Incidental Mutation 'R6405:Ncbp2'
ID 516271
Institutional Source Beutler Lab
Gene Symbol Ncbp2
Ensembl Gene ENSMUSG00000022774
Gene Name nuclear cap binding protein subunit 2
Synonyms 20kDa
MMRRC Submission 044550-MU
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # R6405 (G1)
Quality Score 217.468
Status Not validated
Chromosome 16
Chromosomal Location 31767364-31777290 bp(+) (GRCm39)
Type of Mutation frame shift
DNA Base Change (assembly) CGTCTGGATG to CG at 31775161 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000156386 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000023460] [ENSMUST00000115178] [ENSMUST00000126215] [ENSMUST00000231360]
AlphaFold Q9CQ49
Predicted Effect probably null
Transcript: ENSMUST00000023460
SMART Domains Protein: ENSMUSP00000023460
Gene: ENSMUSG00000022774

DomainStartEndE-ValueType
RRM 41 114 6.96e-23 SMART
low complexity region 122 135 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000115178
SMART Domains Protein: ENSMUSP00000110832
Gene: ENSMUSG00000022774

DomainStartEndE-ValueType
PDB:3FEY|B 1 103 7e-42 PDB
Blast:RRM 41 61 2e-6 BLAST
SCOP:d1qm9a1 41 97 4e-4 SMART
Predicted Effect probably null
Transcript: ENSMUST00000126215
Predicted Effect noncoding transcript
Transcript: ENSMUST00000140965
Predicted Effect probably benign
Transcript: ENSMUST00000231360
Meta Mutation Damage Score 0.9755 question?
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.4%
  • 20x: 98.2%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The product of this gene is a component of the nuclear cap-binding protein complex (CBC), which binds to the monomethylated 5' cap of nascent pre-mRNA in the nucleoplasm. The encoded protein has an RNP domain commonly found in RNA binding proteins, and contains the cap-binding activity. The CBC promotes pre-mRNA splicing, 3'-end processing, RNA nuclear export, and nonsense-mediated mRNA decay. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]
Allele List at MGI
Other mutations in this stock
Total: 40 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4930562C15Rik T C 16: 4,669,742 (GRCm39) V769A probably damaging Het
Abca4 A G 3: 121,967,311 (GRCm39) probably null Het
Ahnak2 A T 12: 112,739,771 (GRCm39) S628T probably damaging Het
Ano8 T C 8: 71,935,674 (GRCm39) T315A probably damaging Het
Arhgap32 T A 9: 32,159,784 (GRCm39) V267E probably benign Het
Asnsd1 A T 1: 53,387,154 (GRCm39) S158T probably damaging Het
Asxl2 T A 12: 3,543,758 (GRCm39) V309E probably damaging Het
Bhlhe40 TG TGG 6: 108,641,818 (GRCm39) 254 probably null Het
Ccdc110 T A 8: 46,394,734 (GRCm39) Y208* probably null Het
Cfap157 G T 2: 32,671,408 (GRCm39) Q133K probably damaging Het
Cfap53 A G 18: 74,492,677 (GRCm39) E467G probably damaging Het
Csmd3 T C 15: 47,683,767 (GRCm39) I1688M probably damaging Het
Cyp3a11 A T 5: 145,799,230 (GRCm39) L319Q probably damaging Het
Dchs2 A G 3: 83,261,570 (GRCm39) I2613V probably benign Het
Dhx35 T A 2: 158,636,839 (GRCm39) W11R probably damaging Het
Dscam C T 16: 96,479,625 (GRCm39) G1174D probably damaging Het
Fan1 T A 7: 64,022,234 (GRCm39) N340Y probably damaging Het
Fsip2 A G 2: 82,820,430 (GRCm39) T5388A possibly damaging Het
Gm10549 C A 18: 33,597,358 (GRCm39) probably benign Het
Greb1l T A 18: 10,501,076 (GRCm39) I402K probably benign Het
Hectd3 A T 4: 116,857,821 (GRCm39) M585L probably benign Het
Inpp5k T C 11: 75,524,004 (GRCm39) probably null Het
Lalba T G 15: 98,378,632 (GRCm39) probably null Het
Lgals9 C A 11: 78,862,211 (GRCm39) V125L probably benign Het
Or2g25 A G 17: 37,971,014 (GRCm39) I70T possibly damaging Het
Peg10 C CTCG 6: 4,756,453 (GRCm39) probably benign Het
Rab4b T A 7: 26,872,379 (GRCm39) D94V probably damaging Het
Rhpn2 A G 7: 35,071,864 (GRCm39) E243G probably benign Het
Rp1 T C 1: 4,415,994 (GRCm39) D1706G probably damaging Het
Slc29a3 A T 10: 60,551,805 (GRCm39) I413N probably damaging Het
Slc7a9 T C 7: 35,154,064 (GRCm39) L229P probably damaging Het
Tenm2 T C 11: 36,755,686 (GRCm39) H104R probably benign Het
Tmem87a A G 2: 120,210,231 (GRCm39) Y241H probably damaging Het
Trpv5 G T 6: 41,651,602 (GRCm39) T192K probably damaging Het
Unc79 T C 12: 103,134,595 (GRCm39) V2189A probably damaging Het
Vmn2r106 A C 17: 20,499,361 (GRCm39) S183R probably benign Het
Vmn2r112 G T 17: 22,837,216 (GRCm39) C559F probably damaging Het
Wdhd1 T C 14: 47,481,324 (GRCm39) D1031G possibly damaging Het
Wnt5b T C 6: 119,410,457 (GRCm39) S328G probably benign Het
Zcchc7 T C 4: 44,926,032 (GRCm39) Y344H probably damaging Het
Other mutations in Ncbp2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02875:Ncbp2 APN 16 31,772,971 (GRCm39) missense probably damaging 1.00
R1929:Ncbp2 UTSW 16 31,775,769 (GRCm39) missense probably damaging 0.99
R2185:Ncbp2 UTSW 16 31,775,195 (GRCm39) missense probably damaging 1.00
R2270:Ncbp2 UTSW 16 31,775,769 (GRCm39) missense probably damaging 0.99
R2271:Ncbp2 UTSW 16 31,775,769 (GRCm39) missense probably damaging 0.99
R2272:Ncbp2 UTSW 16 31,775,769 (GRCm39) missense probably damaging 0.99
R6406:Ncbp2 UTSW 16 31,775,161 (GRCm39) frame shift probably null
R6406:Ncbp2 UTSW 16 31,775,159 (GRCm39) frame shift probably null
R6444:Ncbp2 UTSW 16 31,775,161 (GRCm39) frame shift probably null
R6446:Ncbp2 UTSW 16 31,775,161 (GRCm39) frame shift probably null
R6448:Ncbp2 UTSW 16 31,775,161 (GRCm39) frame shift probably null
R6530:Ncbp2 UTSW 16 31,775,161 (GRCm39) frame shift probably null
R6531:Ncbp2 UTSW 16 31,775,161 (GRCm39) frame shift probably null
R9556:Ncbp2 UTSW 16 31,775,758 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- CCCAGAAGTCGTGTTAGACCAA -3'
(R):5'- ACACTAACAAGCACAAGTTCCTT -3'

Sequencing Primer
(F):5'- CCAGAAGTCGTGTTAGACCAACTTTG -3'
(R):5'- TAACAAGCACAAGTTCCTTACAAAAG -3'
Posted On 2018-05-04