy and increased severity of myosin-induced autoimmune myocarditis. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 57 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
4931406B18Rik |
A |
C |
7: 43,147,254 (GRCm39) |
L326R |
possibly damaging |
Het |
Abcb11 |
A |
T |
2: 69,154,238 (GRCm39) |
N109K |
probably damaging |
Het |
Actn1 |
T |
A |
12: 80,221,296 (GRCm39) |
M586L |
probably benign |
Het |
Ago4 |
T |
A |
4: 126,401,037 (GRCm39) |
I603F |
probably damaging |
Het |
Bicc1 |
A |
T |
10: 70,794,752 (GRCm39) |
V135D |
probably damaging |
Het |
Bms1 |
T |
C |
6: 118,380,196 (GRCm39) |
N704D |
possibly damaging |
Het |
Cadm4 |
A |
C |
7: 24,198,959 (GRCm39) |
Q78P |
probably benign |
Het |
Cfap74 |
T |
C |
4: 155,507,793 (GRCm39) |
I248T |
possibly damaging |
Het |
Cnnm3 |
T |
C |
1: 36,559,603 (GRCm39) |
V514A |
probably damaging |
Het |
Cntd1 |
A |
T |
11: 101,176,577 (GRCm39) |
I225F |
probably damaging |
Het |
Col20a1 |
T |
C |
2: 180,634,376 (GRCm39) |
|
probably null |
Het |
Ctnnal1 |
A |
G |
4: 56,813,849 (GRCm39) |
V640A |
probably benign |
Het |
Cul4a |
A |
G |
8: 13,190,278 (GRCm39) |
T572A |
probably benign |
Het |
D16Ertd472e |
A |
G |
16: 78,342,071 (GRCm39) |
S270P |
probably damaging |
Het |
Dmp1 |
A |
T |
5: 104,360,788 (GRCm39) |
N488I |
probably damaging |
Het |
Dnah14 |
G |
A |
1: 181,478,767 (GRCm39) |
|
probably null |
Het |
Dst |
T |
C |
1: 34,232,265 (GRCm39) |
L3464P |
probably damaging |
Het |
Fnbp4 |
C |
T |
2: 90,575,879 (GRCm39) |
P27S |
unknown |
Het |
Fpr-rs3 |
A |
T |
17: 20,844,230 (GRCm39) |
F304I |
probably damaging |
Het |
Gm13941 |
T |
C |
2: 110,928,734 (GRCm39) |
Q108R |
unknown |
Het |
Hcn3 |
C |
T |
3: 89,058,240 (GRCm39) |
A339T |
possibly damaging |
Het |
Inpp5f |
A |
G |
7: 128,279,780 (GRCm39) |
D460G |
probably damaging |
Het |
Ism2 |
T |
C |
12: 87,329,145 (GRCm39) |
E253G |
possibly damaging |
Het |
Klrg1 |
T |
C |
6: 122,248,431 (GRCm39) |
N156S |
probably damaging |
Het |
Ksr2 |
A |
G |
5: 117,552,907 (GRCm39) |
N5S |
probably benign |
Het |
Lrrc7 |
T |
G |
3: 157,891,063 (GRCm39) |
E368A |
probably damaging |
Het |
Ly9 |
G |
C |
1: 171,424,105 (GRCm39) |
S482C |
probably damaging |
Het |
Map3k1 |
T |
C |
13: 111,905,975 (GRCm39) |
D289G |
probably damaging |
Het |
Mcub |
T |
C |
3: 129,712,357 (GRCm39) |
T173A |
probably benign |
Het |
Mup16 |
T |
C |
4: 61,437,177 (GRCm39) |
E48G |
probably damaging |
Het |
Naf1 |
C |
T |
8: 67,313,680 (GRCm39) |
S24L |
possibly damaging |
Het |
Ncoa6 |
A |
G |
2: 155,237,736 (GRCm39) |
S2024P |
probably damaging |
Het |
Nop56 |
C |
A |
2: 130,119,807 (GRCm39) |
Q83K |
probably damaging |
Het |
Nt5e |
T |
C |
9: 88,245,524 (GRCm39) |
Y265H |
probably damaging |
Het |
Odad1 |
G |
T |
7: 45,597,940 (GRCm39) |
V617F |
probably benign |
Het |
Or4a27 |
A |
G |
2: 88,559,016 (GRCm39) |
V309A |
probably benign |
Het |
Or52p2 |
A |
T |
7: 102,237,679 (GRCm39) |
N90K |
probably benign |
Het |
Or5w8 |
C |
T |
2: 87,688,367 (GRCm39) |
P283S |
probably damaging |
Het |
Oxct2a |
T |
A |
4: 123,217,220 (GRCm39) |
K54* |
probably null |
Het |
Oxct2b |
G |
T |
4: 123,010,367 (GRCm39) |
D96Y |
probably benign |
Het |
Pisd |
A |
G |
5: 32,922,191 (GRCm39) |
Y250H |
probably damaging |
Het |
Plekhm1 |
G |
T |
11: 103,257,720 (GRCm39) |
N1071K |
probably benign |
Het |
Prr11 |
G |
A |
11: 86,989,564 (GRCm39) |
T269I |
possibly damaging |
Het |
Ptpn4 |
T |
A |
1: 119,649,684 (GRCm39) |
H304L |
probably damaging |
Het |
Rrp1b |
A |
G |
17: 32,275,601 (GRCm39) |
K383E |
possibly damaging |
Het |
Sel1l2 |
C |
A |
2: 140,087,274 (GRCm39) |
A466S |
probably damaging |
Het |
Slc9a4 |
A |
G |
1: 40,619,844 (GRCm39) |
I57V |
probably benign |
Het |
Spag9 |
A |
G |
11: 93,977,137 (GRCm39) |
E81G |
probably damaging |
Het |
Tbr1 |
A |
G |
2: 61,636,631 (GRCm39) |
|
probably benign |
Het |
Tnrc6c |
A |
G |
11: 117,613,567 (GRCm39) |
D735G |
probably damaging |
Het |
Tspan17 |
A |
T |
13: 54,943,429 (GRCm39) |
|
probably null |
Het |
Tyw5 |
T |
C |
1: 57,430,658 (GRCm39) |
K175R |
probably damaging |
Het |
Ube2o |
A |
C |
11: 116,439,684 (GRCm39) |
I162R |
probably null |
Het |
Ubr1 |
G |
T |
2: 120,711,520 (GRCm39) |
T1458K |
probably benign |
Het |
Vmn2r16 |
A |
T |
5: 109,478,344 (GRCm39) |
Q33L |
probably benign |
Het |
Zfp1007 |
G |
A |
5: 109,823,885 (GRCm39) |
P522S |
possibly damaging |
Het |
Zfp799 |
A |
G |
17: 33,039,552 (GRCm39) |
L238P |
probably damaging |
Het |
|
Other mutations in Clu |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01339:Clu
|
APN |
14 |
66,213,037 (GRCm39) |
missense |
probably damaging |
0.98 |
IGL01657:Clu
|
APN |
14 |
66,217,121 (GRCm39) |
missense |
possibly damaging |
0.81 |
IGL02030:Clu
|
APN |
14 |
66,213,240 (GRCm39) |
missense |
probably benign |
0.08 |
IGL02891:Clu
|
APN |
14 |
66,213,433 (GRCm39) |
missense |
probably damaging |
0.96 |
IGL03163:Clu
|
APN |
14 |
66,217,235 (GRCm39) |
missense |
probably benign |
0.06 |
R1378:Clu
|
UTSW |
14 |
66,212,350 (GRCm39) |
missense |
probably damaging |
1.00 |
R1417:Clu
|
UTSW |
14 |
66,212,420 (GRCm39) |
nonsense |
probably null |
|
R1711:Clu
|
UTSW |
14 |
66,218,354 (GRCm39) |
missense |
possibly damaging |
0.63 |
R2134:Clu
|
UTSW |
14 |
66,212,290 (GRCm39) |
critical splice acceptor site |
probably null |
|
R2285:Clu
|
UTSW |
14 |
66,218,408 (GRCm39) |
missense |
probably benign |
0.03 |
R2340:Clu
|
UTSW |
14 |
66,218,358 (GRCm39) |
missense |
probably damaging |
0.99 |
R2508:Clu
|
UTSW |
14 |
66,212,452 (GRCm39) |
missense |
probably damaging |
1.00 |
R4700:Clu
|
UTSW |
14 |
66,217,313 (GRCm39) |
missense |
probably benign |
0.25 |
R4981:Clu
|
UTSW |
14 |
66,210,815 (GRCm39) |
missense |
probably damaging |
0.97 |
R5062:Clu
|
UTSW |
14 |
66,217,177 (GRCm39) |
missense |
probably damaging |
0.99 |
R5422:Clu
|
UTSW |
14 |
66,213,051 (GRCm39) |
missense |
probably damaging |
0.99 |
R7009:Clu
|
UTSW |
14 |
66,209,281 (GRCm39) |
missense |
probably damaging |
1.00 |
R8306:Clu
|
UTSW |
14 |
66,217,211 (GRCm39) |
missense |
probably damaging |
1.00 |
R8681:Clu
|
UTSW |
14 |
66,218,406 (GRCm39) |
missense |
probably damaging |
1.00 |
R9082:Clu
|
UTSW |
14 |
66,217,153 (GRCm39) |
missense |
probably damaging |
1.00 |
R9614:Clu
|
UTSW |
14 |
66,208,851 (GRCm39) |
missense |
unknown |
|
R9686:Clu
|
UTSW |
14 |
66,212,454 (GRCm39) |
missense |
probably damaging |
1.00 |
X0025:Clu
|
UTSW |
14 |
66,209,263 (GRCm39) |
missense |
probably damaging |
1.00 |
Z1088:Clu
|
UTSW |
14 |
66,214,362 (GRCm39) |
missense |
probably benign |
0.00 |
Z1177:Clu
|
UTSW |
14 |
66,213,370 (GRCm39) |
missense |
probably damaging |
0.99 |
|
Predicted Primers |
PCR Primer
(F):5'- AATCCATACTCAGCCTGGTGG -3'
(R):5'- ACCCCTTCTATAGACACTGGAG -3'
Sequencing Primer
(F):5'- CTGGTGGCACAAGCGTTG -3'
(R):5'- TGGGAAGAACCATGGCCC -3'
|
Posted On |
2018-05-04 |